Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0668

Experiment: KB with Fusaric 250 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0667 and Psyr_0668 are separated by 264 nucleotidesPsyr_0668 and Psyr_0669 are separated by 111 nucleotides Psyr_0667: Psyr_0667 - Periplasmic binding protein, at 755,559 to 756,479 _0667 Psyr_0668: Psyr_0668 - Sodium/calcium exchanger membrane region, at 756,744 to 757,847 _0668 Psyr_0669: Psyr_0669 - Amidohydrolase, at 757,959 to 759,314 _0669 Position (kb) 756 757 758Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 755.881 kb on + strand, within Psyr_0667at 755.881 kb on + strand, within Psyr_0667at 755.882 kb on - strand, within Psyr_0667at 755.882 kb on - strand, within Psyr_0667at 755.882 kb on - strand, within Psyr_0667at 755.882 kb on - strand, within Psyr_0667at 756.067 kb on + strand, within Psyr_0667at 756.124 kb on + strand, within Psyr_0667at 756.124 kb on + strand, within Psyr_0667at 756.124 kb on + strand, within Psyr_0667at 756.124 kb on + strand, within Psyr_0667at 756.125 kb on - strand, within Psyr_0667at 756.125 kb on - strand, within Psyr_0667at 756.189 kb on + strand, within Psyr_0667at 756.189 kb on + strand, within Psyr_0667at 756.189 kb on + strand, within Psyr_0667at 756.189 kb on + strand, within Psyr_0667at 756.189 kb on + strand, within Psyr_0667at 756.189 kb on + strand, within Psyr_0667at 756.189 kb on + strand, within Psyr_0667at 756.189 kb on + strand, within Psyr_0667at 756.189 kb on + strand, within Psyr_0667at 756.189 kb on + strand, within Psyr_0667at 756.189 kb on + strand, within Psyr_0667at 756.189 kb on + strand, within Psyr_0667at 756.189 kb on + strand, within Psyr_0667at 756.189 kb on + strand, within Psyr_0667at 756.189 kb on + strand, within Psyr_0667at 756.190 kb on - strand, within Psyr_0667at 756.190 kb on - strand, within Psyr_0667at 756.190 kb on - strand, within Psyr_0667at 756.190 kb on - strand, within Psyr_0667at 756.190 kb on - strand, within Psyr_0667at 756.190 kb on - strand, within Psyr_0667at 756.190 kb on - strand, within Psyr_0667at 756.190 kb on - strand, within Psyr_0667at 756.190 kb on - strand, within Psyr_0667at 756.190 kb on - strand, within Psyr_0667at 756.190 kb on - strand, within Psyr_0667at 756.190 kb on - strand, within Psyr_0667at 756.190 kb on - strand, within Psyr_0667at 756.190 kb on - strand, within Psyr_0667at 756.191 kb on + strand, within Psyr_0667at 756.192 kb on - strand, within Psyr_0667at 756.213 kb on + strand, within Psyr_0667at 756.213 kb on + strand, within Psyr_0667at 756.214 kb on - strand, within Psyr_0667at 756.214 kb on - strand, within Psyr_0667at 756.214 kb on - strand, within Psyr_0667at 756.214 kb on - strand, within Psyr_0667at 756.495 kb on + strandat 756.496 kb on - strandat 756.496 kb on - strandat 756.614 kb on + strandat 756.647 kb on + strandat 756.706 kb on + strandat 756.706 kb on + strandat 756.706 kb on + strandat 756.706 kb on + strandat 756.706 kb on + strandat 756.706 kb on + strandat 756.706 kb on + strandat 756.706 kb on + strandat 756.706 kb on + strandat 756.706 kb on + strandat 756.706 kb on + strandat 756.706 kb on + strandat 756.706 kb on + strandat 756.706 kb on + strandat 756.706 kb on + strandat 756.707 kb on - strandat 756.707 kb on - strandat 756.707 kb on - strandat 756.707 kb on - strandat 756.707 kb on - strandat 757.053 kb on + strand, within Psyr_0668at 757.134 kb on + strand, within Psyr_0668at 757.134 kb on + strand, within Psyr_0668at 757.135 kb on - strand, within Psyr_0668at 757.135 kb on - strand, within Psyr_0668at 757.135 kb on - strand, within Psyr_0668at 757.135 kb on - strand, within Psyr_0668at 757.135 kb on - strand, within Psyr_0668at 757.158 kb on + strand, within Psyr_0668at 757.158 kb on + strand, within Psyr_0668at 757.158 kb on + strand, within Psyr_0668at 757.158 kb on + strand, within Psyr_0668at 757.158 kb on + strand, within Psyr_0668at 757.159 kb on - strand, within Psyr_0668at 757.159 kb on - strand, within Psyr_0668at 757.159 kb on - strand, within Psyr_0668at 757.201 kb on + strand, within Psyr_0668at 757.236 kb on + strand, within Psyr_0668at 757.236 kb on + strand, within Psyr_0668at 757.272 kb on + strand, within Psyr_0668at 757.273 kb on - strand, within Psyr_0668at 757.273 kb on - strand, within Psyr_0668at 757.273 kb on - strand, within Psyr_0668at 757.273 kb on - strand, within Psyr_0668at 757.273 kb on - strand, within Psyr_0668at 757.311 kb on + strand, within Psyr_0668at 757.311 kb on + strand, within Psyr_0668at 757.311 kb on + strand, within Psyr_0668at 757.323 kb on + strand, within Psyr_0668at 757.324 kb on - strand, within Psyr_0668at 757.324 kb on - strand, within Psyr_0668at 757.324 kb on - strand, within Psyr_0668at 757.674 kb on + strand, within Psyr_0668at 757.674 kb on + strand, within Psyr_0668at 757.675 kb on - strand, within Psyr_0668at 757.675 kb on - strand, within Psyr_0668at 757.675 kb on - strand, within Psyr_0668at 757.852 kb on + strandat 757.852 kb on + strandat 757.853 kb on - strandat 757.944 kb on + strandat 758.293 kb on + strand, within Psyr_0669at 758.293 kb on + strand, within Psyr_0669at 758.294 kb on - strand, within Psyr_0669at 758.294 kb on - strand, within Psyr_0669at 758.453 kb on + strand, within Psyr_0669at 758.535 kb on + strand, within Psyr_0669at 758.535 kb on + strand, within Psyr_0669at 758.535 kb on + strand, within Psyr_0669at 758.535 kb on + strand, within Psyr_0669at 758.535 kb on + strand, within Psyr_0669at 758.535 kb on + strand, within Psyr_0669at 758.535 kb on + strand, within Psyr_0669at 758.535 kb on + strand, within Psyr_0669at 758.536 kb on - strand, within Psyr_0669at 758.536 kb on - strand, within Psyr_0669at 758.536 kb on - strand, within Psyr_0669at 758.536 kb on - strand, within Psyr_0669at 758.548 kb on + strand, within Psyr_0669at 758.548 kb on + strand, within Psyr_0669at 758.548 kb on + strand, within Psyr_0669at 758.548 kb on + strand, within Psyr_0669at 758.549 kb on - strand, within Psyr_0669at 758.743 kb on + strand, within Psyr_0669at 758.744 kb on - strand, within Psyr_0669at 758.744 kb on - strand, within Psyr_0669at 758.744 kb on - strand, within Psyr_0669at 758.744 kb on - strand, within Psyr_0669at 758.744 kb on - strand, within Psyr_0669

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Fusaric 250 ug/ml
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755,881 + Psyr_0667 0.35 -1.9
755,881 + Psyr_0667 0.35 -2.6
755,882 - Psyr_0667 0.35 -0.5
755,882 - Psyr_0667 0.35 -1.2
755,882 - Psyr_0667 0.35 +1.0
755,882 - Psyr_0667 0.35 -0.7
756,067 + Psyr_0667 0.55 -2.6
756,124 + Psyr_0667 0.61 -1.5
756,124 + Psyr_0667 0.61 -1.5
756,124 + Psyr_0667 0.61 -1.5
756,124 + Psyr_0667 0.61 +1.1
756,125 - Psyr_0667 0.61 +1.0
756,125 - Psyr_0667 0.61 -0.4
756,189 + Psyr_0667 0.68 -1.0
756,189 + Psyr_0667 0.68 +0.6
756,189 + Psyr_0667 0.68 -2.8
756,189 + Psyr_0667 0.68 +0.8
756,189 + Psyr_0667 0.68 -2.2
756,189 + Psyr_0667 0.68 -0.2
756,189 + Psyr_0667 0.68 +0.1
756,189 + Psyr_0667 0.68 -0.2
756,189 + Psyr_0667 0.68 +2.1
756,189 + Psyr_0667 0.68 -0.9
756,189 + Psyr_0667 0.68 -4.2
756,189 + Psyr_0667 0.68 +0.1
756,189 + Psyr_0667 0.68 +1.5
756,189 + Psyr_0667 0.68 +1.0
756,189 + Psyr_0667 0.68 -0.6
756,190 - Psyr_0667 0.69 +0.8
756,190 - Psyr_0667 0.69 -0.3
756,190 - Psyr_0667 0.69 -1.1
756,190 - Psyr_0667 0.69 -1.0
756,190 - Psyr_0667 0.69 -0.4
756,190 - Psyr_0667 0.69 -0.5
756,190 - Psyr_0667 0.69 +0.4
756,190 - Psyr_0667 0.69 -0.4
756,190 - Psyr_0667 0.69 -0.5
756,190 - Psyr_0667 0.69 +1.7
756,190 - Psyr_0667 0.69 +1.1
756,190 - Psyr_0667 0.69 +0.4
756,190 - Psyr_0667 0.69 -0.3
756,190 - Psyr_0667 0.69 -0.8
756,191 + Psyr_0667 0.69 -1.8
756,192 - Psyr_0667 0.69 +1.7
756,213 + Psyr_0667 0.71 -0.4
756,213 + Psyr_0667 0.71 -0.7
756,214 - Psyr_0667 0.71 -0.7
756,214 - Psyr_0667 0.71 -0.3
756,214 - Psyr_0667 0.71 +0.2
756,214 - Psyr_0667 0.71 +0.6
756,495 + -0.3
756,496 - +0.4
756,496 - +0.0
756,614 + -1.2
756,647 + +0.1
756,706 + -0.5
756,706 + +1.9
756,706 + +0.7
756,706 + -0.4
756,706 + +2.1
756,706 + -0.1
756,706 + +2.8
756,706 + -0.5
756,706 + -1.2
756,706 + +0.7
756,706 + +1.2
756,706 + -0.6
756,706 + +0.8
756,706 + -1.3
756,706 + +1.2
756,707 - +0.8
756,707 - +0.8
756,707 - +0.7
756,707 - +0.2
756,707 - +0.1
757,053 + Psyr_0668 0.28 -1.0
757,134 + Psyr_0668 0.35 +1.4
757,134 + Psyr_0668 0.35 -1.1
757,135 - Psyr_0668 0.35 -0.3
757,135 - Psyr_0668 0.35 +0.1
757,135 - Psyr_0668 0.35 -0.7
757,135 - Psyr_0668 0.35 -0.6
757,135 - Psyr_0668 0.35 -0.2
757,158 + Psyr_0668 0.38 -0.1
757,158 + Psyr_0668 0.38 +0.6
757,158 + Psyr_0668 0.38 +0.8
757,158 + Psyr_0668 0.38 -0.0
757,158 + Psyr_0668 0.38 -0.4
757,159 - Psyr_0668 0.38 -0.4
757,159 - Psyr_0668 0.38 +0.3
757,159 - Psyr_0668 0.38 -0.7
757,201 + Psyr_0668 0.41 -0.5
757,236 + Psyr_0668 0.45 -0.9
757,236 + Psyr_0668 0.45 -0.9
757,272 + Psyr_0668 0.48 +0.2
757,273 - Psyr_0668 0.48 -0.9
757,273 - Psyr_0668 0.48 +1.3
757,273 - Psyr_0668 0.48 -0.7
757,273 - Psyr_0668 0.48 -0.3
757,273 - Psyr_0668 0.48 +0.2
757,311 + Psyr_0668 0.51 -0.7
757,311 + Psyr_0668 0.51 -1.7
757,311 + Psyr_0668 0.51 -0.3
757,323 + Psyr_0668 0.52 +0.1
757,324 - Psyr_0668 0.53 +0.8
757,324 - Psyr_0668 0.53 -0.2
757,324 - Psyr_0668 0.53 -1.5
757,674 + Psyr_0668 0.84 -2.3
757,674 + Psyr_0668 0.84 +2.3
757,675 - Psyr_0668 0.84 -1.2
757,675 - Psyr_0668 0.84 +0.7
757,675 - Psyr_0668 0.84 -0.2
757,852 + +1.6
757,852 + +0.7
757,853 - -1.0
757,944 + +0.5
758,293 + Psyr_0669 0.25 -0.4
758,293 + Psyr_0669 0.25 +0.7
758,294 - Psyr_0669 0.25 -0.2
758,294 - Psyr_0669 0.25 +1.0
758,453 + Psyr_0669 0.36 -2.6
758,535 + Psyr_0669 0.42 -0.4
758,535 + Psyr_0669 0.42 +1.9
758,535 + Psyr_0669 0.42 +0.7
758,535 + Psyr_0669 0.42 -0.3
758,535 + Psyr_0669 0.42 +1.2
758,535 + Psyr_0669 0.42 -2.2
758,535 + Psyr_0669 0.42 +1.2
758,535 + Psyr_0669 0.42 +0.1
758,536 - Psyr_0669 0.43 -0.8
758,536 - Psyr_0669 0.43 -1.1
758,536 - Psyr_0669 0.43 +1.4
758,536 - Psyr_0669 0.43 +0.7
758,548 + Psyr_0669 0.43 -1.4
758,548 + Psyr_0669 0.43 -1.3
758,548 + Psyr_0669 0.43 -1.9
758,548 + Psyr_0669 0.43 +0.2
758,549 - Psyr_0669 0.44 +1.0
758,743 + Psyr_0669 0.58 -0.1
758,744 - Psyr_0669 0.58 -0.1
758,744 - Psyr_0669 0.58 -1.2
758,744 - Psyr_0669 0.58 -1.3
758,744 - Psyr_0669 0.58 -0.8
758,744 - Psyr_0669 0.58 +0.7

Or see this region's nucleotide sequence