Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0505

Experiment: KB with Fusaric 250 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0504 and Psyr_0505 are separated by 22 nucleotidesPsyr_0505 and Psyr_0506 are separated by 270 nucleotides Psyr_0504: Psyr_0504 - conserved domain protein, at 552,941 to 555,589 _0504 Psyr_0505: Psyr_0505 - Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region, at 555,612 to 557,414 _0505 Psyr_0506: Psyr_0506 - L-proline dehydrogenase / delta-1-pyrroline-5-carboxylate dehydrogenase, at 557,685 to 561,587 _0506 Position (kb) 555 556 557 558Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 554.626 kb on + strand, within Psyr_0504at 554.626 kb on + strand, within Psyr_0504at 554.626 kb on + strand, within Psyr_0504at 554.627 kb on - strand, within Psyr_0504at 554.688 kb on + strand, within Psyr_0504at 554.689 kb on - strand, within Psyr_0504at 554.689 kb on - strand, within Psyr_0504at 554.689 kb on - strand, within Psyr_0504at 554.689 kb on - strand, within Psyr_0504at 554.689 kb on - strand, within Psyr_0504at 554.689 kb on - strand, within Psyr_0504at 554.712 kb on - strand, within Psyr_0504at 554.847 kb on + strand, within Psyr_0504at 554.847 kb on + strand, within Psyr_0504at 554.847 kb on + strand, within Psyr_0504at 554.848 kb on - strand, within Psyr_0504at 554.848 kb on - strand, within Psyr_0504at 554.848 kb on - strand, within Psyr_0504at 554.849 kb on + strand, within Psyr_0504at 554.849 kb on + strand, within Psyr_0504at 554.849 kb on + strand, within Psyr_0504at 554.849 kb on + strand, within Psyr_0504at 554.849 kb on + strand, within Psyr_0504at 554.849 kb on + strand, within Psyr_0504at 554.849 kb on + strand, within Psyr_0504at 554.850 kb on - strand, within Psyr_0504at 554.850 kb on - strand, within Psyr_0504at 554.850 kb on - strand, within Psyr_0504at 554.850 kb on - strand, within Psyr_0504at 554.850 kb on - strand, within Psyr_0504at 554.850 kb on - strand, within Psyr_0504at 554.850 kb on - strand, within Psyr_0504at 554.904 kb on - strand, within Psyr_0504at 554.904 kb on - strand, within Psyr_0504at 554.907 kb on - strand, within Psyr_0504at 554.907 kb on - strand, within Psyr_0504at 554.927 kb on + strand, within Psyr_0504at 554.927 kb on + strand, within Psyr_0504at 554.927 kb on + strand, within Psyr_0504at 554.927 kb on + strand, within Psyr_0504at 554.927 kb on + strand, within Psyr_0504at 554.927 kb on + strand, within Psyr_0504at 554.927 kb on + strand, within Psyr_0504at 554.927 kb on + strand, within Psyr_0504at 554.928 kb on - strand, within Psyr_0504at 554.928 kb on - strand, within Psyr_0504at 554.928 kb on - strand, within Psyr_0504at 554.928 kb on - strand, within Psyr_0504at 554.928 kb on - strand, within Psyr_0504at 554.928 kb on - strand, within Psyr_0504at 555.038 kb on + strand, within Psyr_0504at 555.059 kb on + strand, within Psyr_0504at 555.060 kb on - strand, within Psyr_0504at 555.060 kb on - strand, within Psyr_0504at 555.173 kb on + strand, within Psyr_0504at 555.174 kb on - strand, within Psyr_0504at 555.174 kb on - strand, within Psyr_0504at 555.174 kb on - strand, within Psyr_0504at 555.174 kb on - strand, within Psyr_0504at 555.359 kb on + strandat 555.360 kb on - strandat 555.360 kb on - strandat 555.360 kb on - strandat 555.402 kb on - strandat 555.462 kb on - strandat 555.501 kb on - strandat 555.508 kb on + strandat 555.509 kb on - strandat 555.509 kb on - strandat 555.736 kb on + strandat 555.736 kb on + strandat 555.737 kb on - strandat 555.737 kb on - strandat 555.841 kb on + strand, within Psyr_0505at 555.841 kb on + strand, within Psyr_0505at 555.842 kb on - strand, within Psyr_0505at 555.842 kb on - strand, within Psyr_0505at 556.120 kb on + strand, within Psyr_0505at 556.120 kb on + strand, within Psyr_0505at 556.121 kb on - strand, within Psyr_0505at 556.123 kb on + strand, within Psyr_0505at 556.124 kb on - strand, within Psyr_0505at 556.151 kb on - strand, within Psyr_0505at 556.315 kb on + strand, within Psyr_0505at 556.315 kb on + strand, within Psyr_0505at 556.315 kb on + strand, within Psyr_0505at 556.315 kb on + strand, within Psyr_0505at 556.316 kb on - strand, within Psyr_0505at 556.341 kb on + strand, within Psyr_0505at 556.341 kb on + strand, within Psyr_0505at 556.341 kb on + strand, within Psyr_0505at 556.342 kb on - strand, within Psyr_0505at 556.342 kb on - strand, within Psyr_0505at 556.342 kb on - strand, within Psyr_0505at 556.345 kb on + strand, within Psyr_0505at 556.345 kb on + strand, within Psyr_0505at 556.346 kb on - strand, within Psyr_0505at 556.346 kb on - strand, within Psyr_0505at 556.346 kb on - strand, within Psyr_0505at 556.346 kb on - strand, within Psyr_0505at 556.459 kb on + strand, within Psyr_0505at 556.459 kb on + strand, within Psyr_0505at 556.486 kb on + strand, within Psyr_0505at 556.487 kb on - strand, within Psyr_0505at 556.549 kb on + strand, within Psyr_0505at 556.550 kb on - strand, within Psyr_0505at 556.550 kb on - strand, within Psyr_0505at 556.632 kb on - strand, within Psyr_0505at 556.830 kb on + strand, within Psyr_0505at 556.830 kb on + strand, within Psyr_0505at 556.831 kb on - strand, within Psyr_0505at 556.831 kb on - strand, within Psyr_0505at 556.852 kb on + strand, within Psyr_0505at 556.856 kb on + strand, within Psyr_0505at 556.856 kb on + strand, within Psyr_0505at 556.856 kb on + strand, within Psyr_0505at 556.856 kb on + strand, within Psyr_0505at 556.856 kb on + strand, within Psyr_0505at 556.857 kb on - strand, within Psyr_0505at 556.857 kb on - strand, within Psyr_0505at 556.857 kb on - strand, within Psyr_0505at 556.863 kb on - strand, within Psyr_0505at 557.099 kb on + strand, within Psyr_0505at 557.100 kb on - strand, within Psyr_0505at 557.100 kb on - strand, within Psyr_0505at 557.100 kb on - strand, within Psyr_0505at 557.100 kb on - strand, within Psyr_0505at 557.260 kb on + strandat 557.261 kb on - strandat 557.261 kb on - strandat 557.368 kb on + strandat 557.368 kb on + strandat 557.368 kb on + strandat 557.368 kb on + strandat 557.368 kb on + strandat 557.368 kb on + strandat 557.369 kb on - strandat 557.369 kb on - strandat 557.448 kb on + strandat 557.448 kb on + strandat 557.448 kb on + strandat 557.573 kb on - strandat 557.853 kb on + strandat 557.853 kb on + strandat 557.853 kb on + strandat 557.853 kb on + strandat 557.854 kb on - strandat 557.854 kb on - strandat 557.854 kb on - strandat 557.854 kb on - strandat 557.854 kb on - strandat 557.919 kb on + strandat 557.920 kb on - strandat 557.920 kb on - strandat 558.069 kb on + strandat 558.069 kb on + strandat 558.069 kb on + strandat 558.069 kb on + strandat 558.070 kb on - strandat 558.070 kb on - strandat 558.070 kb on - strandat 558.070 kb on - strandat 558.070 kb on - strandat 558.094 kb on + strand, within Psyr_0506at 558.095 kb on - strand, within Psyr_0506at 558.095 kb on - strand, within Psyr_0506at 558.334 kb on + strand, within Psyr_0506at 558.340 kb on + strand, within Psyr_0506at 558.341 kb on - strand, within Psyr_0506at 558.341 kb on - strand, within Psyr_0506

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Fusaric 250 ug/ml
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554,626 + Psyr_0504 0.64 +0.6
554,626 + Psyr_0504 0.64 +0.5
554,626 + Psyr_0504 0.64 -1.4
554,627 - Psyr_0504 0.64 +0.0
554,688 + Psyr_0504 0.66 -0.1
554,689 - Psyr_0504 0.66 -0.1
554,689 - Psyr_0504 0.66 +0.6
554,689 - Psyr_0504 0.66 -1.6
554,689 - Psyr_0504 0.66 +2.3
554,689 - Psyr_0504 0.66 +1.7
554,689 - Psyr_0504 0.66 +1.6
554,712 - Psyr_0504 0.67 -0.8
554,847 + Psyr_0504 0.72 -1.0
554,847 + Psyr_0504 0.72 -0.3
554,847 + Psyr_0504 0.72 -0.5
554,848 - Psyr_0504 0.72 -0.3
554,848 - Psyr_0504 0.72 -1.2
554,848 - Psyr_0504 0.72 +0.4
554,849 + Psyr_0504 0.72 +0.9
554,849 + Psyr_0504 0.72 +0.7
554,849 + Psyr_0504 0.72 -1.2
554,849 + Psyr_0504 0.72 -1.5
554,849 + Psyr_0504 0.72 +1.8
554,849 + Psyr_0504 0.72 -0.1
554,849 + Psyr_0504 0.72 -0.2
554,850 - Psyr_0504 0.72 -0.2
554,850 - Psyr_0504 0.72 -0.2
554,850 - Psyr_0504 0.72 +1.0
554,850 - Psyr_0504 0.72 -1.2
554,850 - Psyr_0504 0.72 +1.4
554,850 - Psyr_0504 0.72 +0.5
554,850 - Psyr_0504 0.72 -1.3
554,904 - Psyr_0504 0.74 -1.0
554,904 - Psyr_0504 0.74 -1.3
554,907 - Psyr_0504 0.74 +0.1
554,907 - Psyr_0504 0.74 -0.4
554,927 + Psyr_0504 0.75 +0.3
554,927 + Psyr_0504 0.75 +1.2
554,927 + Psyr_0504 0.75 -0.3
554,927 + Psyr_0504 0.75 -1.3
554,927 + Psyr_0504 0.75 -2.3
554,927 + Psyr_0504 0.75 -2.0
554,927 + Psyr_0504 0.75 -0.2
554,927 + Psyr_0504 0.75 -0.0
554,928 - Psyr_0504 0.75 +4.3
554,928 - Psyr_0504 0.75 +1.2
554,928 - Psyr_0504 0.75 +0.7
554,928 - Psyr_0504 0.75 +0.1
554,928 - Psyr_0504 0.75 -1.7
554,928 - Psyr_0504 0.75 +0.1
555,038 + Psyr_0504 0.79 -0.5
555,059 + Psyr_0504 0.80 +0.2
555,060 - Psyr_0504 0.80 +0.9
555,060 - Psyr_0504 0.80 +0.2
555,173 + Psyr_0504 0.84 -0.6
555,174 - Psyr_0504 0.84 -0.4
555,174 - Psyr_0504 0.84 +0.1
555,174 - Psyr_0504 0.84 -0.4
555,174 - Psyr_0504 0.84 -0.3
555,359 + +1.0
555,360 - +1.1
555,360 - +1.4
555,360 - +0.3
555,402 - +1.3
555,462 - -0.9
555,501 - -2.9
555,508 + +0.3
555,509 - +2.1
555,509 - -1.6
555,736 + -2.0
555,736 + -1.3
555,737 - -0.2
555,737 - +0.2
555,841 + Psyr_0505 0.13 +0.7
555,841 + Psyr_0505 0.13 +0.2
555,842 - Psyr_0505 0.13 +0.4
555,842 - Psyr_0505 0.13 -2.6
556,120 + Psyr_0505 0.28 +1.6
556,120 + Psyr_0505 0.28 +0.4
556,121 - Psyr_0505 0.28 +1.4
556,123 + Psyr_0505 0.28 -0.1
556,124 - Psyr_0505 0.28 +0.1
556,151 - Psyr_0505 0.30 +0.2
556,315 + Psyr_0505 0.39 +0.8
556,315 + Psyr_0505 0.39 -0.4
556,315 + Psyr_0505 0.39 -0.0
556,315 + Psyr_0505 0.39 -1.8
556,316 - Psyr_0505 0.39 +0.3
556,341 + Psyr_0505 0.40 -0.2
556,341 + Psyr_0505 0.40 -3.9
556,341 + Psyr_0505 0.40 +0.4
556,342 - Psyr_0505 0.40 -0.4
556,342 - Psyr_0505 0.40 +0.6
556,342 - Psyr_0505 0.40 -0.3
556,345 + Psyr_0505 0.41 -0.4
556,345 + Psyr_0505 0.41 -0.5
556,346 - Psyr_0505 0.41 -0.9
556,346 - Psyr_0505 0.41 -0.7
556,346 - Psyr_0505 0.41 -1.8
556,346 - Psyr_0505 0.41 +0.5
556,459 + Psyr_0505 0.47 +0.5
556,459 + Psyr_0505 0.47 -0.6
556,486 + Psyr_0505 0.48 +0.2
556,487 - Psyr_0505 0.49 -0.2
556,549 + Psyr_0505 0.52 -0.1
556,550 - Psyr_0505 0.52 +0.8
556,550 - Psyr_0505 0.52 +1.8
556,632 - Psyr_0505 0.57 -0.0
556,830 + Psyr_0505 0.68 +0.4
556,830 + Psyr_0505 0.68 -3.3
556,831 - Psyr_0505 0.68 -1.2
556,831 - Psyr_0505 0.68 +0.2
556,852 + Psyr_0505 0.69 -0.8
556,856 + Psyr_0505 0.69 -0.0
556,856 + Psyr_0505 0.69 -1.2
556,856 + Psyr_0505 0.69 +0.2
556,856 + Psyr_0505 0.69 +0.8
556,856 + Psyr_0505 0.69 +0.1
556,857 - Psyr_0505 0.69 -0.9
556,857 - Psyr_0505 0.69 -0.5
556,857 - Psyr_0505 0.69 +0.1
556,863 - Psyr_0505 0.69 +0.3
557,099 + Psyr_0505 0.82 +1.3
557,100 - Psyr_0505 0.83 +0.3
557,100 - Psyr_0505 0.83 -0.3
557,100 - Psyr_0505 0.83 -0.3
557,100 - Psyr_0505 0.83 -0.8
557,260 + -0.8
557,261 - +2.6
557,261 - -0.8
557,368 + +0.4
557,368 + +2.6
557,368 + -0.7
557,368 + -0.2
557,368 + +0.0
557,368 + +0.3
557,369 - +0.6
557,369 - +1.2
557,448 + -0.5
557,448 + -0.5
557,448 + +0.8
557,573 - +0.2
557,853 + +2.5
557,853 + -1.1
557,853 + -3.0
557,853 + -3.3
557,854 - +0.8
557,854 - +0.2
557,854 - +0.5
557,854 - +0.7
557,854 - +1.0
557,919 + -0.1
557,920 - +0.8
557,920 - -1.8
558,069 + +0.3
558,069 + -1.0
558,069 + -0.8
558,069 + -1.5
558,070 - -0.3
558,070 - -0.3
558,070 - -0.8
558,070 - +0.4
558,070 - -0.6
558,094 + Psyr_0506 0.10 -3.3
558,095 - Psyr_0506 0.11 +0.6
558,095 - Psyr_0506 0.11 -0.3
558,334 + Psyr_0506 0.17 -1.7
558,340 + Psyr_0506 0.17 -0.3
558,341 - Psyr_0506 0.17 +2.4
558,341 - Psyr_0506 0.17 -0.5

Or see this region's nucleotide sequence