Experiment: KB with Fusaric 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1804 and Psyr_1805 are separated by 365 nucleotides Psyr_1805 and Psyr_1806 are separated by 5 nucleotides Psyr_1806 and Psyr_1807 are separated by 201 nucleotides
Psyr_1804: Psyr_1804 - conserved hypothetical protein, at 2,077,457 to 2,078,242
_1804
Psyr_1805: Psyr_1805 - Protein of unknown function DUF989, at 2,078,608 to 2,079,900
_1805
Psyr_1806: Psyr_1806 - Ureidoglycolate hydrolase, at 2,079,906 to 2,080,418
_1806
Psyr_1807: Psyr_1807 - Allantoicase, at 2,080,620 to 2,081,615
_1807
Position (kb)
2078
2079
2080 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2077.608 kb on + strand, within Psyr_1804 at 2077.608 kb on + strand, within Psyr_1804 at 2077.608 kb on + strand, within Psyr_1804 at 2077.608 kb on + strand, within Psyr_1804 at 2077.608 kb on + strand, within Psyr_1804 at 2077.609 kb on - strand, within Psyr_1804 at 2077.609 kb on - strand, within Psyr_1804 at 2077.609 kb on - strand, within Psyr_1804 at 2077.609 kb on - strand, within Psyr_1804 at 2077.609 kb on - strand, within Psyr_1804 at 2077.609 kb on - strand, within Psyr_1804 at 2077.609 kb on - strand, within Psyr_1804 at 2077.609 kb on - strand, within Psyr_1804 at 2077.609 kb on - strand, within Psyr_1804 at 2077.644 kb on + strand, within Psyr_1804 at 2077.644 kb on + strand, within Psyr_1804 at 2077.644 kb on + strand, within Psyr_1804 at 2077.645 kb on - strand, within Psyr_1804 at 2077.731 kb on + strand, within Psyr_1804 at 2077.732 kb on - strand, within Psyr_1804 at 2077.797 kb on + strand, within Psyr_1804 at 2077.890 kb on + strand, within Psyr_1804 at 2077.890 kb on + strand, within Psyr_1804 at 2077.890 kb on + strand, within Psyr_1804 at 2077.891 kb on - strand, within Psyr_1804 at 2077.986 kb on + strand, within Psyr_1804 at 2077.986 kb on + strand, within Psyr_1804 at 2077.987 kb on - strand, within Psyr_1804 at 2077.987 kb on - strand, within Psyr_1804 at 2077.987 kb on - strand, within Psyr_1804 at 2078.026 kb on - strand, within Psyr_1804 at 2078.089 kb on + strand, within Psyr_1804 at 2078.090 kb on - strand, within Psyr_1804 at 2078.140 kb on - strand, within Psyr_1804 at 2078.149 kb on + strand, within Psyr_1804 at 2078.152 kb on + strand, within Psyr_1804 at 2078.152 kb on + strand, within Psyr_1804 at 2078.153 kb on - strand, within Psyr_1804 at 2078.153 kb on - strand, within Psyr_1804 at 2078.153 kb on - strand, within Psyr_1804 at 2078.217 kb on - strand at 2078.233 kb on + strand at 2078.261 kb on + strand at 2078.261 kb on + strand at 2078.262 kb on - strand at 2078.262 kb on - strand at 2078.262 kb on - strand at 2078.262 kb on - strand at 2078.262 kb on - strand at 2078.290 kb on + strand at 2078.290 kb on + strand at 2078.290 kb on + strand at 2078.290 kb on + strand at 2078.290 kb on + strand at 2078.291 kb on - strand at 2078.291 kb on - strand at 2078.291 kb on - strand at 2078.291 kb on - strand at 2078.291 kb on - strand at 2078.291 kb on - strand at 2078.320 kb on - strand at 2078.388 kb on + strand at 2078.644 kb on + strand at 2078.680 kb on - strand at 2078.869 kb on - strand, within Psyr_1805 at 2079.026 kb on + strand, within Psyr_1805 at 2079.026 kb on + strand, within Psyr_1805 at 2079.026 kb on + strand, within Psyr_1805 at 2079.026 kb on + strand, within Psyr_1805 at 2079.026 kb on + strand, within Psyr_1805 at 2079.027 kb on - strand, within Psyr_1805 at 2079.027 kb on - strand, within Psyr_1805 at 2079.027 kb on - strand, within Psyr_1805 at 2079.027 kb on - strand, within Psyr_1805 at 2079.096 kb on + strand, within Psyr_1805 at 2079.104 kb on + strand, within Psyr_1805 at 2079.105 kb on - strand, within Psyr_1805 at 2079.105 kb on - strand, within Psyr_1805 at 2079.158 kb on + strand, within Psyr_1805 at 2079.159 kb on - strand, within Psyr_1805 at 2079.159 kb on - strand, within Psyr_1805 at 2079.171 kb on - strand, within Psyr_1805 at 2079.224 kb on + strand, within Psyr_1805 at 2079.224 kb on + strand, within Psyr_1805 at 2079.224 kb on + strand, within Psyr_1805 at 2079.224 kb on + strand, within Psyr_1805 at 2079.224 kb on + strand, within Psyr_1805 at 2079.225 kb on - strand, within Psyr_1805 at 2079.225 kb on - strand, within Psyr_1805 at 2079.225 kb on - strand, within Psyr_1805 at 2079.225 kb on - strand, within Psyr_1805 at 2079.384 kb on - strand, within Psyr_1805 at 2079.404 kb on - strand, within Psyr_1805 at 2079.404 kb on - strand, within Psyr_1805 at 2079.504 kb on - strand, within Psyr_1805 at 2079.588 kb on - strand, within Psyr_1805 at 2079.651 kb on - strand, within Psyr_1805 at 2079.651 kb on - strand, within Psyr_1805 at 2079.707 kb on + strand, within Psyr_1805 at 2079.707 kb on + strand, within Psyr_1805 at 2079.707 kb on + strand, within Psyr_1805 at 2079.708 kb on - strand, within Psyr_1805 at 2079.708 kb on - strand, within Psyr_1805 at 2079.708 kb on - strand, within Psyr_1805 at 2079.722 kb on + strand, within Psyr_1805 at 2079.722 kb on + strand, within Psyr_1805 at 2079.723 kb on - strand, within Psyr_1805 at 2079.723 kb on - strand, within Psyr_1805 at 2079.723 kb on - strand, within Psyr_1805 at 2079.723 kb on - strand, within Psyr_1805 at 2079.812 kb on + strand at 2079.812 kb on + strand at 2079.813 kb on - strand at 2079.813 kb on - strand at 2079.813 kb on - strand at 2079.888 kb on + strand at 2079.888 kb on + strand at 2079.888 kb on + strand at 2079.888 kb on + strand at 2079.888 kb on + strand at 2079.888 kb on + strand at 2079.888 kb on + strand at 2079.888 kb on + strand at 2079.888 kb on + strand at 2079.888 kb on + strand at 2079.889 kb on - strand at 2079.889 kb on - strand at 2079.889 kb on - strand at 2079.889 kb on - strand at 2079.889 kb on - strand at 2079.889 kb on - strand at 2079.889 kb on - strand at 2079.889 kb on - strand at 2079.889 kb on - strand at 2079.889 kb on - strand at 2079.889 kb on - strand at 2079.889 kb on - strand at 2079.889 kb on - strand at 2079.889 kb on - strand at 2079.958 kb on + strand, within Psyr_1806 at 2079.958 kb on + strand, within Psyr_1806 at 2079.958 kb on + strand, within Psyr_1806 at 2079.958 kb on + strand, within Psyr_1806 at 2079.959 kb on - strand, within Psyr_1806 at 2080.459 kb on + strand at 2080.462 kb on - strand at 2080.462 kb on - strand at 2080.520 kb on + strand at 2080.521 kb on - strand at 2080.552 kb on + strand at 2080.553 kb on - strand at 2080.573 kb on + strand at 2080.573 kb on + strand at 2080.573 kb on + strand at 2080.573 kb on + strand at 2080.573 kb on + strand at 2080.573 kb on + strand at 2080.573 kb on + strand at 2080.573 kb on + strand at 2080.574 kb on - strand at 2080.574 kb on - strand at 2080.574 kb on - strand at 2080.574 kb on - strand at 2080.574 kb on - strand at 2080.574 kb on - strand at 2080.574 kb on - strand at 2080.574 kb on - strand at 2080.574 kb on - strand at 2080.574 kb on - strand at 2080.574 kb on - strand at 2080.574 kb on - strand at 2080.574 kb on - strand at 2080.577 kb on + strand at 2080.577 kb on + strand at 2080.577 kb on + strand at 2080.577 kb on + strand at 2080.577 kb on + strand at 2080.577 kb on + strand at 2080.577 kb on + strand at 2080.577 kb on + strand at 2080.577 kb on + strand at 2080.577 kb on + strand at 2080.577 kb on + strand at 2080.577 kb on + strand at 2080.577 kb on + strand at 2080.577 kb on + strand at 2080.577 kb on + strand at 2080.577 kb on + strand at 2080.577 kb on + strand at 2080.577 kb on + strand at 2080.578 kb on - strand at 2080.578 kb on - strand at 2080.578 kb on - strand at 2080.578 kb on - strand at 2080.578 kb on - strand at 2080.578 kb on - strand at 2080.578 kb on - strand at 2080.578 kb on - strand at 2080.578 kb on - strand at 2080.578 kb on - strand at 2080.578 kb on - strand at 2080.578 kb on - strand at 2080.578 kb on - strand at 2080.578 kb on - strand at 2080.578 kb on - strand at 2080.578 kb on - strand at 2080.578 kb on - strand at 2080.578 kb on - strand at 2080.578 kb on - strand at 2080.578 kb on - strand at 2080.578 kb on - strand at 2080.579 kb on + strand at 2080.579 kb on + strand at 2080.579 kb on + strand at 2080.580 kb on - strand at 2080.580 kb on - strand at 2080.580 kb on - strand at 2080.580 kb on - strand at 2080.580 kb on - strand at 2080.580 kb on - strand at 2080.598 kb on - strand at 2080.611 kb on + strand at 2080.675 kb on - strand at 2080.859 kb on + strand, within Psyr_1807 at 2080.860 kb on - strand, within Psyr_1807 at 2080.860 kb on - strand, within Psyr_1807 at 2080.860 kb on - strand, within Psyr_1807 at 2080.860 kb on - strand, within Psyr_1807 at 2080.860 kb on - strand, within Psyr_1807
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Fusaric 250 ug/ml remove 2,077,608 + Psyr_1804 0.19 +0.3 2,077,608 + Psyr_1804 0.19 +0.0 2,077,608 + Psyr_1804 0.19 +2.8 2,077,608 + Psyr_1804 0.19 +1.5 2,077,608 + Psyr_1804 0.19 +0.6 2,077,609 - Psyr_1804 0.19 +2.5 2,077,609 - Psyr_1804 0.19 +1.4 2,077,609 - Psyr_1804 0.19 -0.9 2,077,609 - Psyr_1804 0.19 -1.4 2,077,609 - Psyr_1804 0.19 -0.7 2,077,609 - Psyr_1804 0.19 +1.7 2,077,609 - Psyr_1804 0.19 +1.2 2,077,609 - Psyr_1804 0.19 -2.8 2,077,609 - Psyr_1804 0.19 +0.6 2,077,644 + Psyr_1804 0.24 +2.9 2,077,644 + Psyr_1804 0.24 +0.6 2,077,644 + Psyr_1804 0.24 +0.9 2,077,645 - Psyr_1804 0.24 +1.3 2,077,731 + Psyr_1804 0.35 -0.6 2,077,732 - Psyr_1804 0.35 +2.0 2,077,797 + Psyr_1804 0.43 +0.0 2,077,890 + Psyr_1804 0.55 +1.2 2,077,890 + Psyr_1804 0.55 +0.1 2,077,890 + Psyr_1804 0.55 +2.2 2,077,891 - Psyr_1804 0.55 -0.3 2,077,986 + Psyr_1804 0.67 -0.4 2,077,986 + Psyr_1804 0.67 -0.8 2,077,987 - Psyr_1804 0.67 +1.0 2,077,987 - Psyr_1804 0.67 -2.6 2,077,987 - Psyr_1804 0.67 -0.1 2,078,026 - Psyr_1804 0.72 +0.2 2,078,089 + Psyr_1804 0.80 +1.8 2,078,090 - Psyr_1804 0.81 +0.1 2,078,140 - Psyr_1804 0.87 +0.6 2,078,149 + Psyr_1804 0.88 +1.2 2,078,152 + Psyr_1804 0.88 -0.6 2,078,152 + Psyr_1804 0.88 +0.2 2,078,153 - Psyr_1804 0.89 -1.9 2,078,153 - Psyr_1804 0.89 +1.5 2,078,153 - Psyr_1804 0.89 +0.1 2,078,217 - -0.6 2,078,233 + +0.9 2,078,261 + -1.3 2,078,261 + -0.6 2,078,262 - -0.5 2,078,262 - -0.2 2,078,262 - -0.1 2,078,262 - +0.5 2,078,262 - -0.4 2,078,290 + -0.1 2,078,290 + +0.1 2,078,290 + -2.3 2,078,290 + +1.1 2,078,290 + -1.3 2,078,291 - -1.8 2,078,291 - -1.1 2,078,291 - -1.1 2,078,291 - -2.6 2,078,291 - +0.6 2,078,291 - +1.3 2,078,320 - -1.5 2,078,388 + -0.1 2,078,644 + -1.3 2,078,680 - -0.2 2,078,869 - Psyr_1805 0.20 -0.2 2,079,026 + Psyr_1805 0.32 -0.6 2,079,026 + Psyr_1805 0.32 +0.4 2,079,026 + Psyr_1805 0.32 -1.2 2,079,026 + Psyr_1805 0.32 -2.4 2,079,026 + Psyr_1805 0.32 +0.8 2,079,027 - Psyr_1805 0.32 +0.1 2,079,027 - Psyr_1805 0.32 +0.1 2,079,027 - Psyr_1805 0.32 -3.1 2,079,027 - Psyr_1805 0.32 +1.2 2,079,096 + Psyr_1805 0.38 +0.5 2,079,104 + Psyr_1805 0.38 -0.7 2,079,105 - Psyr_1805 0.38 +0.2 2,079,105 - Psyr_1805 0.38 +0.1 2,079,158 + Psyr_1805 0.43 -0.5 2,079,159 - Psyr_1805 0.43 +0.5 2,079,159 - Psyr_1805 0.43 +1.7 2,079,171 - Psyr_1805 0.44 -2.6 2,079,224 + Psyr_1805 0.48 -2.1 2,079,224 + Psyr_1805 0.48 -2.9 2,079,224 + Psyr_1805 0.48 -0.6 2,079,224 + Psyr_1805 0.48 -0.9 2,079,224 + Psyr_1805 0.48 -0.7 2,079,225 - Psyr_1805 0.48 -0.7 2,079,225 - Psyr_1805 0.48 -0.8 2,079,225 - Psyr_1805 0.48 +1.2 2,079,225 - Psyr_1805 0.48 -1.1 2,079,384 - Psyr_1805 0.60 -2.6 2,079,404 - Psyr_1805 0.62 +1.5 2,079,404 - Psyr_1805 0.62 -0.1 2,079,504 - Psyr_1805 0.69 +1.0 2,079,588 - Psyr_1805 0.76 +0.6 2,079,651 - Psyr_1805 0.81 +1.4 2,079,651 - Psyr_1805 0.81 -0.7 2,079,707 + Psyr_1805 0.85 -1.2 2,079,707 + Psyr_1805 0.85 +0.2 2,079,707 + Psyr_1805 0.85 +0.4 2,079,708 - Psyr_1805 0.85 +0.2 2,079,708 - Psyr_1805 0.85 +0.5 2,079,708 - Psyr_1805 0.85 -0.3 2,079,722 + Psyr_1805 0.86 -1.6 2,079,722 + Psyr_1805 0.86 -0.9 2,079,723 - Psyr_1805 0.86 -3.5 2,079,723 - Psyr_1805 0.86 -3.0 2,079,723 - Psyr_1805 0.86 -0.1 2,079,723 - Psyr_1805 0.86 -0.9 2,079,812 + -1.5 2,079,812 + -1.8 2,079,813 - -2.8 2,079,813 - +0.1 2,079,813 - +1.6 2,079,888 + +0.7 2,079,888 + -1.6 2,079,888 + -0.4 2,079,888 + +0.5 2,079,888 + +1.0 2,079,888 + -1.5 2,079,888 + +1.9 2,079,888 + -0.5 2,079,888 + -0.2 2,079,888 + +2.3 2,079,889 - -1.2 2,079,889 - -1.5 2,079,889 - +0.8 2,079,889 - +0.8 2,079,889 - +1.0 2,079,889 - -0.4 2,079,889 - -0.1 2,079,889 - +0.3 2,079,889 - +0.3 2,079,889 - +0.4 2,079,889 - -1.8 2,079,889 - -0.1 2,079,889 - +1.2 2,079,889 - +1.2 2,079,958 + Psyr_1806 0.10 +0.2 2,079,958 + Psyr_1806 0.10 -0.1 2,079,958 + Psyr_1806 0.10 -0.9 2,079,958 + Psyr_1806 0.10 -1.9 2,079,959 - Psyr_1806 0.10 -0.3 2,080,459 + -2.6 2,080,462 - +0.4 2,080,462 - -0.2 2,080,520 + -0.6 2,080,521 - +3.7 2,080,552 + -2.1 2,080,553 - -1.1 2,080,573 + +0.9 2,080,573 + +0.3 2,080,573 + +0.5 2,080,573 + -1.0 2,080,573 + -1.3 2,080,573 + -0.4 2,080,573 + +1.3 2,080,573 + +0.1 2,080,574 - +1.8 2,080,574 - +1.5 2,080,574 - -1.0 2,080,574 - -0.4 2,080,574 - +1.6 2,080,574 - +1.3 2,080,574 - -1.2 2,080,574 - -0.7 2,080,574 - +0.6 2,080,574 - +2.7 2,080,574 - +0.5 2,080,574 - +0.3 2,080,574 - -3.1 2,080,577 + +1.7 2,080,577 + -1.6 2,080,577 + +0.5 2,080,577 + +1.6 2,080,577 + -0.3 2,080,577 + +0.2 2,080,577 + +1.3 2,080,577 + +1.3 2,080,577 + +0.7 2,080,577 + +1.6 2,080,577 + +1.0 2,080,577 + +1.5 2,080,577 + +1.2 2,080,577 + -0.5 2,080,577 + -0.9 2,080,577 + +0.7 2,080,577 + -2.3 2,080,577 + +1.0 2,080,578 - -0.8 2,080,578 - +0.0 2,080,578 - +0.2 2,080,578 - -0.1 2,080,578 - -0.8 2,080,578 - +2.1 2,080,578 - +0.9 2,080,578 - -1.5 2,080,578 - -0.6 2,080,578 - -0.9 2,080,578 - +0.1 2,080,578 - +0.2 2,080,578 - +1.6 2,080,578 - -1.1 2,080,578 - +1.7 2,080,578 - -1.1 2,080,578 - +1.8 2,080,578 - -0.6 2,080,578 - -0.5 2,080,578 - -3.8 2,080,578 - -0.3 2,080,579 + +0.1 2,080,579 + +0.6 2,080,579 + +0.0 2,080,580 - -1.2 2,080,580 - -0.4 2,080,580 - -0.6 2,080,580 - -0.9 2,080,580 - -0.2 2,080,580 - -0.0 2,080,598 - +1.4 2,080,611 + +0.7 2,080,675 - +1.7 2,080,859 + Psyr_1807 0.24 +0.0 2,080,860 - Psyr_1807 0.24 +0.7 2,080,860 - Psyr_1807 0.24 +0.3 2,080,860 - Psyr_1807 0.24 -0.4 2,080,860 - Psyr_1807 0.24 +0.1 2,080,860 - Psyr_1807 0.24 -0.4
Or see this region's nucleotide sequence