Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3735

Experiment: KB with Fusaric 250 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3734 and Psyr_3735 are separated by 559 nucleotidesPsyr_3735 and Psyr_3736 are separated by 625 nucleotides Psyr_3734: Psyr_3734 - Outer membrane autotransporter barrel, at 4,443,425 to 4,446,430 _3734 Psyr_3735: Psyr_3735 - PAS, at 4,446,990 to 4,448,555 _3735 Psyr_3736: Psyr_3736 - Peptidoglycan-binding LysM, at 4,449,181 to 4,451,394 _3736 Position (kb) 4446 4447 4448 4449Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4446.108 kb on + strand, within Psyr_3734at 4446.108 kb on + strand, within Psyr_3734at 4446.108 kb on + strand, within Psyr_3734at 4446.108 kb on + strand, within Psyr_3734at 4446.108 kb on + strand, within Psyr_3734at 4446.108 kb on + strand, within Psyr_3734at 4446.108 kb on + strand, within Psyr_3734at 4446.109 kb on - strand, within Psyr_3734at 4446.109 kb on - strand, within Psyr_3734at 4446.109 kb on - strand, within Psyr_3734at 4446.109 kb on - strand, within Psyr_3734at 4446.109 kb on - strand, within Psyr_3734at 4446.321 kb on + strandat 4446.322 kb on - strandat 4446.322 kb on - strandat 4446.322 kb on - strandat 4446.331 kb on - strandat 4446.349 kb on + strandat 4446.350 kb on - strandat 4446.350 kb on - strandat 4446.397 kb on - strandat 4446.446 kb on - strandat 4446.480 kb on + strandat 4446.481 kb on - strandat 4446.481 kb on - strandat 4446.564 kb on + strandat 4446.565 kb on - strandat 4446.566 kb on + strandat 4446.566 kb on + strandat 4446.567 kb on - strandat 4446.700 kb on + strandat 4446.700 kb on + strandat 4446.749 kb on + strandat 4446.750 kb on - strandat 4446.753 kb on + strandat 4446.753 kb on + strandat 4446.830 kb on + strandat 4446.907 kb on + strandat 4446.907 kb on + strandat 4446.907 kb on + strandat 4446.907 kb on + strandat 4446.907 kb on + strandat 4446.908 kb on - strandat 4446.908 kb on - strandat 4446.908 kb on - strandat 4446.908 kb on - strandat 4446.908 kb on - strandat 4446.908 kb on - strandat 4447.377 kb on + strand, within Psyr_3735at 4447.377 kb on + strand, within Psyr_3735at 4447.903 kb on + strand, within Psyr_3735at 4447.903 kb on + strand, within Psyr_3735at 4447.903 kb on + strand, within Psyr_3735at 4447.903 kb on + strand, within Psyr_3735at 4447.904 kb on - strand, within Psyr_3735at 4447.904 kb on - strand, within Psyr_3735at 4447.980 kb on + strand, within Psyr_3735at 4447.980 kb on + strand, within Psyr_3735at 4447.980 kb on + strand, within Psyr_3735at 4447.980 kb on + strand, within Psyr_3735at 4447.980 kb on + strand, within Psyr_3735at 4447.980 kb on + strand, within Psyr_3735at 4447.981 kb on - strand, within Psyr_3735at 4447.981 kb on - strand, within Psyr_3735at 4447.981 kb on - strand, within Psyr_3735at 4448.053 kb on + strand, within Psyr_3735at 4448.113 kb on + strand, within Psyr_3735at 4448.114 kb on - strand, within Psyr_3735at 4448.167 kb on + strand, within Psyr_3735at 4448.167 kb on + strand, within Psyr_3735at 4448.167 kb on + strand, within Psyr_3735at 4448.167 kb on + strand, within Psyr_3735at 4448.167 kb on + strand, within Psyr_3735at 4448.167 kb on + strand, within Psyr_3735at 4448.168 kb on - strand, within Psyr_3735at 4448.259 kb on + strand, within Psyr_3735at 4448.259 kb on + strand, within Psyr_3735at 4448.263 kb on + strand, within Psyr_3735at 4448.263 kb on + strand, within Psyr_3735at 4448.263 kb on + strand, within Psyr_3735at 4448.263 kb on + strand, within Psyr_3735at 4448.264 kb on - strand, within Psyr_3735at 4448.264 kb on - strand, within Psyr_3735at 4448.279 kb on - strand, within Psyr_3735at 4448.281 kb on + strand, within Psyr_3735at 4448.282 kb on - strand, within Psyr_3735at 4448.351 kb on + strand, within Psyr_3735at 4448.351 kb on + strand, within Psyr_3735at 4448.351 kb on + strand, within Psyr_3735at 4448.351 kb on + strand, within Psyr_3735at 4448.351 kb on + strand, within Psyr_3735at 4448.352 kb on - strand, within Psyr_3735at 4448.352 kb on - strand, within Psyr_3735at 4448.352 kb on - strand, within Psyr_3735at 4448.352 kb on - strand, within Psyr_3735at 4448.461 kb on + strandat 4448.461 kb on + strandat 4448.461 kb on + strandat 4448.461 kb on + strandat 4448.462 kb on - strandat 4448.557 kb on - strandat 4448.557 kb on - strandat 4448.607 kb on - strandat 4448.607 kb on - strandat 4448.607 kb on - strandat 4448.702 kb on + strandat 4448.703 kb on - strandat 4448.731 kb on + strandat 4448.731 kb on + strandat 4448.854 kb on - strandat 4449.422 kb on - strand, within Psyr_3736

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Fusaric 250 ug/ml
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4,446,108 + Psyr_3734 0.89 -1.2
4,446,108 + Psyr_3734 0.89 -0.1
4,446,108 + Psyr_3734 0.89 +0.5
4,446,108 + Psyr_3734 0.89 -2.3
4,446,108 + Psyr_3734 0.89 -0.6
4,446,108 + Psyr_3734 0.89 -2.5
4,446,108 + Psyr_3734 0.89 +1.2
4,446,109 - Psyr_3734 0.89 +1.1
4,446,109 - Psyr_3734 0.89 -0.6
4,446,109 - Psyr_3734 0.89 -1.0
4,446,109 - Psyr_3734 0.89 +1.5
4,446,109 - Psyr_3734 0.89 +0.7
4,446,321 + -2.9
4,446,322 - -1.6
4,446,322 - +0.0
4,446,322 - +1.0
4,446,331 - +1.5
4,446,349 + +2.3
4,446,350 - +0.5
4,446,350 - +1.1
4,446,397 - +1.1
4,446,446 - +1.7
4,446,480 + -2.2
4,446,481 - -1.5
4,446,481 - -1.5
4,446,564 + -0.3
4,446,565 - -0.1
4,446,566 + -0.6
4,446,566 + +0.3
4,446,567 - -0.6
4,446,700 + +0.3
4,446,700 + +0.2
4,446,749 + +0.7
4,446,750 - -1.0
4,446,753 + +1.0
4,446,753 + -2.6
4,446,830 + -0.5
4,446,907 + +0.4
4,446,907 + -1.3
4,446,907 + -3.0
4,446,907 + +1.1
4,446,907 + -0.3
4,446,908 - +1.1
4,446,908 - -0.3
4,446,908 - +0.1
4,446,908 - -1.5
4,446,908 - -1.6
4,446,908 - +0.6
4,447,377 + Psyr_3735 0.25 -0.2
4,447,377 + Psyr_3735 0.25 -0.3
4,447,903 + Psyr_3735 0.58 -0.1
4,447,903 + Psyr_3735 0.58 -0.1
4,447,903 + Psyr_3735 0.58 +0.7
4,447,903 + Psyr_3735 0.58 +0.2
4,447,904 - Psyr_3735 0.58 -1.0
4,447,904 - Psyr_3735 0.58 +0.5
4,447,980 + Psyr_3735 0.63 +0.0
4,447,980 + Psyr_3735 0.63 -1.3
4,447,980 + Psyr_3735 0.63 -0.1
4,447,980 + Psyr_3735 0.63 +0.0
4,447,980 + Psyr_3735 0.63 -0.7
4,447,980 + Psyr_3735 0.63 -1.3
4,447,981 - Psyr_3735 0.63 +1.1
4,447,981 - Psyr_3735 0.63 +0.1
4,447,981 - Psyr_3735 0.63 -1.1
4,448,053 + Psyr_3735 0.68 -1.9
4,448,113 + Psyr_3735 0.72 +2.1
4,448,114 - Psyr_3735 0.72 -0.6
4,448,167 + Psyr_3735 0.75 -0.2
4,448,167 + Psyr_3735 0.75 -2.0
4,448,167 + Psyr_3735 0.75 +0.0
4,448,167 + Psyr_3735 0.75 -0.0
4,448,167 + Psyr_3735 0.75 -0.6
4,448,167 + Psyr_3735 0.75 +0.2
4,448,168 - Psyr_3735 0.75 +0.4
4,448,259 + Psyr_3735 0.81 -1.7
4,448,259 + Psyr_3735 0.81 +0.4
4,448,263 + Psyr_3735 0.81 +2.0
4,448,263 + Psyr_3735 0.81 -0.1
4,448,263 + Psyr_3735 0.81 +0.1
4,448,263 + Psyr_3735 0.81 -3.2
4,448,264 - Psyr_3735 0.81 +0.9
4,448,264 - Psyr_3735 0.81 +0.2
4,448,279 - Psyr_3735 0.82 +0.1
4,448,281 + Psyr_3735 0.82 +1.7
4,448,282 - Psyr_3735 0.83 +1.1
4,448,351 + Psyr_3735 0.87 +0.7
4,448,351 + Psyr_3735 0.87 -0.9
4,448,351 + Psyr_3735 0.87 +1.5
4,448,351 + Psyr_3735 0.87 -0.3
4,448,351 + Psyr_3735 0.87 +0.2
4,448,352 - Psyr_3735 0.87 -0.9
4,448,352 - Psyr_3735 0.87 +0.5
4,448,352 - Psyr_3735 0.87 +1.7
4,448,352 - Psyr_3735 0.87 +1.6
4,448,461 + -2.6
4,448,461 + +0.8
4,448,461 + -0.2
4,448,461 + -0.3
4,448,462 - +0.7
4,448,557 - -0.8
4,448,557 - -0.4
4,448,607 - +0.0
4,448,607 - -3.9
4,448,607 - +2.5
4,448,702 + +1.7
4,448,703 - +0.8
4,448,731 + -2.8
4,448,731 + -0.5
4,448,854 - -1.9
4,449,422 - Psyr_3736 0.11 -0.3

Or see this region's nucleotide sequence