Experiment: KB with Fusaric 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4181 and Psyr_4182 are separated by 59 nucleotides Psyr_4182 and Psyr_RNA63 are separated by 112 nucleotides Psyr_RNA63 and Psyr_RNA64 are separated by 95 nucleotides Psyr_RNA64 and Psyr_4183 are separated by 46 nucleotides Psyr_4183 and Psyr_4184 are separated by 4 nucleotides Psyr_4184 and Psyr_4185 are separated by 66 nucleotides
Psyr_4181: Psyr_4181 - Transcription termination factor NusA:Transcription termination factor NusA, C-terminal duplication, at 4,974,119 to 4,975,600
_4181
Psyr_4182: Psyr_4182 - Protein of unknown function DUF150, at 4,975,660 to 4,976,136
_4182
Psyr_RNA63: Psyr_RNA63 - tRNA-Met, at 4,976,249 to 4,976,325
_RNA63
Psyr_RNA64: Psyr_RNA64 - tRNA-Leu, at 4,976,421 to 4,976,506
_RNA64
Psyr_4183: Psyr_4183 - protein translocase subunit secG, at 4,976,553 to 4,976,933
_4183
Psyr_4184: Psyr_4184 - triosephosphate isomerase, at 4,976,938 to 4,977,693
_4184
Psyr_4185: Psyr_4185 - phosphoglucosamine mutase, at 4,977,760 to 4,979,103
_4185
Position (kb) 4976
4977 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4976.203 kb on - strand at 4976.203 kb on - strand at 4976.203 kb on - strand at 4976.203 kb on - strand at 4976.203 kb on - strand at 4976.203 kb on - strand at 4976.203 kb on - strand at 4976.203 kb on - strand at 4976.203 kb on - strand at 4976.204 kb on - strand at 4976.214 kb on - strand at 4976.229 kb on - strand at 4976.305 kb on - strand, within Psyr_RNA63 at 4976.345 kb on - strand at 4976.345 kb on - strand at 4976.345 kb on - strand at 4976.347 kb on - strand at 4976.347 kb on - strand at 4976.347 kb on - strand at 4976.347 kb on - strand at 4976.385 kb on - strand at 4976.385 kb on - strand at 4976.385 kb on - strand at 4976.385 kb on - strand at 4976.385 kb on - strand at 4976.385 kb on - strand at 4976.555 kb on - strand at 4976.555 kb on - strand at 4976.555 kb on - strand at 4976.578 kb on - strand at 4976.659 kb on - strand, within Psyr_4183 at 4976.811 kb on - strand, within Psyr_4183
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Fusaric 250 ug/ml remove 4,976,203 - -0.6 4,976,203 - +0.5 4,976,203 - +0.4 4,976,203 - -2.0 4,976,203 - +0.5 4,976,203 - -0.0 4,976,203 - +0.2 4,976,203 - +1.9 4,976,203 - +1.3 4,976,204 - -0.6 4,976,214 - +0.8 4,976,229 - +0.5 4,976,305 - Psyr_RNA63 0.73 +1.9 4,976,345 - +0.6 4,976,345 - -1.4 4,976,345 - -1.4 4,976,347 - +0.1 4,976,347 - +0.8 4,976,347 - +0.3 4,976,347 - +1.5 4,976,385 - -0.2 4,976,385 - +0.7 4,976,385 - +0.8 4,976,385 - +0.2 4,976,385 - +0.4 4,976,385 - +3.3 4,976,555 - +1.0 4,976,555 - -0.1 4,976,555 - +0.8 4,976,578 - +0.2 4,976,659 - Psyr_4183 0.28 +0.4 4,976,811 - Psyr_4183 0.68 +1.1
Or see this region's nucleotide sequence