Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2867

Experiment: KB with Fusaric 250 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2866 and Psyr_2867 are separated by 144 nucleotidesPsyr_2867 and Psyr_2868 overlap by 4 nucleotidesPsyr_2868 and Psyr_2869 are separated by 131 nucleotides Psyr_2866: Psyr_2866 - Secretion protein HlyD, at 3,440,050 to 3,441,252 _2866 Psyr_2867: Psyr_2867 - ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal, at 3,441,397 to 3,442,788 _2867 Psyr_2868: Psyr_2868 - Response regulator receiver:Transcriptional regulatory protein, C-terminal, at 3,442,785 to 3,443,468 _2868 Psyr_2869: Psyr_2869 - xenobiotic compound monooxygenase, DszA family, at 3,443,600 to 3,445,000 _2869 Position (kb) 3441 3442 3443Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3440.483 kb on + strand, within Psyr_2866at 3440.483 kb on + strand, within Psyr_2866at 3440.484 kb on - strand, within Psyr_2866at 3440.609 kb on + strand, within Psyr_2866at 3440.945 kb on + strand, within Psyr_2866at 3440.945 kb on + strand, within Psyr_2866at 3440.946 kb on - strand, within Psyr_2866at 3440.967 kb on - strand, within Psyr_2866at 3441.044 kb on - strand, within Psyr_2866at 3441.200 kb on + strandat 3441.200 kb on + strandat 3441.200 kb on + strandat 3441.200 kb on + strandat 3441.200 kb on + strandat 3441.201 kb on - strandat 3441.201 kb on - strandat 3441.201 kb on - strandat 3441.227 kb on + strandat 3441.227 kb on + strandat 3441.228 kb on - strandat 3441.361 kb on - strandat 3441.571 kb on + strand, within Psyr_2867at 3441.685 kb on - strand, within Psyr_2867at 3441.877 kb on + strand, within Psyr_2867at 3442.279 kb on + strand, within Psyr_2867at 3442.279 kb on + strand, within Psyr_2867at 3442.280 kb on - strand, within Psyr_2867at 3442.280 kb on - strand, within Psyr_2867at 3442.280 kb on - strand, within Psyr_2867at 3442.860 kb on + strand, within Psyr_2868at 3442.860 kb on + strand, within Psyr_2868at 3443.094 kb on + strand, within Psyr_2868at 3443.094 kb on + strand, within Psyr_2868at 3443.094 kb on + strand, within Psyr_2868at 3443.094 kb on + strand, within Psyr_2868at 3443.095 kb on - strand, within Psyr_2868at 3443.095 kb on - strand, within Psyr_2868at 3443.095 kb on - strand, within Psyr_2868at 3443.095 kb on - strand, within Psyr_2868at 3443.095 kb on - strand, within Psyr_2868at 3443.452 kb on - strandat 3443.496 kb on + strandat 3443.496 kb on + strandat 3443.501 kb on - strandat 3443.501 kb on - strandat 3443.564 kb on - strandat 3443.736 kb on + strandat 3443.737 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Fusaric 250 ug/ml
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3,440,483 + Psyr_2866 0.36 -1.5
3,440,483 + Psyr_2866 0.36 -0.1
3,440,484 - Psyr_2866 0.36 -0.9
3,440,609 + Psyr_2866 0.46 +0.2
3,440,945 + Psyr_2866 0.74 +0.3
3,440,945 + Psyr_2866 0.74 +0.1
3,440,946 - Psyr_2866 0.74 +0.9
3,440,967 - Psyr_2866 0.76 -0.1
3,441,044 - Psyr_2866 0.83 -0.6
3,441,200 + -0.2
3,441,200 + -1.2
3,441,200 + -0.3
3,441,200 + +0.1
3,441,200 + -0.2
3,441,201 - +0.7
3,441,201 - +0.2
3,441,201 - -1.1
3,441,227 + +0.7
3,441,227 + +0.7
3,441,228 - -2.0
3,441,361 - -0.3
3,441,571 + Psyr_2867 0.12 +1.6
3,441,685 - Psyr_2867 0.21 +3.6
3,441,877 + Psyr_2867 0.34 +1.6
3,442,279 + Psyr_2867 0.63 +1.6
3,442,279 + Psyr_2867 0.63 +0.4
3,442,280 - Psyr_2867 0.63 +0.0
3,442,280 - Psyr_2867 0.63 -1.2
3,442,280 - Psyr_2867 0.63 -1.7
3,442,860 + Psyr_2868 0.11 -0.6
3,442,860 + Psyr_2868 0.11 +0.2
3,443,094 + Psyr_2868 0.45 -0.2
3,443,094 + Psyr_2868 0.45 -1.2
3,443,094 + Psyr_2868 0.45 +0.8
3,443,094 + Psyr_2868 0.45 +0.6
3,443,095 - Psyr_2868 0.45 +1.4
3,443,095 - Psyr_2868 0.45 -0.5
3,443,095 - Psyr_2868 0.45 +0.2
3,443,095 - Psyr_2868 0.45 -1.1
3,443,095 - Psyr_2868 0.45 +1.2
3,443,452 - +2.2
3,443,496 + -0.6
3,443,496 + -0.4
3,443,501 - +0.7
3,443,501 - -1.2
3,443,564 - +1.4
3,443,736 + -0.5
3,443,737 - -0.6

Or see this region's nucleotide sequence