Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3622

Experiment: KB with Fusaric 250 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3621 and Psyr_3622 are separated by 169 nucleotidesPsyr_3622 and Psyr_3623 are separated by 27 nucleotidesPsyr_3623 and Psyr_3624 are separated by 58 nucleotides Psyr_3621: Psyr_3621 - conserved hypothetical protein, at 4,305,167 to 4,305,928 _3621 Psyr_3622: Psyr_3622 - 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase, at 4,306,098 to 4,307,444 _3622 Psyr_3623: Psyr_3623 - Protein of unknown function DUF1127, at 4,307,472 to 4,307,705 _3623 Psyr_3624: Psyr_3624 - transcriptional regulator, LysR family, at 4,307,764 to 4,308,654 _3624 Position (kb) 4306 4307 4308Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4305.164 kb on + strandat 4305.164 kb on + strandat 4305.165 kb on - strandat 4305.184 kb on + strandat 4305.342 kb on + strand, within Psyr_3621at 4305.492 kb on + strand, within Psyr_3621at 4305.493 kb on - strand, within Psyr_3621at 4305.493 kb on - strand, within Psyr_3621at 4305.493 kb on - strand, within Psyr_3621at 4305.564 kb on + strand, within Psyr_3621at 4305.564 kb on + strand, within Psyr_3621at 4305.564 kb on + strand, within Psyr_3621at 4305.564 kb on + strand, within Psyr_3621at 4305.564 kb on + strand, within Psyr_3621at 4305.564 kb on + strand, within Psyr_3621at 4305.564 kb on + strand, within Psyr_3621at 4305.564 kb on + strand, within Psyr_3621at 4305.564 kb on + strand, within Psyr_3621at 4305.564 kb on + strand, within Psyr_3621at 4305.564 kb on + strand, within Psyr_3621at 4305.564 kb on + strand, within Psyr_3621at 4305.565 kb on - strand, within Psyr_3621at 4305.565 kb on - strand, within Psyr_3621at 4305.565 kb on - strand, within Psyr_3621at 4305.565 kb on - strand, within Psyr_3621at 4305.565 kb on - strand, within Psyr_3621at 4305.565 kb on - strand, within Psyr_3621at 4305.565 kb on - strand, within Psyr_3621at 4305.565 kb on - strand, within Psyr_3621at 4305.565 kb on - strand, within Psyr_3621at 4305.565 kb on - strand, within Psyr_3621at 4305.565 kb on - strand, within Psyr_3621at 4305.565 kb on - strand, within Psyr_3621at 4305.565 kb on - strand, within Psyr_3621at 4305.565 kb on - strand, within Psyr_3621at 4305.565 kb on - strand, within Psyr_3621at 4305.762 kb on + strand, within Psyr_3621at 4305.763 kb on - strand, within Psyr_3621at 4305.793 kb on + strand, within Psyr_3621at 4305.794 kb on - strand, within Psyr_3621at 4305.794 kb on - strand, within Psyr_3621at 4305.962 kb on + strandat 4306.008 kb on - strandat 4306.008 kb on - strandat 4306.060 kb on + strandat 4306.060 kb on + strandat 4306.061 kb on - strandat 4306.061 kb on - strandat 4306.087 kb on + strandat 4306.088 kb on - strandat 4306.097 kb on - strandat 4306.569 kb on + strand, within Psyr_3622at 4306.569 kb on + strand, within Psyr_3622at 4306.569 kb on + strand, within Psyr_3622at 4306.569 kb on + strand, within Psyr_3622at 4306.570 kb on - strand, within Psyr_3622at 4306.570 kb on - strand, within Psyr_3622at 4306.570 kb on - strand, within Psyr_3622at 4306.570 kb on - strand, within Psyr_3622at 4306.570 kb on - strand, within Psyr_3622at 4306.692 kb on + strand, within Psyr_3622at 4306.692 kb on + strand, within Psyr_3622at 4306.693 kb on - strand, within Psyr_3622at 4306.693 kb on - strand, within Psyr_3622at 4306.693 kb on - strand, within Psyr_3622at 4306.693 kb on - strand, within Psyr_3622at 4306.816 kb on - strand, within Psyr_3622at 4306.832 kb on - strand, within Psyr_3622at 4306.832 kb on - strand, within Psyr_3622at 4306.857 kb on + strand, within Psyr_3622at 4306.860 kb on + strand, within Psyr_3622at 4306.861 kb on - strand, within Psyr_3622at 4306.861 kb on - strand, within Psyr_3622at 4307.182 kb on - strand, within Psyr_3622at 4307.256 kb on + strand, within Psyr_3622at 4307.256 kb on + strand, within Psyr_3622at 4307.257 kb on - strand, within Psyr_3622at 4307.257 kb on - strand, within Psyr_3622at 4307.257 kb on - strand, within Psyr_3622at 4307.674 kb on - strand, within Psyr_3623at 4307.748 kb on - strandat 4307.798 kb on + strandat 4307.809 kb on + strandat 4308.008 kb on + strand, within Psyr_3624at 4308.009 kb on - strand, within Psyr_3624at 4308.115 kb on + strand, within Psyr_3624at 4308.115 kb on + strand, within Psyr_3624at 4308.115 kb on + strand, within Psyr_3624at 4308.116 kb on - strand, within Psyr_3624at 4308.116 kb on - strand, within Psyr_3624at 4308.116 kb on - strand, within Psyr_3624at 4308.431 kb on - strand, within Psyr_3624

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Fusaric 250 ug/ml
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4,305,164 + +0.2
4,305,164 + -0.0
4,305,165 - +0.5
4,305,184 + +0.1
4,305,342 + Psyr_3621 0.23 +0.7
4,305,492 + Psyr_3621 0.43 -0.4
4,305,493 - Psyr_3621 0.43 -0.0
4,305,493 - Psyr_3621 0.43 +0.4
4,305,493 - Psyr_3621 0.43 +0.4
4,305,564 + Psyr_3621 0.52 -1.5
4,305,564 + Psyr_3621 0.52 -0.6
4,305,564 + Psyr_3621 0.52 +0.8
4,305,564 + Psyr_3621 0.52 -0.6
4,305,564 + Psyr_3621 0.52 +1.0
4,305,564 + Psyr_3621 0.52 +0.3
4,305,564 + Psyr_3621 0.52 -0.2
4,305,564 + Psyr_3621 0.52 -2.1
4,305,564 + Psyr_3621 0.52 +2.7
4,305,564 + Psyr_3621 0.52 +1.5
4,305,564 + Psyr_3621 0.52 +1.1
4,305,564 + Psyr_3621 0.52 -0.0
4,305,565 - Psyr_3621 0.52 +1.0
4,305,565 - Psyr_3621 0.52 -1.6
4,305,565 - Psyr_3621 0.52 +0.5
4,305,565 - Psyr_3621 0.52 -2.7
4,305,565 - Psyr_3621 0.52 +0.5
4,305,565 - Psyr_3621 0.52 +0.7
4,305,565 - Psyr_3621 0.52 +0.3
4,305,565 - Psyr_3621 0.52 +0.7
4,305,565 - Psyr_3621 0.52 -2.5
4,305,565 - Psyr_3621 0.52 -1.0
4,305,565 - Psyr_3621 0.52 +0.4
4,305,565 - Psyr_3621 0.52 -3.0
4,305,565 - Psyr_3621 0.52 +0.7
4,305,565 - Psyr_3621 0.52 -0.3
4,305,565 - Psyr_3621 0.52 -0.3
4,305,762 + Psyr_3621 0.78 -1.6
4,305,763 - Psyr_3621 0.78 +0.2
4,305,793 + Psyr_3621 0.82 -0.1
4,305,794 - Psyr_3621 0.82 +0.0
4,305,794 - Psyr_3621 0.82 -0.1
4,305,962 + +0.7
4,306,008 - -0.2
4,306,008 - +0.9
4,306,060 + +0.2
4,306,060 + +0.1
4,306,061 - +0.1
4,306,061 - +0.9
4,306,087 + -0.2
4,306,088 - -2.9
4,306,097 - +0.2
4,306,569 + Psyr_3622 0.35 -0.2
4,306,569 + Psyr_3622 0.35 -1.1
4,306,569 + Psyr_3622 0.35 -1.6
4,306,569 + Psyr_3622 0.35 +0.7
4,306,570 - Psyr_3622 0.35 -0.3
4,306,570 - Psyr_3622 0.35 +2.1
4,306,570 - Psyr_3622 0.35 -1.5
4,306,570 - Psyr_3622 0.35 -3.6
4,306,570 - Psyr_3622 0.35 -0.0
4,306,692 + Psyr_3622 0.44 +1.7
4,306,692 + Psyr_3622 0.44 +0.1
4,306,693 - Psyr_3622 0.44 -1.6
4,306,693 - Psyr_3622 0.44 -1.0
4,306,693 - Psyr_3622 0.44 +0.5
4,306,693 - Psyr_3622 0.44 -0.4
4,306,816 - Psyr_3622 0.53 +1.3
4,306,832 - Psyr_3622 0.54 -0.7
4,306,832 - Psyr_3622 0.54 -0.1
4,306,857 + Psyr_3622 0.56 -0.9
4,306,860 + Psyr_3622 0.57 +1.1
4,306,861 - Psyr_3622 0.57 -0.3
4,306,861 - Psyr_3622 0.57 -1.1
4,307,182 - Psyr_3622 0.80 -0.5
4,307,256 + Psyr_3622 0.86 -3.2
4,307,256 + Psyr_3622 0.86 -1.3
4,307,257 - Psyr_3622 0.86 -0.4
4,307,257 - Psyr_3622 0.86 +0.0
4,307,257 - Psyr_3622 0.86 -1.8
4,307,674 - Psyr_3623 0.86 -1.1
4,307,748 - +0.1
4,307,798 + -0.3
4,307,809 + -0.9
4,308,008 + Psyr_3624 0.27 -0.1
4,308,009 - Psyr_3624 0.27 +0.3
4,308,115 + Psyr_3624 0.39 +0.5
4,308,115 + Psyr_3624 0.39 -0.4
4,308,115 + Psyr_3624 0.39 -0.6
4,308,116 - Psyr_3624 0.40 +0.8
4,308,116 - Psyr_3624 0.40 +0.5
4,308,116 - Psyr_3624 0.40 -0.6
4,308,431 - Psyr_3624 0.75 +0.0

Or see this region's nucleotide sequence