Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0737

Experiment: KB with Fusaric 250 ug/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_0735 and Psyr_0736 overlap by 14 nucleotidesPsyr_0736 and Psyr_0737 are separated by 213 nucleotidesPsyr_0737 and Psyr_0738 are separated by 794 nucleotides Psyr_0735: Psyr_0735 - Peptidase S24, S26A and S26B, at 840,487 to 840,921 _0735 Psyr_0736: Psyr_0736 - umuC protein, at 840,908 to 841,153 _0736 Psyr_0737: Psyr_0737 - putative transmembrane protein, at 841,367 to 841,780 _0737 Psyr_0738: Psyr_0738 - type III effector protein AvrRpm1, at 842,575 to 843,261 _0738 Position (kb) 841 842Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 840.452 kb on + strandat 840.452 kb on + strandat 840.452 kb on + strandat 840.452 kb on + strandat 840.452 kb on + strandat 840.454 kb on + strandat 840.829 kb on - strand, within Psyr_0735at 840.829 kb on - strand, within Psyr_0735at 840.829 kb on - strand, within Psyr_0735at 840.829 kb on - strand, within Psyr_0735at 840.892 kb on + strandat 840.938 kb on - strand, within Psyr_0736at 840.957 kb on - strand, within Psyr_0736at 840.957 kb on - strand, within Psyr_0736at 840.957 kb on - strand, within Psyr_0736at 840.957 kb on - strand, within Psyr_0736at 840.957 kb on - strand, within Psyr_0736at 840.957 kb on - strand, within Psyr_0736at 841.143 kb on - strandat 841.143 kb on - strandat 841.152 kb on - strandat 841.152 kb on - strandat 841.152 kb on - strandat 841.154 kb on + strandat 841.154 kb on + strandat 841.154 kb on + strandat 841.154 kb on + strandat 841.154 kb on + strandat 841.155 kb on - strandat 841.159 kb on + strandat 841.160 kb on - strandat 841.160 kb on - strandat 841.223 kb on + strandat 841.223 kb on + strandat 841.224 kb on - strandat 841.340 kb on - strandat 841.354 kb on + strandat 841.357 kb on + strandat 841.446 kb on - strand, within Psyr_0737at 841.446 kb on - strand, within Psyr_0737at 841.487 kb on - strand, within Psyr_0737at 841.487 kb on - strand, within Psyr_0737at 841.497 kb on + strand, within Psyr_0737at 841.519 kb on + strand, within Psyr_0737at 841.520 kb on - strand, within Psyr_0737at 841.545 kb on - strand, within Psyr_0737at 841.545 kb on - strand, within Psyr_0737at 841.571 kb on - strand, within Psyr_0737at 841.571 kb on - strand, within Psyr_0737at 841.571 kb on - strand, within Psyr_0737at 841.571 kb on - strand, within Psyr_0737at 841.574 kb on + strand, within Psyr_0737at 841.574 kb on + strand, within Psyr_0737at 841.575 kb on - strand, within Psyr_0737at 841.575 kb on - strand, within Psyr_0737at 841.640 kb on - strand, within Psyr_0737at 841.641 kb on + strand, within Psyr_0737at 841.641 kb on + strand, within Psyr_0737at 841.641 kb on + strand, within Psyr_0737at 841.642 kb on - strand, within Psyr_0737at 841.716 kb on + strand, within Psyr_0737at 841.784 kb on - strandat 841.880 kb on + strandat 841.881 kb on - strandat 841.885 kb on - strandat 841.895 kb on - strandat 841.965 kb on - strandat 842.014 kb on + strandat 842.024 kb on + strandat 842.024 kb on + strandat 842.144 kb on - strandat 842.189 kb on + strandat 842.207 kb on - strandat 842.207 kb on - strandat 842.212 kb on - strandat 842.212 kb on - strandat 842.212 kb on - strandat 842.212 kb on - strandat 842.236 kb on + strandat 842.236 kb on + strandat 842.236 kb on + strandat 842.315 kb on + strandat 842.372 kb on + strandat 842.372 kb on + strandat 842.373 kb on - strandat 842.378 kb on - strandat 842.378 kb on - strandat 842.403 kb on + strandat 842.403 kb on + strandat 842.404 kb on - strandat 842.440 kb on + strandat 842.474 kb on + strandat 842.474 kb on + strandat 842.475 kb on - strandat 842.475 kb on - strandat 842.493 kb on + strandat 842.494 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Fusaric 250 ug/ml
remove
840,452 + -0.1
840,452 + +1.2
840,452 + -0.8
840,452 + -0.3
840,452 + +0.5
840,454 + -0.1
840,829 - Psyr_0735 0.79 +0.8
840,829 - Psyr_0735 0.79 -0.8
840,829 - Psyr_0735 0.79 -1.9
840,829 - Psyr_0735 0.79 -0.0
840,892 + -1.1
840,938 - Psyr_0736 0.12 -2.1
840,957 - Psyr_0736 0.20 -0.2
840,957 - Psyr_0736 0.20 +1.0
840,957 - Psyr_0736 0.20 -1.5
840,957 - Psyr_0736 0.20 -0.4
840,957 - Psyr_0736 0.20 +0.3
840,957 - Psyr_0736 0.20 -0.9
841,143 - -0.2
841,143 - -0.6
841,152 - -0.8
841,152 - -0.2
841,152 - +0.2
841,154 + -1.4
841,154 + +1.1
841,154 + -3.1
841,154 + +0.3
841,154 + -0.8
841,155 - +0.6
841,159 + +0.5
841,160 - +0.7
841,160 - -0.2
841,223 + -0.1
841,223 + +0.8
841,224 - -0.1
841,340 - +0.2
841,354 + -0.8
841,357 + -0.9
841,446 - Psyr_0737 0.19 -0.6
841,446 - Psyr_0737 0.19 +0.8
841,487 - Psyr_0737 0.29 +0.7
841,487 - Psyr_0737 0.29 +1.6
841,497 + Psyr_0737 0.31 -2.1
841,519 + Psyr_0737 0.37 -3.0
841,520 - Psyr_0737 0.37 -0.8
841,545 - Psyr_0737 0.43 -0.6
841,545 - Psyr_0737 0.43 +0.1
841,571 - Psyr_0737 0.49 +0.5
841,571 - Psyr_0737 0.49 -1.3
841,571 - Psyr_0737 0.49 -2.0
841,571 - Psyr_0737 0.49 -0.3
841,574 + Psyr_0737 0.50 -0.6
841,574 + Psyr_0737 0.50 -0.1
841,575 - Psyr_0737 0.50 -0.4
841,575 - Psyr_0737 0.50 -0.3
841,640 - Psyr_0737 0.66 +0.9
841,641 + Psyr_0737 0.66 -2.5
841,641 + Psyr_0737 0.66 -0.8
841,641 + Psyr_0737 0.66 -1.9
841,642 - Psyr_0737 0.66 +0.5
841,716 + Psyr_0737 0.84 -0.4
841,784 - +1.2
841,880 + -1.2
841,881 - -0.6
841,885 - -0.0
841,895 - -0.3
841,965 - +0.8
842,014 + +0.3
842,024 + -0.2
842,024 + -1.1
842,144 - +1.5
842,189 + +1.0
842,207 - -0.5
842,207 - +1.8
842,212 - +0.3
842,212 - -1.6
842,212 - +0.3
842,212 - -1.2
842,236 + +1.1
842,236 + -2.6
842,236 + -0.8
842,315 + -0.1
842,372 + -0.3
842,372 + +0.4
842,373 - +0.7
842,378 - +0.6
842,378 - +0.5
842,403 + +0.8
842,403 + +0.0
842,404 - -1.5
842,440 + -0.4
842,474 + +0.4
842,474 + +0.2
842,475 - +1.0
842,475 - +0.6
842,493 + +1.4
842,494 - +0.8

Or see this region's nucleotide sequence