Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3436

Experiment: KB with Fusaric 250 ug/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_3434 and Psyr_3435 are separated by 33 nucleotidesPsyr_3435 and Psyr_3436 are separated by 19 nucleotidesPsyr_3436 and Psyr_3437 are separated by 244 nucleotidesPsyr_3437 and Psyr_3438 overlap by 4 nucleotides Psyr_3434: Psyr_3434 - CheW-like protein:ATP-binding region, ATPase-like:Signal transducing histidine kinase, homodimeric:Hpt, at 4,096,830 to 4,099,106 _3434 Psyr_3435: Psyr_3435 - chemotaxis phosphatase, CheZ, at 4,099,140 to 4,099,925 _3435 Psyr_3436: Psyr_3436 - Response regulator receiver, at 4,099,945 to 4,100,331 _3436 Psyr_3437: Psyr_3437 - RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG, at 4,100,576 to 4,101,316 _3437 Psyr_3438: Psyr_3438 - Cobyrinic acid a,c-diamide synthase, at 4,101,313 to 4,102,146 _3438 Position (kb) 4099 4100 4101Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4098.954 kb on + strandat 4098.954 kb on + strandat 4098.954 kb on + strandat 4098.955 kb on - strandat 4098.955 kb on - strandat 4098.955 kb on - strandat 4098.955 kb on - strandat 4098.955 kb on - strandat 4098.955 kb on - strandat 4098.955 kb on - strandat 4098.955 kb on - strandat 4098.955 kb on - strandat 4099.141 kb on + strandat 4099.141 kb on + strandat 4099.142 kb on - strandat 4099.142 kb on - strandat 4099.170 kb on + strandat 4099.170 kb on + strandat 4099.171 kb on - strandat 4099.171 kb on - strandat 4099.171 kb on - strandat 4099.206 kb on - strandat 4099.405 kb on + strand, within Psyr_3435at 4099.598 kb on + strand, within Psyr_3435at 4099.657 kb on + strand, within Psyr_3435at 4099.657 kb on + strand, within Psyr_3435at 4099.657 kb on + strand, within Psyr_3435at 4099.657 kb on + strand, within Psyr_3435at 4099.657 kb on + strand, within Psyr_3435at 4099.658 kb on - strand, within Psyr_3435at 4099.658 kb on - strand, within Psyr_3435at 4099.734 kb on + strand, within Psyr_3435at 4099.884 kb on + strandat 4099.950 kb on + strandat 4099.950 kb on + strandat 4099.950 kb on + strandat 4099.951 kb on - strandat 4099.951 kb on - strandat 4099.951 kb on - strandat 4100.014 kb on + strand, within Psyr_3436at 4100.014 kb on + strand, within Psyr_3436at 4100.014 kb on + strand, within Psyr_3436at 4100.014 kb on + strand, within Psyr_3436at 4100.014 kb on + strand, within Psyr_3436at 4100.014 kb on + strand, within Psyr_3436at 4100.014 kb on + strand, within Psyr_3436at 4100.014 kb on + strand, within Psyr_3436at 4100.014 kb on + strand, within Psyr_3436at 4100.014 kb on + strand, within Psyr_3436at 4100.015 kb on - strand, within Psyr_3436at 4100.015 kb on - strand, within Psyr_3436at 4100.015 kb on - strand, within Psyr_3436at 4100.015 kb on - strand, within Psyr_3436at 4100.018 kb on + strand, within Psyr_3436at 4100.019 kb on - strand, within Psyr_3436at 4100.019 kb on - strand, within Psyr_3436at 4100.019 kb on - strand, within Psyr_3436at 4100.244 kb on + strand, within Psyr_3436at 4100.244 kb on + strand, within Psyr_3436at 4100.245 kb on - strand, within Psyr_3436at 4100.518 kb on + strandat 4100.559 kb on - strandat 4100.633 kb on + strandat 4100.633 kb on + strandat 4100.633 kb on + strandat 4100.634 kb on - strandat 4100.634 kb on - strandat 4100.634 kb on - strandat 4100.703 kb on + strand, within Psyr_3437at 4100.704 kb on - strand, within Psyr_3437at 4100.706 kb on + strand, within Psyr_3437at 4100.706 kb on + strand, within Psyr_3437at 4100.706 kb on + strand, within Psyr_3437at 4100.707 kb on - strand, within Psyr_3437at 4100.707 kb on - strand, within Psyr_3437at 4100.893 kb on + strand, within Psyr_3437at 4100.913 kb on + strand, within Psyr_3437at 4100.913 kb on + strand, within Psyr_3437at 4100.913 kb on + strand, within Psyr_3437at 4100.913 kb on + strand, within Psyr_3437at 4100.913 kb on + strand, within Psyr_3437at 4100.914 kb on - strand, within Psyr_3437at 4100.914 kb on - strand, within Psyr_3437at 4100.914 kb on - strand, within Psyr_3437at 4100.914 kb on - strand, within Psyr_3437at 4100.927 kb on + strand, within Psyr_3437at 4100.928 kb on - strand, within Psyr_3437at 4100.928 kb on - strand, within Psyr_3437at 4100.928 kb on - strand, within Psyr_3437at 4100.928 kb on - strand, within Psyr_3437at 4100.977 kb on + strand, within Psyr_3437at 4101.016 kb on + strand, within Psyr_3437at 4101.017 kb on - strand, within Psyr_3437at 4101.096 kb on + strand, within Psyr_3437at 4101.096 kb on + strand, within Psyr_3437at 4101.096 kb on + strand, within Psyr_3437at 4101.096 kb on + strand, within Psyr_3437at 4101.096 kb on + strand, within Psyr_3437at 4101.096 kb on + strand, within Psyr_3437at 4101.097 kb on - strand, within Psyr_3437at 4101.097 kb on - strand, within Psyr_3437at 4101.097 kb on - strand, within Psyr_3437at 4101.097 kb on - strand, within Psyr_3437at 4101.097 kb on - strand, within Psyr_3437at 4101.097 kb on - strand, within Psyr_3437at 4101.097 kb on - strand, within Psyr_3437at 4101.129 kb on + strand, within Psyr_3437at 4101.129 kb on + strand, within Psyr_3437at 4101.129 kb on + strand, within Psyr_3437at 4101.129 kb on + strand, within Psyr_3437at 4101.129 kb on + strand, within Psyr_3437at 4101.129 kb on + strand, within Psyr_3437at 4101.130 kb on - strand, within Psyr_3437at 4101.130 kb on - strand, within Psyr_3437at 4101.130 kb on - strand, within Psyr_3437at 4101.130 kb on - strand, within Psyr_3437at 4101.130 kb on - strand, within Psyr_3437at 4101.130 kb on - strand, within Psyr_3437at 4101.130 kb on - strand, within Psyr_3437at 4101.130 kb on - strand, within Psyr_3437at 4101.264 kb on + strandat 4101.291 kb on + strandat 4101.291 kb on + strandat 4101.291 kb on + strandat 4101.292 kb on - strandat 4101.292 kb on - strandat 4101.292 kb on - strandat 4101.292 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Fusaric 250 ug/ml
remove
4,098,954 + -0.3
4,098,954 + -0.9
4,098,954 + -2.5
4,098,955 - +1.7
4,098,955 - +1.0
4,098,955 - -0.3
4,098,955 - +0.4
4,098,955 - -0.3
4,098,955 - -1.0
4,098,955 - +1.9
4,098,955 - +0.7
4,098,955 - +1.7
4,099,141 + -3.0
4,099,141 + +1.2
4,099,142 - -0.9
4,099,142 - +3.6
4,099,170 + +0.1
4,099,170 + -2.1
4,099,171 - +0.7
4,099,171 - +0.4
4,099,171 - +0.1
4,099,206 - +0.1
4,099,405 + Psyr_3435 0.34 +1.0
4,099,598 + Psyr_3435 0.58 +0.5
4,099,657 + Psyr_3435 0.66 -3.0
4,099,657 + Psyr_3435 0.66 -2.1
4,099,657 + Psyr_3435 0.66 -1.2
4,099,657 + Psyr_3435 0.66 +1.0
4,099,657 + Psyr_3435 0.66 -2.3
4,099,658 - Psyr_3435 0.66 +0.5
4,099,658 - Psyr_3435 0.66 +0.4
4,099,734 + Psyr_3435 0.76 +0.4
4,099,884 + -0.6
4,099,950 + +0.8
4,099,950 + +2.2
4,099,950 + +1.9
4,099,951 - +0.7
4,099,951 - +0.5
4,099,951 - +0.9
4,100,014 + Psyr_3436 0.18 -1.0
4,100,014 + Psyr_3436 0.18 -1.9
4,100,014 + Psyr_3436 0.18 -0.9
4,100,014 + Psyr_3436 0.18 -1.5
4,100,014 + Psyr_3436 0.18 +0.6
4,100,014 + Psyr_3436 0.18 -1.3
4,100,014 + Psyr_3436 0.18 +1.1
4,100,014 + Psyr_3436 0.18 -1.6
4,100,014 + Psyr_3436 0.18 -2.3
4,100,014 + Psyr_3436 0.18 -1.5
4,100,015 - Psyr_3436 0.18 -1.4
4,100,015 - Psyr_3436 0.18 -0.1
4,100,015 - Psyr_3436 0.18 -2.8
4,100,015 - Psyr_3436 0.18 -0.6
4,100,018 + Psyr_3436 0.19 -0.9
4,100,019 - Psyr_3436 0.19 -0.3
4,100,019 - Psyr_3436 0.19 +0.3
4,100,019 - Psyr_3436 0.19 -0.7
4,100,244 + Psyr_3436 0.77 -0.4
4,100,244 + Psyr_3436 0.77 +1.0
4,100,245 - Psyr_3436 0.78 +1.3
4,100,518 + +0.8
4,100,559 - +1.3
4,100,633 + -0.5
4,100,633 + -0.9
4,100,633 + -0.3
4,100,634 - +0.2
4,100,634 - +0.0
4,100,634 - +1.5
4,100,703 + Psyr_3437 0.17 +0.2
4,100,704 - Psyr_3437 0.17 +1.3
4,100,706 + Psyr_3437 0.18 +0.7
4,100,706 + Psyr_3437 0.18 +0.6
4,100,706 + Psyr_3437 0.18 +0.6
4,100,707 - Psyr_3437 0.18 +1.3
4,100,707 - Psyr_3437 0.18 +0.7
4,100,893 + Psyr_3437 0.43 -2.1
4,100,913 + Psyr_3437 0.45 -0.9
4,100,913 + Psyr_3437 0.45 +1.0
4,100,913 + Psyr_3437 0.45 -1.6
4,100,913 + Psyr_3437 0.45 -0.5
4,100,913 + Psyr_3437 0.45 +0.0
4,100,914 - Psyr_3437 0.46 +0.9
4,100,914 - Psyr_3437 0.46 -0.2
4,100,914 - Psyr_3437 0.46 +0.3
4,100,914 - Psyr_3437 0.46 -0.5
4,100,927 + Psyr_3437 0.47 -1.8
4,100,928 - Psyr_3437 0.48 +0.4
4,100,928 - Psyr_3437 0.48 -0.2
4,100,928 - Psyr_3437 0.48 +0.7
4,100,928 - Psyr_3437 0.48 -0.2
4,100,977 + Psyr_3437 0.54 +0.7
4,101,016 + Psyr_3437 0.59 -1.0
4,101,017 - Psyr_3437 0.60 -1.4
4,101,096 + Psyr_3437 0.70 +0.1
4,101,096 + Psyr_3437 0.70 +1.0
4,101,096 + Psyr_3437 0.70 -0.2
4,101,096 + Psyr_3437 0.70 -0.2
4,101,096 + Psyr_3437 0.70 -0.8
4,101,096 + Psyr_3437 0.70 +1.0
4,101,097 - Psyr_3437 0.70 +0.5
4,101,097 - Psyr_3437 0.70 -0.1
4,101,097 - Psyr_3437 0.70 +0.5
4,101,097 - Psyr_3437 0.70 -1.1
4,101,097 - Psyr_3437 0.70 +0.1
4,101,097 - Psyr_3437 0.70 -0.5
4,101,097 - Psyr_3437 0.70 -2.6
4,101,129 + Psyr_3437 0.75 -0.5
4,101,129 + Psyr_3437 0.75 -0.1
4,101,129 + Psyr_3437 0.75 +0.7
4,101,129 + Psyr_3437 0.75 +0.7
4,101,129 + Psyr_3437 0.75 +0.8
4,101,129 + Psyr_3437 0.75 +0.6
4,101,130 - Psyr_3437 0.75 +0.1
4,101,130 - Psyr_3437 0.75 -0.1
4,101,130 - Psyr_3437 0.75 +1.8
4,101,130 - Psyr_3437 0.75 +0.8
4,101,130 - Psyr_3437 0.75 +1.1
4,101,130 - Psyr_3437 0.75 -1.4
4,101,130 - Psyr_3437 0.75 -0.3
4,101,130 - Psyr_3437 0.75 -0.4
4,101,264 + +0.8
4,101,291 + -1.2
4,101,291 + +0.8
4,101,291 + +0.7
4,101,292 - -1.0
4,101,292 - +1.2
4,101,292 - -0.0
4,101,292 - +0.3

Or see this region's nucleotide sequence