Experiment: KB with Fusaric 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2866 and Psyr_2867 are separated by 144 nucleotides Psyr_2867 and Psyr_2868 overlap by 4 nucleotides Psyr_2868 and Psyr_2869 are separated by 131 nucleotides
Psyr_2866: Psyr_2866 - Secretion protein HlyD, at 3,440,050 to 3,441,252
_2866
Psyr_2867: Psyr_2867 - ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal, at 3,441,397 to 3,442,788
_2867
Psyr_2868: Psyr_2868 - Response regulator receiver:Transcriptional regulatory protein, C-terminal, at 3,442,785 to 3,443,468
_2868
Psyr_2869: Psyr_2869 - xenobiotic compound monooxygenase, DszA family, at 3,443,600 to 3,445,000
_2869
Position (kb)
3441
3442
3443 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3440.483 kb on + strand, within Psyr_2866 at 3440.483 kb on + strand, within Psyr_2866 at 3440.484 kb on - strand, within Psyr_2866 at 3440.609 kb on + strand, within Psyr_2866 at 3440.945 kb on + strand, within Psyr_2866 at 3440.945 kb on + strand, within Psyr_2866 at 3440.946 kb on - strand, within Psyr_2866 at 3440.967 kb on - strand, within Psyr_2866 at 3441.044 kb on - strand, within Psyr_2866 at 3441.200 kb on + strand at 3441.200 kb on + strand at 3441.200 kb on + strand at 3441.200 kb on + strand at 3441.200 kb on + strand at 3441.201 kb on - strand at 3441.201 kb on - strand at 3441.201 kb on - strand at 3441.227 kb on + strand at 3441.227 kb on + strand at 3441.228 kb on - strand at 3441.361 kb on - strand at 3441.571 kb on + strand, within Psyr_2867 at 3441.685 kb on - strand, within Psyr_2867 at 3441.877 kb on + strand, within Psyr_2867 at 3442.279 kb on + strand, within Psyr_2867 at 3442.279 kb on + strand, within Psyr_2867 at 3442.280 kb on - strand, within Psyr_2867 at 3442.280 kb on - strand, within Psyr_2867 at 3442.280 kb on - strand, within Psyr_2867 at 3442.860 kb on + strand, within Psyr_2868 at 3442.860 kb on + strand, within Psyr_2868 at 3443.094 kb on + strand, within Psyr_2868 at 3443.094 kb on + strand, within Psyr_2868 at 3443.094 kb on + strand, within Psyr_2868 at 3443.094 kb on + strand, within Psyr_2868 at 3443.095 kb on - strand, within Psyr_2868 at 3443.095 kb on - strand, within Psyr_2868 at 3443.095 kb on - strand, within Psyr_2868 at 3443.095 kb on - strand, within Psyr_2868 at 3443.095 kb on - strand, within Psyr_2868 at 3443.452 kb on - strand at 3443.496 kb on + strand at 3443.496 kb on + strand at 3443.501 kb on - strand at 3443.501 kb on - strand at 3443.564 kb on - strand at 3443.736 kb on + strand at 3443.737 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Fusaric 250 ug/ml remove 3,440,483 + Psyr_2866 0.36 -1.5 3,440,483 + Psyr_2866 0.36 -0.1 3,440,484 - Psyr_2866 0.36 -0.9 3,440,609 + Psyr_2866 0.46 +0.2 3,440,945 + Psyr_2866 0.74 +0.3 3,440,945 + Psyr_2866 0.74 +0.1 3,440,946 - Psyr_2866 0.74 +0.9 3,440,967 - Psyr_2866 0.76 -0.1 3,441,044 - Psyr_2866 0.83 -0.6 3,441,200 + -0.2 3,441,200 + -1.2 3,441,200 + -0.3 3,441,200 + +0.1 3,441,200 + -0.2 3,441,201 - +0.7 3,441,201 - +0.2 3,441,201 - -1.1 3,441,227 + +0.7 3,441,227 + +0.7 3,441,228 - -2.0 3,441,361 - -0.3 3,441,571 + Psyr_2867 0.12 +1.6 3,441,685 - Psyr_2867 0.21 +3.6 3,441,877 + Psyr_2867 0.34 +1.6 3,442,279 + Psyr_2867 0.63 +1.6 3,442,279 + Psyr_2867 0.63 +0.4 3,442,280 - Psyr_2867 0.63 +0.0 3,442,280 - Psyr_2867 0.63 -1.2 3,442,280 - Psyr_2867 0.63 -1.7 3,442,860 + Psyr_2868 0.11 -0.6 3,442,860 + Psyr_2868 0.11 +0.2 3,443,094 + Psyr_2868 0.45 -0.2 3,443,094 + Psyr_2868 0.45 -1.2 3,443,094 + Psyr_2868 0.45 +0.8 3,443,094 + Psyr_2868 0.45 +0.6 3,443,095 - Psyr_2868 0.45 +1.4 3,443,095 - Psyr_2868 0.45 -0.5 3,443,095 - Psyr_2868 0.45 +0.2 3,443,095 - Psyr_2868 0.45 -1.1 3,443,095 - Psyr_2868 0.45 +1.2 3,443,452 - +2.2 3,443,496 + -0.6 3,443,496 + -0.4 3,443,501 - +0.7 3,443,501 - -1.2 3,443,564 - +1.4 3,443,736 + -0.5 3,443,737 - -0.6
Or see this region's nucleotide sequence