Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3497

Experiment: KB with Fusaric 250 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3496 and Psyr_3497 are separated by 402 nucleotidesPsyr_3497 and Psyr_3498 are separated by 263 nucleotides Psyr_3496: Psyr_3496 - TPR repeat:Response regulator receiver:Response regulator receiver:Response regulator receiver, at 4,165,014 to 4,166,615 _3496 Psyr_3497: Psyr_3497 - SH3-like region, at 4,167,018 to 4,167,848 _3497 Psyr_3498: Psyr_3498 - Conserved hypothetical protein 730, at 4,168,112 to 4,169,518 _3498 Position (kb) 4167 4168Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4166.108 kb on - strand, within Psyr_3496at 4166.108 kb on - strand, within Psyr_3496at 4166.358 kb on + strand, within Psyr_3496at 4166.358 kb on + strand, within Psyr_3496at 4166.359 kb on - strand, within Psyr_3496at 4166.359 kb on - strand, within Psyr_3496at 4166.359 kb on - strand, within Psyr_3496at 4166.359 kb on - strand, within Psyr_3496at 4166.586 kb on - strandat 4166.605 kb on + strandat 4166.605 kb on + strandat 4166.606 kb on - strandat 4166.646 kb on + strandat 4166.647 kb on - strandat 4166.710 kb on + strandat 4166.710 kb on + strandat 4166.711 kb on - strandat 4166.822 kb on + strandat 4166.822 kb on + strandat 4167.014 kb on + strandat 4167.014 kb on + strandat 4167.015 kb on - strandat 4167.019 kb on + strandat 4167.019 kb on + strandat 4167.020 kb on - strandat 4167.020 kb on - strandat 4167.118 kb on + strand, within Psyr_3497at 4167.118 kb on + strand, within Psyr_3497at 4167.119 kb on - strand, within Psyr_3497at 4167.119 kb on - strand, within Psyr_3497at 4167.119 kb on - strand, within Psyr_3497at 4167.522 kb on + strand, within Psyr_3497at 4167.523 kb on - strand, within Psyr_3497at 4167.523 kb on - strand, within Psyr_3497at 4167.523 kb on - strand, within Psyr_3497at 4167.523 kb on - strand, within Psyr_3497at 4167.526 kb on + strand, within Psyr_3497at 4167.526 kb on + strand, within Psyr_3497at 4167.526 kb on + strand, within Psyr_3497at 4167.526 kb on + strand, within Psyr_3497at 4167.526 kb on + strand, within Psyr_3497at 4167.526 kb on + strand, within Psyr_3497at 4167.526 kb on + strand, within Psyr_3497at 4167.526 kb on + strand, within Psyr_3497at 4167.527 kb on - strand, within Psyr_3497at 4167.527 kb on - strand, within Psyr_3497at 4167.527 kb on - strand, within Psyr_3497at 4167.527 kb on - strand, within Psyr_3497at 4167.527 kb on - strand, within Psyr_3497at 4167.527 kb on - strand, within Psyr_3497at 4167.527 kb on - strand, within Psyr_3497at 4167.527 kb on - strand, within Psyr_3497at 4167.527 kb on - strand, within Psyr_3497at 4167.527 kb on - strand, within Psyr_3497at 4167.527 kb on - strand, within Psyr_3497at 4167.530 kb on + strand, within Psyr_3497at 4167.531 kb on - strand, within Psyr_3497at 4167.702 kb on + strand, within Psyr_3497at 4167.703 kb on - strand, within Psyr_3497at 4167.703 kb on - strand, within Psyr_3497at 4167.709 kb on - strand, within Psyr_3497at 4167.723 kb on + strand, within Psyr_3497at 4167.809 kb on + strandat 4167.875 kb on + strandat 4168.065 kb on + strandat 4168.141 kb on + strandat 4168.141 kb on + strandat 4168.141 kb on + strandat 4168.142 kb on - strandat 4168.142 kb on - strandat 4168.142 kb on - strandat 4168.142 kb on - strandat 4168.176 kb on + strandat 4168.177 kb on - strandat 4168.253 kb on + strand, within Psyr_3498at 4168.253 kb on + strand, within Psyr_3498at 4168.253 kb on + strand, within Psyr_3498at 4168.253 kb on + strand, within Psyr_3498at 4168.253 kb on + strand, within Psyr_3498at 4168.253 kb on + strand, within Psyr_3498at 4168.253 kb on + strand, within Psyr_3498at 4168.253 kb on + strand, within Psyr_3498at 4168.253 kb on + strand, within Psyr_3498at 4168.254 kb on - strand, within Psyr_3498at 4168.254 kb on - strand, within Psyr_3498at 4168.254 kb on - strandat 4168.254 kb on - strand, within Psyr_3498at 4168.254 kb on - strand, within Psyr_3498at 4168.254 kb on - strand, within Psyr_3498at 4168.254 kb on - strand, within Psyr_3498at 4168.254 kb on - strand, within Psyr_3498at 4168.254 kb on - strand, within Psyr_3498at 4168.254 kb on - strand, within Psyr_3498at 4168.254 kb on - strand, within Psyr_3498at 4168.254 kb on - strand, within Psyr_3498at 4168.334 kb on + strand, within Psyr_3498at 4168.478 kb on + strand, within Psyr_3498at 4168.478 kb on + strand, within Psyr_3498at 4168.478 kb on + strand, within Psyr_3498at 4168.478 kb on + strand, within Psyr_3498at 4168.478 kb on + strand, within Psyr_3498at 4168.479 kb on - strand, within Psyr_3498at 4168.481 kb on - strand, within Psyr_3498at 4168.541 kb on + strand, within Psyr_3498at 4168.541 kb on + strand, within Psyr_3498at 4168.541 kb on + strand, within Psyr_3498at 4168.542 kb on - strand, within Psyr_3498at 4168.542 kb on - strand, within Psyr_3498at 4168.542 kb on - strand, within Psyr_3498at 4168.631 kb on - strand, within Psyr_3498at 4168.641 kb on - strand, within Psyr_3498at 4168.641 kb on - strand, within Psyr_3498at 4168.646 kb on + strand, within Psyr_3498at 4168.646 kb on + strand, within Psyr_3498at 4168.646 kb on + strand, within Psyr_3498at 4168.646 kb on + strand, within Psyr_3498at 4168.646 kb on + strand, within Psyr_3498at 4168.646 kb on + strand, within Psyr_3498at 4168.646 kb on + strand, within Psyr_3498at 4168.646 kb on + strand, within Psyr_3498at 4168.647 kb on - strand, within Psyr_3498at 4168.647 kb on - strand, within Psyr_3498at 4168.647 kb on - strand, within Psyr_3498at 4168.647 kb on - strand, within Psyr_3498at 4168.647 kb on - strand, within Psyr_3498

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Fusaric 250 ug/ml
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4,166,108 - Psyr_3496 0.68 +0.8
4,166,108 - Psyr_3496 0.68 -0.3
4,166,358 + Psyr_3496 0.84 -0.2
4,166,358 + Psyr_3496 0.84 -0.8
4,166,359 - Psyr_3496 0.84 -0.8
4,166,359 - Psyr_3496 0.84 -0.4
4,166,359 - Psyr_3496 0.84 -1.6
4,166,359 - Psyr_3496 0.84 +0.7
4,166,586 - +1.3
4,166,605 + +0.7
4,166,605 + +0.7
4,166,606 - -1.1
4,166,646 + +0.3
4,166,647 - -0.5
4,166,710 + +1.2
4,166,710 + -0.0
4,166,711 - -0.8
4,166,822 + -0.1
4,166,822 + +0.3
4,167,014 + +0.8
4,167,014 + +0.7
4,167,015 - +0.9
4,167,019 + +0.6
4,167,019 + +0.6
4,167,020 - +0.1
4,167,020 - -0.3
4,167,118 + Psyr_3497 0.12 -0.9
4,167,118 + Psyr_3497 0.12 -1.1
4,167,119 - Psyr_3497 0.12 +0.3
4,167,119 - Psyr_3497 0.12 -1.2
4,167,119 - Psyr_3497 0.12 +2.9
4,167,522 + Psyr_3497 0.61 +1.4
4,167,523 - Psyr_3497 0.61 +1.0
4,167,523 - Psyr_3497 0.61 +0.1
4,167,523 - Psyr_3497 0.61 +1.1
4,167,523 - Psyr_3497 0.61 -0.2
4,167,526 + Psyr_3497 0.61 -0.2
4,167,526 + Psyr_3497 0.61 +0.1
4,167,526 + Psyr_3497 0.61 +1.1
4,167,526 + Psyr_3497 0.61 +1.2
4,167,526 + Psyr_3497 0.61 -0.4
4,167,526 + Psyr_3497 0.61 +0.1
4,167,526 + Psyr_3497 0.61 -1.6
4,167,526 + Psyr_3497 0.61 +1.3
4,167,527 - Psyr_3497 0.61 +1.3
4,167,527 - Psyr_3497 0.61 -0.4
4,167,527 - Psyr_3497 0.61 -0.8
4,167,527 - Psyr_3497 0.61 +1.8
4,167,527 - Psyr_3497 0.61 -0.3
4,167,527 - Psyr_3497 0.61 +0.7
4,167,527 - Psyr_3497 0.61 -1.5
4,167,527 - Psyr_3497 0.61 +1.2
4,167,527 - Psyr_3497 0.61 +0.6
4,167,527 - Psyr_3497 0.61 -1.2
4,167,527 - Psyr_3497 0.61 +0.8
4,167,530 + Psyr_3497 0.62 +2.2
4,167,531 - Psyr_3497 0.62 +0.6
4,167,702 + Psyr_3497 0.82 +0.5
4,167,703 - Psyr_3497 0.82 +0.7
4,167,703 - Psyr_3497 0.82 -0.3
4,167,709 - Psyr_3497 0.83 +0.1
4,167,723 + Psyr_3497 0.85 +1.5
4,167,809 + -1.2
4,167,875 + +0.2
4,168,065 + +0.6
4,168,141 + +0.4
4,168,141 + -1.4
4,168,141 + +2.8
4,168,142 - +0.7
4,168,142 - +1.5
4,168,142 - +0.3
4,168,142 - -0.2
4,168,176 + -1.0
4,168,177 - +0.3
4,168,253 + Psyr_3498 0.10 +0.8
4,168,253 + Psyr_3498 0.10 -1.2
4,168,253 + Psyr_3498 0.10 -1.6
4,168,253 + Psyr_3498 0.10 -0.7
4,168,253 + Psyr_3498 0.10 +1.2
4,168,253 + Psyr_3498 0.10 -1.1
4,168,253 + Psyr_3498 0.10 -0.7
4,168,253 + Psyr_3498 0.10 +1.7
4,168,253 + Psyr_3498 0.10 -1.1
4,168,254 - Psyr_3498 0.10 -0.6
4,168,254 - Psyr_3498 0.10 -0.7
4,168,254 - +0.7
4,168,254 - Psyr_3498 0.10 +0.7
4,168,254 - Psyr_3498 0.10 -0.1
4,168,254 - Psyr_3498 0.10 -0.4
4,168,254 - Psyr_3498 0.10 -0.2
4,168,254 - Psyr_3498 0.10 -2.3
4,168,254 - Psyr_3498 0.10 -0.8
4,168,254 - Psyr_3498 0.10 -0.3
4,168,254 - Psyr_3498 0.10 +0.1
4,168,254 - Psyr_3498 0.10 -2.8
4,168,334 + Psyr_3498 0.16 +0.4
4,168,478 + Psyr_3498 0.26 -0.7
4,168,478 + Psyr_3498 0.26 +0.5
4,168,478 + Psyr_3498 0.26 +0.4
4,168,478 + Psyr_3498 0.26 +1.5
4,168,478 + Psyr_3498 0.26 +1.2
4,168,479 - Psyr_3498 0.26 +1.0
4,168,481 - Psyr_3498 0.26 +0.1
4,168,541 + Psyr_3498 0.30 +0.7
4,168,541 + Psyr_3498 0.30 +0.1
4,168,541 + Psyr_3498 0.30 -0.6
4,168,542 - Psyr_3498 0.31 -0.1
4,168,542 - Psyr_3498 0.31 +0.7
4,168,542 - Psyr_3498 0.31 +1.3
4,168,631 - Psyr_3498 0.37 -0.1
4,168,641 - Psyr_3498 0.38 +0.1
4,168,641 - Psyr_3498 0.38 +2.0
4,168,646 + Psyr_3498 0.38 +1.2
4,168,646 + Psyr_3498 0.38 -3.0
4,168,646 + Psyr_3498 0.38 +0.1
4,168,646 + Psyr_3498 0.38 -1.2
4,168,646 + Psyr_3498 0.38 -2.1
4,168,646 + Psyr_3498 0.38 +1.5
4,168,646 + Psyr_3498 0.38 +1.6
4,168,646 + Psyr_3498 0.38 +1.9
4,168,647 - Psyr_3498 0.38 +1.1
4,168,647 - Psyr_3498 0.38 -0.5
4,168,647 - Psyr_3498 0.38 +0.9
4,168,647 - Psyr_3498 0.38 -0.0
4,168,647 - Psyr_3498 0.38 +0.7

Or see this region's nucleotide sequence