Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4114

Experiment: KB with Fusaric 250 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4113 and Psyr_4114 overlap by 1 nucleotidesPsyr_4114 and Psyr_4115 are separated by 161 nucleotidesPsyr_4115 and Psyr_4116 overlap by 4 nucleotides Psyr_4113: Psyr_4113 - LppC putative lipoprotein, at 4,903,778 to 4,905,592 _4113 Psyr_4114: Psyr_4114 - Protein of unknown function UPF0102, at 4,905,592 to 4,905,963 _4114 Psyr_4115: Psyr_4115 - phosphoheptose isomerase, at 4,906,125 to 4,906,718 _4115 Psyr_4116: Psyr_4116 - Transport-associated protein, at 4,906,715 to 4,907,293 _4116 Position (kb) 4905 4906Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4904.690 kb on + strand, within Psyr_4113at 4904.691 kb on - strand, within Psyr_4113at 4904.788 kb on + strand, within Psyr_4113at 4904.789 kb on - strand, within Psyr_4113at 4904.805 kb on - strand, within Psyr_4113at 4904.805 kb on - strand, within Psyr_4113at 4904.805 kb on - strand, within Psyr_4113at 4904.840 kb on + strand, within Psyr_4113at 4904.840 kb on + strand, within Psyr_4113at 4905.030 kb on + strand, within Psyr_4113at 4905.219 kb on - strand, within Psyr_4113at 4905.239 kb on + strand, within Psyr_4113at 4905.284 kb on + strand, within Psyr_4113at 4905.284 kb on + strand, within Psyr_4113at 4905.284 kb on + strand, within Psyr_4113at 4905.284 kb on + strand, within Psyr_4113at 4905.284 kb on + strand, within Psyr_4113at 4905.284 kb on + strand, within Psyr_4113at 4905.284 kb on + strand, within Psyr_4113at 4905.284 kb on + strand, within Psyr_4113at 4905.284 kb on + strand, within Psyr_4113at 4905.284 kb on + strand, within Psyr_4113at 4905.284 kb on + strand, within Psyr_4113at 4905.284 kb on + strand, within Psyr_4113at 4905.284 kb on + strand, within Psyr_4113at 4905.284 kb on + strand, within Psyr_4113at 4905.285 kb on - strand, within Psyr_4113at 4905.285 kb on - strand, within Psyr_4113at 4905.285 kb on - strand, within Psyr_4113at 4905.285 kb on - strand, within Psyr_4113at 4905.285 kb on - strand, within Psyr_4113at 4905.285 kb on - strand, within Psyr_4113at 4905.285 kb on - strand, within Psyr_4113at 4905.285 kb on - strand, within Psyr_4113at 4905.285 kb on - strand, within Psyr_4113at 4905.285 kb on - strand, within Psyr_4113at 4905.285 kb on - strand, within Psyr_4113at 4905.285 kb on - strand, within Psyr_4113at 4905.404 kb on + strand, within Psyr_4113at 4905.405 kb on - strand, within Psyr_4113at 4905.405 kb on - strand, within Psyr_4113at 4905.425 kb on + strandat 4905.426 kb on - strandat 4905.692 kb on + strand, within Psyr_4114at 4905.716 kb on + strand, within Psyr_4114at 4905.716 kb on + strand, within Psyr_4114at 4905.716 kb on + strand, within Psyr_4114at 4905.716 kb on + strand, within Psyr_4114at 4905.716 kb on + strand, within Psyr_4114at 4905.716 kb on + strand, within Psyr_4114at 4905.716 kb on + strand, within Psyr_4114at 4905.716 kb on + strand, within Psyr_4114at 4905.717 kb on - strand, within Psyr_4114at 4905.717 kb on - strand, within Psyr_4114at 4905.735 kb on + strand, within Psyr_4114at 4905.740 kb on + strand, within Psyr_4114at 4905.740 kb on + strand, within Psyr_4114at 4905.740 kb on + strand, within Psyr_4114at 4905.740 kb on + strand, within Psyr_4114at 4905.740 kb on + strand, within Psyr_4114at 4905.743 kb on + strand, within Psyr_4114at 4905.743 kb on + strand, within Psyr_4114at 4906.000 kb on + strandat 4906.026 kb on + strandat 4906.026 kb on + strandat 4906.108 kb on + strandat 4906.108 kb on + strandat 4906.108 kb on + strandat 4906.108 kb on + strandat 4906.109 kb on - strandat 4906.109 kb on - strandat 4906.112 kb on + strandat 4906.112 kb on + strandat 4906.112 kb on + strandat 4906.112 kb on + strandat 4906.413 kb on + strand, within Psyr_4115at 4906.414 kb on - strand, within Psyr_4115at 4906.503 kb on - strand, within Psyr_4115at 4906.505 kb on + strand, within Psyr_4115at 4906.506 kb on - strand, within Psyr_4115at 4906.642 kb on + strand, within Psyr_4115at 4906.724 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Fusaric 250 ug/ml
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4,904,690 + Psyr_4113 0.50 +0.1
4,904,691 - Psyr_4113 0.50 +0.5
4,904,788 + Psyr_4113 0.56 -0.9
4,904,789 - Psyr_4113 0.56 +1.1
4,904,805 - Psyr_4113 0.57 +1.3
4,904,805 - Psyr_4113 0.57 +0.2
4,904,805 - Psyr_4113 0.57 +2.0
4,904,840 + Psyr_4113 0.59 +0.8
4,904,840 + Psyr_4113 0.59 -0.3
4,905,030 + Psyr_4113 0.69 -3.1
4,905,219 - Psyr_4113 0.79 +0.3
4,905,239 + Psyr_4113 0.80 +1.4
4,905,284 + Psyr_4113 0.83 -0.7
4,905,284 + Psyr_4113 0.83 -0.3
4,905,284 + Psyr_4113 0.83 +0.2
4,905,284 + Psyr_4113 0.83 +1.2
4,905,284 + Psyr_4113 0.83 -0.8
4,905,284 + Psyr_4113 0.83 +1.2
4,905,284 + Psyr_4113 0.83 +0.1
4,905,284 + Psyr_4113 0.83 +0.6
4,905,284 + Psyr_4113 0.83 -0.2
4,905,284 + Psyr_4113 0.83 -0.3
4,905,284 + Psyr_4113 0.83 -0.4
4,905,284 + Psyr_4113 0.83 +0.6
4,905,284 + Psyr_4113 0.83 +0.3
4,905,284 + Psyr_4113 0.83 -0.8
4,905,285 - Psyr_4113 0.83 +1.3
4,905,285 - Psyr_4113 0.83 +0.1
4,905,285 - Psyr_4113 0.83 -0.7
4,905,285 - Psyr_4113 0.83 +0.0
4,905,285 - Psyr_4113 0.83 -0.6
4,905,285 - Psyr_4113 0.83 +2.6
4,905,285 - Psyr_4113 0.83 +0.4
4,905,285 - Psyr_4113 0.83 -1.1
4,905,285 - Psyr_4113 0.83 -0.2
4,905,285 - Psyr_4113 0.83 +0.4
4,905,285 - Psyr_4113 0.83 +0.9
4,905,285 - Psyr_4113 0.83 +0.0
4,905,404 + Psyr_4113 0.90 -0.3
4,905,405 - Psyr_4113 0.90 -1.2
4,905,405 - Psyr_4113 0.90 +0.5
4,905,425 + -0.2
4,905,426 - +0.0
4,905,692 + Psyr_4114 0.27 -2.8
4,905,716 + Psyr_4114 0.33 -2.5
4,905,716 + Psyr_4114 0.33 -2.0
4,905,716 + Psyr_4114 0.33 +0.3
4,905,716 + Psyr_4114 0.33 -1.7
4,905,716 + Psyr_4114 0.33 -1.0
4,905,716 + Psyr_4114 0.33 +0.6
4,905,716 + Psyr_4114 0.33 -2.9
4,905,716 + Psyr_4114 0.33 +0.5
4,905,717 - Psyr_4114 0.34 -0.9
4,905,717 - Psyr_4114 0.34 -0.8
4,905,735 + Psyr_4114 0.38 +0.0
4,905,740 + Psyr_4114 0.40 -0.4
4,905,740 + Psyr_4114 0.40 -0.2
4,905,740 + Psyr_4114 0.40 -0.9
4,905,740 + Psyr_4114 0.40 -4.2
4,905,740 + Psyr_4114 0.40 +0.3
4,905,743 + Psyr_4114 0.41 -2.6
4,905,743 + Psyr_4114 0.41 +0.3
4,906,000 + +0.2
4,906,026 + +0.6
4,906,026 + +0.7
4,906,108 + +0.1
4,906,108 + +0.5
4,906,108 + +0.9
4,906,108 + +0.3
4,906,109 - -1.0
4,906,109 - +0.3
4,906,112 + -2.1
4,906,112 + +1.1
4,906,112 + -1.6
4,906,112 + +0.3
4,906,413 + Psyr_4115 0.48 -0.6
4,906,414 - Psyr_4115 0.49 -0.2
4,906,503 - Psyr_4115 0.64 -0.0
4,906,505 + Psyr_4115 0.64 +1.5
4,906,506 - Psyr_4115 0.64 +0.1
4,906,642 + Psyr_4115 0.87 +1.7
4,906,724 - -0.5

Or see this region's nucleotide sequence