Experiment: KB with Fusaric 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3012 and Psyr_3013 are separated by 157 nucleotides Psyr_3013 and Psyr_3014 are separated by 77 nucleotides Psyr_3014 and Psyr_3015 overlap by 1 nucleotides
Psyr_3012: Psyr_3012 - conserved hypothetical protein, at 3,606,415 to 3,606,681
_3012
Psyr_3013: Psyr_3013 - magnesium chelatase subunit ChlD, at 3,606,839 to 3,607,426
_3013
Psyr_3014: Psyr_3014 - protoporphyrin IX magnesium-chelatase, at 3,607,504 to 3,608,538
_3014
Psyr_3015: Psyr_3015 - cobaltochelatase CobN subunit, at 3,608,538 to 3,612,302
_3015
Position (kb) 3607
3608
3609 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 3606.584 kb on - strand, within Psyr_3012 at 3606.712 kb on + strand at 3607.313 kb on + strand, within Psyr_3013 at 3607.313 kb on + strand, within Psyr_3013 at 3607.313 kb on + strand, within Psyr_3013 at 3607.505 kb on + strand at 3608.210 kb on + strand, within Psyr_3014 at 3608.210 kb on + strand, within Psyr_3014 at 3608.210 kb on + strand, within Psyr_3014 at 3608.210 kb on + strand, within Psyr_3014 at 3608.210 kb on + strand, within Psyr_3014 at 3608.211 kb on - strand, within Psyr_3014 at 3608.211 kb on - strand, within Psyr_3014 at 3608.211 kb on - strand, within Psyr_3014 at 3608.550 kb on + strand at 3608.550 kb on + strand at 3608.550 kb on + strand at 3608.550 kb on + strand at 3608.550 kb on + strand at 3608.550 kb on + strand at 3608.551 kb on - strand at 3608.551 kb on - strand at 3608.551 kb on - strand at 3608.551 kb on - strand at 3608.551 kb on - strand at 3608.551 kb on - strand at 3608.551 kb on - strand at 3608.704 kb on + strand at 3608.810 kb on - strand at 3608.998 kb on + strand, within Psyr_3015 at 3608.998 kb on + strand, within Psyr_3015 at 3608.999 kb on - strand, within Psyr_3015 at 3609.119 kb on - strand, within Psyr_3015 at 3609.199 kb on - strand, within Psyr_3015 at 3609.212 kb on - strand, within Psyr_3015
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Fusaric 250 ug/ml remove 3,606,584 - Psyr_3012 0.63 -0.8 3,606,712 + +0.0 3,607,313 + Psyr_3013 0.81 -3.2 3,607,313 + Psyr_3013 0.81 -2.0 3,607,313 + Psyr_3013 0.81 -1.0 3,607,505 + +1.3 3,608,210 + Psyr_3014 0.68 -1.4 3,608,210 + Psyr_3014 0.68 -2.0 3,608,210 + Psyr_3014 0.68 +0.2 3,608,210 + Psyr_3014 0.68 +1.0 3,608,210 + Psyr_3014 0.68 +1.1 3,608,211 - Psyr_3014 0.68 +2.0 3,608,211 - Psyr_3014 0.68 +1.4 3,608,211 - Psyr_3014 0.68 -0.6 3,608,550 + +2.2 3,608,550 + +0.1 3,608,550 + -1.6 3,608,550 + +0.2 3,608,550 + +0.4 3,608,550 + +4.1 3,608,551 - -2.8 3,608,551 - -1.0 3,608,551 - +0.3 3,608,551 - +0.6 3,608,551 - -3.3 3,608,551 - -0.4 3,608,551 - +2.5 3,608,704 + +1.8 3,608,810 - +0.1 3,608,998 + Psyr_3015 0.12 -1.1 3,608,998 + Psyr_3015 0.12 +0.2 3,608,999 - Psyr_3015 0.12 +0.0 3,609,119 - Psyr_3015 0.15 +1.9 3,609,199 - Psyr_3015 0.18 -0.4 3,609,212 - Psyr_3015 0.18 +0.8
Or see this region's nucleotide sequence