Experiment: KB with Fusaric 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2419 and Psyr_2420 are separated by 154 nucleotides Psyr_2420 and Psyr_2421 are separated by 283 nucleotides Psyr_2421 and Psyr_2422 overlap by 4 nucleotides Psyr_2422 and Psyr_2423 are separated by 100 nucleotides
Psyr_2419: Psyr_2419 - Protein of unknown function DUF480, at 2,801,530 to 2,802,204
_2419
Psyr_2420: Psyr_2420 - conserved hypothetical protein, at 2,802,359 to 2,802,868
_2420
Psyr_2421: Psyr_2421 - Major facilitator superfamily, at 2,803,152 to 2,804,306
_2421
Psyr_2422: Psyr_2422 - transcriptional regulator, LysR family, at 2,804,303 to 2,805,205
_2422
Psyr_2423: Psyr_2423 - hypothetical protein, at 2,805,306 to 2,805,578
_2423
Position (kb)
2803
2804
2805 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2802.328 kb on - strand at 2802.328 kb on - strand at 2802.328 kb on - strand at 2802.329 kb on + strand at 2802.329 kb on + strand at 2802.330 kb on - strand at 2802.353 kb on + strand at 2802.353 kb on + strand at 2802.354 kb on - strand at 2802.354 kb on - strand at 2802.354 kb on - strand at 2802.354 kb on - strand at 2802.364 kb on + strand at 2802.364 kb on + strand at 2802.365 kb on - strand at 2802.365 kb on - strand at 2802.365 kb on - strand at 2802.374 kb on + strand at 2802.594 kb on - strand, within Psyr_2420 at 2802.594 kb on - strand, within Psyr_2420 at 2802.755 kb on + strand, within Psyr_2420 at 2802.756 kb on - strand, within Psyr_2420 at 2802.756 kb on - strand, within Psyr_2420 at 2802.756 kb on - strand, within Psyr_2420 at 2802.767 kb on + strand, within Psyr_2420 at 2802.767 kb on + strand, within Psyr_2420 at 2802.807 kb on - strand, within Psyr_2420 at 2802.917 kb on - strand at 2802.917 kb on - strand at 2802.917 kb on - strand at 2802.934 kb on + strand at 2803.087 kb on + strand at 2803.088 kb on - strand at 2803.088 kb on - strand at 2803.147 kb on + strand at 2803.148 kb on - strand at 2803.148 kb on - strand at 2803.422 kb on - strand, within Psyr_2421 at 2803.573 kb on + strand, within Psyr_2421 at 2803.573 kb on + strand, within Psyr_2421 at 2803.681 kb on - strand, within Psyr_2421 at 2803.681 kb on - strand, within Psyr_2421 at 2803.681 kb on - strand, within Psyr_2421 at 2803.809 kb on + strand, within Psyr_2421 at 2803.809 kb on + strand, within Psyr_2421 at 2803.809 kb on + strand, within Psyr_2421 at 2803.809 kb on + strand, within Psyr_2421 at 2803.810 kb on - strand, within Psyr_2421 at 2803.810 kb on - strand, within Psyr_2421 at 2803.811 kb on + strand, within Psyr_2421 at 2803.811 kb on + strand, within Psyr_2421 at 2803.811 kb on + strand, within Psyr_2421 at 2803.811 kb on + strand, within Psyr_2421 at 2803.811 kb on + strand, within Psyr_2421 at 2803.811 kb on + strand, within Psyr_2421 at 2803.811 kb on + strand, within Psyr_2421 at 2803.812 kb on - strand, within Psyr_2421 at 2803.812 kb on - strand, within Psyr_2421 at 2803.812 kb on - strand, within Psyr_2421 at 2803.812 kb on - strand, within Psyr_2421 at 2803.812 kb on - strand, within Psyr_2421 at 2803.812 kb on - strand, within Psyr_2421 at 2803.812 kb on - strand, within Psyr_2421 at 2803.812 kb on - strand, within Psyr_2421 at 2803.815 kb on + strand, within Psyr_2421 at 2803.815 kb on + strand, within Psyr_2421 at 2803.815 kb on + strand, within Psyr_2421 at 2803.816 kb on - strand, within Psyr_2421 at 2803.816 kb on - strand, within Psyr_2421 at 2803.816 kb on - strand, within Psyr_2421 at 2804.394 kb on + strand, within Psyr_2422 at 2804.394 kb on + strand, within Psyr_2422 at 2804.394 kb on + strand, within Psyr_2422 at 2804.395 kb on - strand, within Psyr_2422 at 2804.395 kb on - strand, within Psyr_2422 at 2804.395 kb on - strand, within Psyr_2422 at 2804.419 kb on + strand, within Psyr_2422 at 2804.420 kb on - strand, within Psyr_2422 at 2804.435 kb on + strand, within Psyr_2422 at 2805.195 kb on + strand at 2805.205 kb on + strand at 2805.206 kb on - strand at 2805.234 kb on + strand at 2805.278 kb on + strand at 2805.279 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Fusaric 250 ug/ml remove 2,802,328 - +0.3 2,802,328 - +0.1 2,802,328 - -0.4 2,802,329 + -0.8 2,802,329 + +0.3 2,802,330 - +1.1 2,802,353 + -1.7 2,802,353 + +2.2 2,802,354 - +0.6 2,802,354 - -1.5 2,802,354 - -0.0 2,802,354 - -0.2 2,802,364 + +0.6 2,802,364 + -0.9 2,802,365 - -0.6 2,802,365 - -0.0 2,802,365 - -0.2 2,802,374 + +0.5 2,802,594 - Psyr_2420 0.46 +0.7 2,802,594 - Psyr_2420 0.46 +1.2 2,802,755 + Psyr_2420 0.78 +1.0 2,802,756 - Psyr_2420 0.78 +1.0 2,802,756 - Psyr_2420 0.78 +1.2 2,802,756 - Psyr_2420 0.78 -1.6 2,802,767 + Psyr_2420 0.80 -0.4 2,802,767 + Psyr_2420 0.80 -0.2 2,802,807 - Psyr_2420 0.88 +0.6 2,802,917 - -1.3 2,802,917 - -3.5 2,802,917 - +1.1 2,802,934 + -0.2 2,803,087 + +0.4 2,803,088 - -0.1 2,803,088 - +1.3 2,803,147 + -0.0 2,803,148 - -1.2 2,803,148 - +0.8 2,803,422 - Psyr_2421 0.23 +1.5 2,803,573 + Psyr_2421 0.36 +0.8 2,803,573 + Psyr_2421 0.36 +0.4 2,803,681 - Psyr_2421 0.46 -0.2 2,803,681 - Psyr_2421 0.46 -0.1 2,803,681 - Psyr_2421 0.46 -0.5 2,803,809 + Psyr_2421 0.57 +0.4 2,803,809 + Psyr_2421 0.57 +1.8 2,803,809 + Psyr_2421 0.57 +0.9 2,803,809 + Psyr_2421 0.57 +1.4 2,803,810 - Psyr_2421 0.57 -3.2 2,803,810 - Psyr_2421 0.57 -0.8 2,803,811 + Psyr_2421 0.57 +0.1 2,803,811 + Psyr_2421 0.57 +1.4 2,803,811 + Psyr_2421 0.57 +0.1 2,803,811 + Psyr_2421 0.57 +0.6 2,803,811 + Psyr_2421 0.57 +0.9 2,803,811 + Psyr_2421 0.57 -0.3 2,803,811 + Psyr_2421 0.57 +1.8 2,803,812 - Psyr_2421 0.57 +0.1 2,803,812 - Psyr_2421 0.57 +1.5 2,803,812 - Psyr_2421 0.57 +0.5 2,803,812 - Psyr_2421 0.57 +2.5 2,803,812 - Psyr_2421 0.57 +0.6 2,803,812 - Psyr_2421 0.57 +1.3 2,803,812 - Psyr_2421 0.57 -1.5 2,803,812 - Psyr_2421 0.57 -0.5 2,803,815 + Psyr_2421 0.57 +1.9 2,803,815 + Psyr_2421 0.57 +0.8 2,803,815 + Psyr_2421 0.57 -1.0 2,803,816 - Psyr_2421 0.57 +1.8 2,803,816 - Psyr_2421 0.57 -2.2 2,803,816 - Psyr_2421 0.57 -0.2 2,804,394 + Psyr_2422 0.10 +1.4 2,804,394 + Psyr_2422 0.10 -1.5 2,804,394 + Psyr_2422 0.10 +0.2 2,804,395 - Psyr_2422 0.10 -0.4 2,804,395 - Psyr_2422 0.10 +0.5 2,804,395 - Psyr_2422 0.10 +1.0 2,804,419 + Psyr_2422 0.13 -0.7 2,804,420 - Psyr_2422 0.13 -1.7 2,804,435 + Psyr_2422 0.15 -2.2 2,805,195 + -0.3 2,805,205 + +0.1 2,805,206 - +2.6 2,805,234 + +1.1 2,805,278 + -0.9 2,805,279 - +0.5
Or see this region's nucleotide sequence