Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0415

Experiment: KB with Fusaric 250 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0414 and Psyr_0415 are separated by 60 nucleotidesPsyr_0415 and Psyr_0416 are separated by 3 nucleotidesPsyr_0416 and Psyr_0417 are separated by 0 nucleotides Psyr_0414: Psyr_0414 - uroporphyrinogen decarboxylase, at 451,965 to 453,029 _0414 Psyr_0415: Psyr_0415 - N-acyl-D-amino-acid deacylase, at 453,090 to 454,565 _0415 Psyr_0416: Psyr_0416 - transcriptional regulator, RpiR family, at 454,569 to 455,429 _0416 Psyr_0417: Psyr_0417 - gluconate permease GntT, at 455,430 to 456,779 _0417 Position (kb) 453 454 455Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 453.019 kb on - strandat 453.027 kb on + strandat 453.027 kb on + strandat 453.028 kb on - strandat 453.028 kb on - strandat 453.028 kb on - strandat 453.028 kb on - strandat 453.028 kb on - strandat 453.028 kb on - strandat 453.091 kb on + strandat 453.092 kb on - strandat 453.092 kb on - strandat 453.092 kb on - strandat 453.092 kb on - strandat 453.188 kb on - strandat 453.317 kb on + strand, within Psyr_0415at 453.380 kb on + strand, within Psyr_0415at 453.544 kb on + strand, within Psyr_0415at 453.548 kb on - strand, within Psyr_0415at 453.588 kb on + strand, within Psyr_0415at 453.653 kb on + strand, within Psyr_0415at 453.653 kb on + strand, within Psyr_0415at 453.654 kb on - strand, within Psyr_0415at 453.725 kb on - strand, within Psyr_0415at 453.731 kb on - strand, within Psyr_0415at 453.864 kb on + strand, within Psyr_0415at 453.864 kb on + strand, within Psyr_0415at 453.864 kb on + strand, within Psyr_0415at 453.865 kb on - strand, within Psyr_0415at 453.928 kb on + strand, within Psyr_0415at 453.928 kb on + strand, within Psyr_0415at 453.928 kb on + strand, within Psyr_0415at 453.929 kb on - strand, within Psyr_0415at 453.929 kb on - strand, within Psyr_0415at 453.929 kb on - strand, within Psyr_0415at 453.929 kb on - strand, within Psyr_0415at 454.003 kb on + strand, within Psyr_0415at 454.210 kb on + strand, within Psyr_0415at 454.210 kb on + strand, within Psyr_0415at 454.210 kb on + strand, within Psyr_0415at 454.210 kb on + strand, within Psyr_0415at 454.558 kb on + strandat 454.558 kb on + strandat 454.559 kb on - strandat 454.606 kb on + strandat 454.606 kb on + strandat 454.607 kb on - strandat 454.607 kb on - strandat 454.731 kb on - strand, within Psyr_0416at 454.731 kb on - strand, within Psyr_0416at 454.732 kb on + strand, within Psyr_0416at 454.732 kb on + strand, within Psyr_0416at 454.732 kb on + strand, within Psyr_0416at 454.732 kb on + strand, within Psyr_0416at 454.732 kb on + strand, within Psyr_0416at 454.732 kb on + strand, within Psyr_0416at 454.732 kb on + strand, within Psyr_0416at 454.732 kb on + strand, within Psyr_0416at 454.732 kb on + strand, within Psyr_0416at 454.732 kb on + strand, within Psyr_0416at 454.732 kb on + strand, within Psyr_0416at 454.733 kb on - strand, within Psyr_0416at 454.733 kb on - strand, within Psyr_0416at 454.733 kb on - strand, within Psyr_0416at 454.733 kb on - strand, within Psyr_0416at 454.733 kb on - strand, within Psyr_0416at 454.733 kb on - strand, within Psyr_0416at 454.733 kb on - strand, within Psyr_0416at 454.733 kb on - strand, within Psyr_0416at 454.733 kb on - strand, within Psyr_0416at 454.831 kb on + strand, within Psyr_0416at 454.832 kb on - strand, within Psyr_0416at 454.832 kb on - strand, within Psyr_0416at 455.409 kb on + strandat 455.409 kb on + strandat 455.409 kb on + strandat 455.409 kb on + strandat 455.409 kb on + strandat 455.409 kb on + strandat 455.409 kb on + strandat 455.409 kb on + strandat 455.409 kb on + strandat 455.410 kb on - strandat 455.410 kb on - strandat 455.410 kb on - strandat 455.536 kb on + strandat 455.536 kb on + strandat 455.537 kb on - strandat 455.537 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Fusaric 250 ug/ml
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453,019 - -0.2
453,027 + -0.4
453,027 + -0.3
453,028 - -1.5
453,028 - -1.1
453,028 - +0.2
453,028 - -0.1
453,028 - +0.3
453,028 - -1.2
453,091 + +0.4
453,092 - -0.7
453,092 - +0.3
453,092 - +0.3
453,092 - +0.3
453,188 - +0.8
453,317 + Psyr_0415 0.15 +1.0
453,380 + Psyr_0415 0.20 +0.8
453,544 + Psyr_0415 0.31 +0.0
453,548 - Psyr_0415 0.31 +1.0
453,588 + Psyr_0415 0.34 -1.2
453,653 + Psyr_0415 0.38 -0.6
453,653 + Psyr_0415 0.38 +0.8
453,654 - Psyr_0415 0.38 +1.0
453,725 - Psyr_0415 0.43 +0.5
453,731 - Psyr_0415 0.43 +1.0
453,864 + Psyr_0415 0.52 -0.7
453,864 + Psyr_0415 0.52 +2.7
453,864 + Psyr_0415 0.52 -0.3
453,865 - Psyr_0415 0.53 -3.4
453,928 + Psyr_0415 0.57 +0.8
453,928 + Psyr_0415 0.57 -1.0
453,928 + Psyr_0415 0.57 +1.1
453,929 - Psyr_0415 0.57 -0.2
453,929 - Psyr_0415 0.57 -0.3
453,929 - Psyr_0415 0.57 -0.5
453,929 - Psyr_0415 0.57 +1.6
454,003 + Psyr_0415 0.62 -2.5
454,210 + Psyr_0415 0.76 +1.6
454,210 + Psyr_0415 0.76 -0.1
454,210 + Psyr_0415 0.76 -0.5
454,210 + Psyr_0415 0.76 +0.0
454,558 + +0.0
454,558 + -0.1
454,559 - +1.5
454,606 + -0.2
454,606 + -0.2
454,607 - -0.4
454,607 - +0.7
454,731 - Psyr_0416 0.19 +0.3
454,731 - Psyr_0416 0.19 +1.8
454,732 + Psyr_0416 0.19 +1.6
454,732 + Psyr_0416 0.19 +0.3
454,732 + Psyr_0416 0.19 +0.8
454,732 + Psyr_0416 0.19 +0.2
454,732 + Psyr_0416 0.19 +0.6
454,732 + Psyr_0416 0.19 +0.4
454,732 + Psyr_0416 0.19 +0.6
454,732 + Psyr_0416 0.19 +0.2
454,732 + Psyr_0416 0.19 +0.5
454,732 + Psyr_0416 0.19 -0.0
454,732 + Psyr_0416 0.19 +2.8
454,733 - Psyr_0416 0.19 -0.4
454,733 - Psyr_0416 0.19 +1.0
454,733 - Psyr_0416 0.19 +1.0
454,733 - Psyr_0416 0.19 -0.5
454,733 - Psyr_0416 0.19 -0.3
454,733 - Psyr_0416 0.19 -0.0
454,733 - Psyr_0416 0.19 +1.4
454,733 - Psyr_0416 0.19 -2.7
454,733 - Psyr_0416 0.19 +0.2
454,831 + Psyr_0416 0.30 +0.7
454,832 - Psyr_0416 0.31 -0.3
454,832 - Psyr_0416 0.31 +1.4
455,409 + +0.1
455,409 + +0.1
455,409 + +1.6
455,409 + +0.0
455,409 + +0.1
455,409 + -0.3
455,409 + +0.5
455,409 + -0.0
455,409 + +0.2
455,410 - +0.9
455,410 - -0.3
455,410 - +1.2
455,536 + -0.3
455,536 + -0.5
455,537 - -1.4
455,537 - -1.3

Or see this region's nucleotide sequence