Experiment: KB with Fusaric 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3318 and Psyr_3319 are separated by 159 nucleotides Psyr_3319 and Psyr_3320 are separated by 126 nucleotides Psyr_3320 and Psyr_3321 are separated by 7 nucleotides
Psyr_3318: Psyr_3318 - conserved hypothetical protein, at 3,969,899 to 3,971,116
_3318
Psyr_3319: Psyr_3319 - ThiJ/PfpI, at 3,971,276 to 3,971,959
_3319
Psyr_3320: Psyr_3320 - conserved hypothetical protein, at 3,972,086 to 3,972,235
_3320
Psyr_3321: Psyr_3321 - transcriptional regulator, LysR family, at 3,972,243 to 3,973,178
_3321
Position (kb)
3971
3972 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3970.566 kb on - strand, within Psyr_3318 at 3970.566 kb on - strand, within Psyr_3318 at 3970.694 kb on + strand, within Psyr_3318 at 3970.715 kb on + strand, within Psyr_3318 at 3970.730 kb on + strand, within Psyr_3318 at 3970.730 kb on + strand, within Psyr_3318 at 3970.823 kb on - strand, within Psyr_3318 at 3970.916 kb on + strand, within Psyr_3318 at 3970.916 kb on + strand, within Psyr_3318 at 3970.916 kb on + strand, within Psyr_3318 at 3970.916 kb on + strand, within Psyr_3318 at 3970.917 kb on - strand, within Psyr_3318 at 3970.917 kb on - strand, within Psyr_3318 at 3970.994 kb on + strand, within Psyr_3318 at 3970.995 kb on - strand at 3971.247 kb on + strand at 3971.375 kb on + strand, within Psyr_3319 at 3971.375 kb on + strand, within Psyr_3319 at 3971.376 kb on - strand, within Psyr_3319 at 3971.376 kb on - strand, within Psyr_3319 at 3971.694 kb on + strand, within Psyr_3319 at 3971.800 kb on - strand, within Psyr_3319 at 3971.844 kb on - strand, within Psyr_3319 at 3971.870 kb on + strand, within Psyr_3319 at 3971.871 kb on - strand, within Psyr_3319 at 3971.871 kb on - strand, within Psyr_3319 at 3971.874 kb on + strand, within Psyr_3319 at 3971.875 kb on - strand, within Psyr_3319 at 3972.020 kb on + strand at 3972.020 kb on + strand at 3972.020 kb on + strand at 3972.021 kb on - strand at 3972.472 kb on + strand, within Psyr_3321 at 3972.846 kb on + strand, within Psyr_3321 at 3972.851 kb on - strand, within Psyr_3321
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Fusaric 250 ug/ml remove 3,970,566 - Psyr_3318 0.55 +2.7 3,970,566 - Psyr_3318 0.55 -2.9 3,970,694 + Psyr_3318 0.65 +0.3 3,970,715 + Psyr_3318 0.67 -0.6 3,970,730 + Psyr_3318 0.68 +0.8 3,970,730 + Psyr_3318 0.68 +0.3 3,970,823 - Psyr_3318 0.76 -0.1 3,970,916 + Psyr_3318 0.83 +1.0 3,970,916 + Psyr_3318 0.83 -0.6 3,970,916 + Psyr_3318 0.83 -3.2 3,970,916 + Psyr_3318 0.83 -1.9 3,970,917 - Psyr_3318 0.84 -2.7 3,970,917 - Psyr_3318 0.84 -1.0 3,970,994 + Psyr_3318 0.90 +0.5 3,970,995 - +1.4 3,971,247 + -1.5 3,971,375 + Psyr_3319 0.14 -1.6 3,971,375 + Psyr_3319 0.14 -1.0 3,971,376 - Psyr_3319 0.15 +0.8 3,971,376 - Psyr_3319 0.15 +0.5 3,971,694 + Psyr_3319 0.61 +2.0 3,971,800 - Psyr_3319 0.77 -0.5 3,971,844 - Psyr_3319 0.83 +2.7 3,971,870 + Psyr_3319 0.87 +0.5 3,971,871 - Psyr_3319 0.87 +1.0 3,971,871 - Psyr_3319 0.87 +0.8 3,971,874 + Psyr_3319 0.87 +1.0 3,971,875 - Psyr_3319 0.88 +1.8 3,972,020 + +0.7 3,972,020 + -1.3 3,972,020 + -0.9 3,972,021 - +0.2 3,972,472 + Psyr_3321 0.24 -0.2 3,972,846 + Psyr_3321 0.64 -0.3 3,972,851 - Psyr_3321 0.65 +0.4
Or see this region's nucleotide sequence