Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2949

Experiment: KB with Fusaric 250 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2947 and Psyr_2948 are separated by 46 nucleotidesPsyr_2948 and Psyr_2949 are separated by 85 nucleotidesPsyr_2949 and Psyr_2950 are separated by 198 nucleotides Psyr_2947: Psyr_2947 - hypothetical protein, at 3,536,743 to 3,537,165 _2947 Psyr_2948: Psyr_2948 - Nitroreductase, at 3,537,212 to 3,537,856 _2948 Psyr_2949: Psyr_2949 - conserved hypothetical protein, at 3,537,942 to 3,538,526 _2949 Psyr_2950: Psyr_2950 - putative hydrolase signal peptide protein, at 3,538,725 to 3,539,672 _2950 Position (kb) 3537 3538 3539Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3536.970 kb on + strand, within Psyr_2947at 3536.984 kb on - strand, within Psyr_2947at 3536.984 kb on - strand, within Psyr_2947at 3536.986 kb on - strand, within Psyr_2947at 3537.011 kb on + strand, within Psyr_2947at 3537.011 kb on + strand, within Psyr_2947at 3537.012 kb on - strand, within Psyr_2947at 3537.012 kb on - strand, within Psyr_2947at 3537.012 kb on - strand, within Psyr_2947at 3537.133 kb on + strandat 3537.133 kb on + strandat 3537.134 kb on - strandat 3537.134 kb on - strandat 3537.134 kb on - strandat 3537.247 kb on + strandat 3537.247 kb on + strandat 3537.247 kb on + strandat 3537.248 kb on - strandat 3537.248 kb on - strandat 3537.248 kb on - strandat 3537.248 kb on - strandat 3537.248 kb on - strandat 3537.290 kb on + strand, within Psyr_2948at 3537.396 kb on + strand, within Psyr_2948at 3537.475 kb on + strand, within Psyr_2948at 3537.475 kb on + strand, within Psyr_2948at 3537.475 kb on + strand, within Psyr_2948at 3537.475 kb on + strand, within Psyr_2948at 3537.476 kb on - strand, within Psyr_2948at 3537.476 kb on - strand, within Psyr_2948at 3537.563 kb on + strand, within Psyr_2948at 3537.563 kb on + strand, within Psyr_2948at 3537.564 kb on - strand, within Psyr_2948at 3537.564 kb on - strand, within Psyr_2948at 3537.564 kb on - strand, within Psyr_2948at 3537.593 kb on - strand, within Psyr_2948at 3537.596 kb on + strand, within Psyr_2948at 3537.596 kb on + strand, within Psyr_2948at 3537.596 kb on + strand, within Psyr_2948at 3537.596 kb on + strand, within Psyr_2948at 3537.597 kb on - strand, within Psyr_2948at 3537.597 kb on - strand, within Psyr_2948at 3537.597 kb on - strand, within Psyr_2948at 3537.597 kb on - strand, within Psyr_2948at 3537.597 kb on - strand, within Psyr_2948at 3537.597 kb on - strand, within Psyr_2948at 3537.676 kb on + strand, within Psyr_2948at 3537.850 kb on + strandat 3537.854 kb on + strandat 3537.854 kb on + strandat 3538.100 kb on + strand, within Psyr_2949at 3538.100 kb on + strand, within Psyr_2949at 3538.100 kb on + strand, within Psyr_2949at 3538.101 kb on - strand, within Psyr_2949at 3538.156 kb on - strand, within Psyr_2949at 3538.174 kb on + strand, within Psyr_2949at 3538.174 kb on + strand, within Psyr_2949at 3538.175 kb on - strand, within Psyr_2949at 3538.175 kb on - strand, within Psyr_2949at 3538.206 kb on + strand, within Psyr_2949at 3538.388 kb on + strand, within Psyr_2949at 3538.388 kb on + strand, within Psyr_2949at 3538.388 kb on + strand, within Psyr_2949at 3538.388 kb on + strand, within Psyr_2949at 3538.389 kb on - strand, within Psyr_2949at 3538.389 kb on - strand, within Psyr_2949at 3538.389 kb on - strand, within Psyr_2949at 3538.464 kb on + strand, within Psyr_2949at 3538.464 kb on + strand, within Psyr_2949at 3538.465 kb on - strand, within Psyr_2949at 3538.535 kb on + strandat 3538.535 kb on + strandat 3538.535 kb on + strandat 3538.535 kb on + strandat 3538.536 kb on - strandat 3538.536 kb on - strandat 3538.536 kb on - strandat 3538.536 kb on - strandat 3538.706 kb on + strandat 3538.707 kb on - strandat 3538.707 kb on - strandat 3538.731 kb on + strandat 3538.738 kb on + strandat 3538.739 kb on - strandat 3538.814 kb on + strandat 3538.815 kb on - strandat 3538.815 kb on - strandat 3538.827 kb on - strand, within Psyr_2950at 3538.868 kb on + strand, within Psyr_2950at 3538.944 kb on + strand, within Psyr_2950at 3538.945 kb on - strand, within Psyr_2950at 3538.977 kb on + strand, within Psyr_2950at 3538.978 kb on - strand, within Psyr_2950at 3538.986 kb on + strand, within Psyr_2950at 3538.986 kb on + strand, within Psyr_2950at 3538.986 kb on + strand, within Psyr_2950at 3538.986 kb on + strand, within Psyr_2950at 3538.986 kb on + strand, within Psyr_2950at 3538.986 kb on + strand, within Psyr_2950at 3538.986 kb on + strand, within Psyr_2950at 3538.986 kb on + strand, within Psyr_2950at 3538.986 kb on + strand, within Psyr_2950at 3538.986 kb on + strand, within Psyr_2950at 3538.986 kb on + strand, within Psyr_2950at 3538.986 kb on + strand, within Psyr_2950at 3538.986 kb on + strand, within Psyr_2950at 3538.986 kb on + strand, within Psyr_2950at 3538.987 kb on - strand, within Psyr_2950at 3538.987 kb on - strand, within Psyr_2950at 3538.987 kb on - strand, within Psyr_2950at 3538.987 kb on - strand, within Psyr_2950at 3538.987 kb on - strand, within Psyr_2950at 3538.987 kb on - strand, within Psyr_2950at 3538.987 kb on - strand, within Psyr_2950at 3538.987 kb on - strand, within Psyr_2950at 3538.987 kb on - strand, within Psyr_2950at 3538.987 kb on - strand, within Psyr_2950at 3538.987 kb on - strand, within Psyr_2950at 3538.987 kb on - strand, within Psyr_2950at 3538.987 kb on - strand, within Psyr_2950at 3538.987 kb on - strand, within Psyr_2950at 3538.987 kb on - strand, within Psyr_2950at 3538.987 kb on - strand, within Psyr_2950at 3539.145 kb on + strand, within Psyr_2950at 3539.146 kb on - strand, within Psyr_2950at 3539.212 kb on - strand, within Psyr_2950at 3539.212 kb on - strand, within Psyr_2950at 3539.292 kb on + strand, within Psyr_2950at 3539.292 kb on + strand, within Psyr_2950at 3539.292 kb on + strand, within Psyr_2950at 3539.293 kb on - strand, within Psyr_2950at 3539.293 kb on - strand, within Psyr_2950at 3539.426 kb on + strand, within Psyr_2950at 3539.427 kb on - strand, within Psyr_2950at 3539.427 kb on - strand, within Psyr_2950at 3539.520 kb on + strand, within Psyr_2950

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Fusaric 250 ug/ml
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3,536,970 + Psyr_2947 0.54 -0.9
3,536,984 - Psyr_2947 0.57 -1.4
3,536,984 - Psyr_2947 0.57 -0.2
3,536,986 - Psyr_2947 0.57 -2.2
3,537,011 + Psyr_2947 0.63 -0.2
3,537,011 + Psyr_2947 0.63 +2.6
3,537,012 - Psyr_2947 0.64 -1.0
3,537,012 - Psyr_2947 0.64 -1.4
3,537,012 - Psyr_2947 0.64 +1.6
3,537,133 + +0.6
3,537,133 + -0.4
3,537,134 - +1.0
3,537,134 - -2.0
3,537,134 - +1.7
3,537,247 + -2.0
3,537,247 + -0.6
3,537,247 + -1.2
3,537,248 - -3.0
3,537,248 - -1.0
3,537,248 - -2.0
3,537,248 - +0.4
3,537,248 - +0.3
3,537,290 + Psyr_2948 0.12 -0.1
3,537,396 + Psyr_2948 0.29 -2.2
3,537,475 + Psyr_2948 0.41 +0.1
3,537,475 + Psyr_2948 0.41 -2.2
3,537,475 + Psyr_2948 0.41 -1.6
3,537,475 + Psyr_2948 0.41 +1.2
3,537,476 - Psyr_2948 0.41 +1.4
3,537,476 - Psyr_2948 0.41 -1.7
3,537,563 + Psyr_2948 0.54 -1.0
3,537,563 + Psyr_2948 0.54 -1.2
3,537,564 - Psyr_2948 0.55 +0.8
3,537,564 - Psyr_2948 0.55 -1.7
3,537,564 - Psyr_2948 0.55 -0.2
3,537,593 - Psyr_2948 0.59 -0.4
3,537,596 + Psyr_2948 0.60 +2.5
3,537,596 + Psyr_2948 0.60 -0.5
3,537,596 + Psyr_2948 0.60 -0.3
3,537,596 + Psyr_2948 0.60 -1.1
3,537,597 - Psyr_2948 0.60 -1.1
3,537,597 - Psyr_2948 0.60 -2.1
3,537,597 - Psyr_2948 0.60 -0.9
3,537,597 - Psyr_2948 0.60 +0.7
3,537,597 - Psyr_2948 0.60 +0.1
3,537,597 - Psyr_2948 0.60 +0.5
3,537,676 + Psyr_2948 0.72 -0.3
3,537,850 + -0.4
3,537,854 + -1.0
3,537,854 + -0.1
3,538,100 + Psyr_2949 0.27 -0.8
3,538,100 + Psyr_2949 0.27 +0.0
3,538,100 + Psyr_2949 0.27 +0.8
3,538,101 - Psyr_2949 0.27 -1.3
3,538,156 - Psyr_2949 0.37 +0.4
3,538,174 + Psyr_2949 0.40 -1.1
3,538,174 + Psyr_2949 0.40 +1.6
3,538,175 - Psyr_2949 0.40 +1.0
3,538,175 - Psyr_2949 0.40 +0.3
3,538,206 + Psyr_2949 0.45 +2.0
3,538,388 + Psyr_2949 0.76 +1.0
3,538,388 + Psyr_2949 0.76 +1.0
3,538,388 + Psyr_2949 0.76 -0.0
3,538,388 + Psyr_2949 0.76 +1.1
3,538,389 - Psyr_2949 0.76 -0.4
3,538,389 - Psyr_2949 0.76 +0.4
3,538,389 - Psyr_2949 0.76 +0.0
3,538,464 + Psyr_2949 0.89 +0.6
3,538,464 + Psyr_2949 0.89 -1.0
3,538,465 - Psyr_2949 0.89 +0.4
3,538,535 + +0.3
3,538,535 + +2.2
3,538,535 + +0.3
3,538,535 + -0.8
3,538,536 - +0.6
3,538,536 - -0.8
3,538,536 - -3.1
3,538,536 - -0.4
3,538,706 + -0.4
3,538,707 - +0.2
3,538,707 - +1.1
3,538,731 + -0.7
3,538,738 + -0.4
3,538,739 - -0.3
3,538,814 + -0.4
3,538,815 - +1.3
3,538,815 - +0.5
3,538,827 - Psyr_2950 0.11 +1.1
3,538,868 + Psyr_2950 0.15 +0.3
3,538,944 + Psyr_2950 0.23 +1.6
3,538,945 - Psyr_2950 0.23 -0.6
3,538,977 + Psyr_2950 0.27 +1.1
3,538,978 - Psyr_2950 0.27 -1.7
3,538,986 + Psyr_2950 0.28 -3.1
3,538,986 + Psyr_2950 0.28 -2.4
3,538,986 + Psyr_2950 0.28 -0.4
3,538,986 + Psyr_2950 0.28 -1.5
3,538,986 + Psyr_2950 0.28 +1.3
3,538,986 + Psyr_2950 0.28 +0.2
3,538,986 + Psyr_2950 0.28 -0.6
3,538,986 + Psyr_2950 0.28 -1.9
3,538,986 + Psyr_2950 0.28 -1.7
3,538,986 + Psyr_2950 0.28 -0.2
3,538,986 + Psyr_2950 0.28 +0.2
3,538,986 + Psyr_2950 0.28 +0.6
3,538,986 + Psyr_2950 0.28 -0.6
3,538,986 + Psyr_2950 0.28 +0.3
3,538,987 - Psyr_2950 0.28 +0.4
3,538,987 - Psyr_2950 0.28 -0.1
3,538,987 - Psyr_2950 0.28 +0.7
3,538,987 - Psyr_2950 0.28 +0.1
3,538,987 - Psyr_2950 0.28 +1.8
3,538,987 - Psyr_2950 0.28 +0.1
3,538,987 - Psyr_2950 0.28 -1.7
3,538,987 - Psyr_2950 0.28 -0.1
3,538,987 - Psyr_2950 0.28 -1.9
3,538,987 - Psyr_2950 0.28 -0.1
3,538,987 - Psyr_2950 0.28 -0.3
3,538,987 - Psyr_2950 0.28 -1.1
3,538,987 - Psyr_2950 0.28 -1.1
3,538,987 - Psyr_2950 0.28 +0.5
3,538,987 - Psyr_2950 0.28 +0.2
3,538,987 - Psyr_2950 0.28 +1.9
3,539,145 + Psyr_2950 0.44 -2.0
3,539,146 - Psyr_2950 0.44 -0.8
3,539,212 - Psyr_2950 0.51 +1.0
3,539,212 - Psyr_2950 0.51 -0.4
3,539,292 + Psyr_2950 0.60 -0.6
3,539,292 + Psyr_2950 0.60 -2.4
3,539,292 + Psyr_2950 0.60 +0.0
3,539,293 - Psyr_2950 0.60 +0.4
3,539,293 - Psyr_2950 0.60 -2.1
3,539,426 + Psyr_2950 0.74 -0.7
3,539,427 - Psyr_2950 0.74 -1.7
3,539,427 - Psyr_2950 0.74 -1.1
3,539,520 + Psyr_2950 0.84 +1.8

Or see this region's nucleotide sequence