Experiment: KB with Fusaric 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0790 and Psyr_0791 are separated by 216 nucleotides Psyr_0791 and Psyr_0792 overlap by 4 nucleotides Psyr_0792 and Psyr_0793 are separated by 90 nucleotides
Psyr_0790: Psyr_0790 - FAD-dependent pyridine nucleotide-disulfide oxidoreductase, at 897,200 to 898,498
_0790
Psyr_0791: Psyr_0791 - MOSC, at 898,715 to 899,248
_0791
Psyr_0792: Psyr_0792 - conserved hypothetical protein, at 899,245 to 899,874
_0792
Psyr_0793: Psyr_0793 - conserved hypothetical protein, at 899,965 to 900,462
_0793
Position (kb) 898
899
900 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 897.909 kb on + strand, within Psyr_0790 at 898.035 kb on + strand, within Psyr_0790 at 898.035 kb on + strand, within Psyr_0790 at 898.305 kb on + strand, within Psyr_0790 at 898.305 kb on + strand, within Psyr_0790 at 898.305 kb on + strand, within Psyr_0790 at 898.305 kb on + strand, within Psyr_0790 at 898.306 kb on - strand, within Psyr_0790 at 898.306 kb on - strand, within Psyr_0790 at 898.306 kb on - strand, within Psyr_0790 at 898.306 kb on - strand, within Psyr_0790 at 898.306 kb on - strand, within Psyr_0790 at 898.306 kb on - strand, within Psyr_0790 at 898.323 kb on + strand, within Psyr_0790 at 898.324 kb on - strand, within Psyr_0790 at 898.324 kb on - strand, within Psyr_0790 at 898.372 kb on + strand at 898.372 kb on + strand at 898.373 kb on - strand at 898.373 kb on - strand at 898.480 kb on + strand at 898.486 kb on + strand at 898.486 kb on + strand at 898.487 kb on - strand at 898.487 kb on - strand at 898.487 kb on - strand at 898.487 kb on - strand at 898.505 kb on + strand at 898.506 kb on - strand at 898.565 kb on + strand at 898.565 kb on + strand at 898.584 kb on - strand at 898.655 kb on + strand at 898.656 kb on - strand at 898.656 kb on - strand at 898.704 kb on + strand at 898.805 kb on + strand, within Psyr_0791 at 898.806 kb on - strand, within Psyr_0791 at 899.248 kb on + strand at 899.248 kb on + strand at 899.248 kb on + strand at 899.248 kb on + strand at 899.249 kb on - strand at 899.249 kb on - strand at 899.384 kb on + strand, within Psyr_0792 at 899.385 kb on - strand, within Psyr_0792 at 899.575 kb on + strand, within Psyr_0792 at 899.576 kb on - strand, within Psyr_0792 at 899.576 kb on - strand, within Psyr_0792 at 899.638 kb on - strand, within Psyr_0792 at 899.737 kb on - strand, within Psyr_0792 at 899.858 kb on + strand at 899.858 kb on + strand at 899.886 kb on + strand at 899.886 kb on + strand at 899.929 kb on + strand at 899.929 kb on + strand at 899.929 kb on + strand at 899.929 kb on + strand at 899.929 kb on + strand at 899.930 kb on - strand at 899.930 kb on - strand at 899.962 kb on + strand at 899.986 kb on - strand at 900.100 kb on + strand, within Psyr_0793 at 900.112 kb on + strand, within Psyr_0793 at 900.112 kb on + strand, within Psyr_0793 at 900.112 kb on + strand, within Psyr_0793 at 900.112 kb on + strand, within Psyr_0793 at 900.113 kb on - strand, within Psyr_0793
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Fusaric 250 ug/ml remove 897,909 + Psyr_0790 0.55 -0.1 898,035 + Psyr_0790 0.64 +1.1 898,035 + Psyr_0790 0.64 +1.1 898,305 + Psyr_0790 0.85 -1.0 898,305 + Psyr_0790 0.85 -0.3 898,305 + Psyr_0790 0.85 -1.2 898,305 + Psyr_0790 0.85 +0.1 898,306 - Psyr_0790 0.85 +0.7 898,306 - Psyr_0790 0.85 -0.2 898,306 - Psyr_0790 0.85 -0.5 898,306 - Psyr_0790 0.85 +1.1 898,306 - Psyr_0790 0.85 +0.6 898,306 - Psyr_0790 0.85 +0.3 898,323 + Psyr_0790 0.86 +2.8 898,324 - Psyr_0790 0.87 -0.4 898,324 - Psyr_0790 0.87 -1.1 898,372 + -0.2 898,372 + +2.8 898,373 - +0.2 898,373 - +0.2 898,480 + -0.1 898,486 + +0.2 898,486 + -0.3 898,487 - +0.1 898,487 - -0.8 898,487 - -0.8 898,487 - +0.9 898,505 + +0.5 898,506 - -0.8 898,565 + -0.9 898,565 + -0.9 898,584 - -2.5 898,655 + -0.8 898,656 - +0.2 898,656 - +0.8 898,704 + +2.2 898,805 + Psyr_0791 0.17 -0.8 898,806 - Psyr_0791 0.17 -1.0 899,248 + -0.4 899,248 + +1.7 899,248 + -0.5 899,248 + +0.2 899,249 - -1.7 899,249 - -0.5 899,384 + Psyr_0792 0.22 -0.6 899,385 - Psyr_0792 0.22 +1.0 899,575 + Psyr_0792 0.52 +0.6 899,576 - Psyr_0792 0.53 +0.1 899,576 - Psyr_0792 0.53 +0.1 899,638 - Psyr_0792 0.62 -0.9 899,737 - Psyr_0792 0.78 +1.0 899,858 + +1.1 899,858 + -1.3 899,886 + -0.7 899,886 + +0.8 899,929 + -0.8 899,929 + +0.8 899,929 + +0.2 899,929 + -0.0 899,929 + -0.2 899,930 - +1.2 899,930 - +0.1 899,962 + -0.6 899,986 - -3.4 900,100 + Psyr_0793 0.27 -2.5 900,112 + Psyr_0793 0.30 -0.7 900,112 + Psyr_0793 0.30 +1.7 900,112 + Psyr_0793 0.30 +0.6 900,112 + Psyr_0793 0.30 -0.9 900,113 - Psyr_0793 0.30 -1.0
Or see this region's nucleotide sequence