Experiment: KB with Fusaric 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0398 and Psyr_0399 are separated by 169 nucleotides Psyr_0399 and Psyr_0400 are separated by 13 nucleotides Psyr_0400 and Psyr_0401 are separated by 181 nucleotides
Psyr_0398: Psyr_0398 - replication restart DNA helicase PriA, at 425,511 to 427,730
_0398
Psyr_0399: Psyr_0399 - LSU ribosomal protein L31P, at 427,900 to 428,121
_0399
Psyr_0400: Psyr_0400 - nuclease (SNase-like), at 428,135 to 428,938
_0400
Psyr_0401: Psyr_0401 - Malate dehydrogenase (oxaloacetate decarboxylating) (NADP+), at 429,120 to 430,388
_0401
Position (kb) 427
428
429 Strain fitness (log2 ratio) -2
-1
0
1
2 at 427.751 kb on + strand at 427.752 kb on - strand at 427.752 kb on - strand at 427.752 kb on - strand at 427.776 kb on - strand at 427.825 kb on - strand at 427.861 kb on + strand at 427.861 kb on + strand at 427.862 kb on - strand at 427.862 kb on - strand at 427.896 kb on - strand at 428.030 kb on - strand, within Psyr_0399 at 428.119 kb on + strand at 428.119 kb on + strand at 428.120 kb on - strand at 428.120 kb on - strand at 428.120 kb on - strand at 428.283 kb on + strand, within Psyr_0400 at 428.326 kb on + strand, within Psyr_0400 at 428.327 kb on - strand, within Psyr_0400 at 428.459 kb on + strand, within Psyr_0400 at 428.483 kb on + strand, within Psyr_0400 at 428.483 kb on + strand, within Psyr_0400 at 428.484 kb on - strand, within Psyr_0400 at 428.484 kb on - strand, within Psyr_0400 at 428.484 kb on - strand, within Psyr_0400 at 428.537 kb on + strand, within Psyr_0400 at 428.537 kb on + strand, within Psyr_0400 at 428.936 kb on + strand at 428.987 kb on + strand at 428.999 kb on - strand at 428.999 kb on - strand at 429.003 kb on + strand at 429.003 kb on + strand at 429.003 kb on + strand at 429.004 kb on - strand at 429.004 kb on - strand at 429.010 kb on + strand at 429.010 kb on + strand at 429.010 kb on + strand at 429.011 kb on - strand at 429.022 kb on + strand at 429.023 kb on - strand at 429.051 kb on + strand at 429.051 kb on + strand at 429.057 kb on + strand at 429.057 kb on + strand at 429.057 kb on + strand at 429.057 kb on + strand at 429.057 kb on + strand at 429.058 kb on - strand at 429.058 kb on - strand at 429.058 kb on - strand at 429.058 kb on - strand at 429.070 kb on + strand at 429.098 kb on + strand at 429.117 kb on + strand at 429.117 kb on + strand at 429.117 kb on + strand at 429.117 kb on + strand at 429.118 kb on - strand at 429.118 kb on - strand at 429.118 kb on - strand at 429.118 kb on - strand at 429.118 kb on - strand at 429.118 kb on - strand at 429.118 kb on - strand at 429.118 kb on - strand at 429.118 kb on - strand at 429.118 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Fusaric 250 ug/ml remove 427,751 + +1.3 427,752 - -2.3 427,752 - -0.3 427,752 - -1.9 427,776 - -1.2 427,825 - -2.5 427,861 + +1.4 427,861 + -2.0 427,862 - -2.5 427,862 - -2.7 427,896 - -0.7 428,030 - Psyr_0399 0.59 +1.3 428,119 + +1.1 428,119 + -2.1 428,120 - -0.5 428,120 - -1.0 428,120 - -0.7 428,283 + Psyr_0400 0.18 +1.9 428,326 + Psyr_0400 0.24 -0.0 428,327 - Psyr_0400 0.24 -0.1 428,459 + Psyr_0400 0.40 +1.3 428,483 + Psyr_0400 0.43 +0.9 428,483 + Psyr_0400 0.43 +1.0 428,484 - Psyr_0400 0.43 -0.7 428,484 - Psyr_0400 0.43 -0.2 428,484 - Psyr_0400 0.43 -0.8 428,537 + Psyr_0400 0.50 +0.2 428,537 + Psyr_0400 0.50 +0.1 428,936 + +1.0 428,987 + -0.2 428,999 - +0.4 428,999 - -2.2 429,003 + +2.4 429,003 + +0.4 429,003 + -0.4 429,004 - +2.7 429,004 - -0.7 429,010 + -1.3 429,010 + +0.5 429,010 + +0.7 429,011 - +0.0 429,022 + +0.4 429,023 - +1.4 429,051 + -2.6 429,051 + +0.4 429,057 + +0.2 429,057 + -0.5 429,057 + +0.6 429,057 + -1.0 429,057 + +1.0 429,058 - -1.7 429,058 - -0.3 429,058 - -0.6 429,058 - -0.7 429,070 + -0.1 429,098 + -0.0 429,117 + -0.5 429,117 + +0.6 429,117 + +0.1 429,117 + -1.2 429,118 - -2.5 429,118 - +0.5 429,118 - -1.1 429,118 - +2.1 429,118 - +0.5 429,118 - +0.5 429,118 - +0.5 429,118 - +0.7 429,118 - +1.1 429,118 - +0.5
Or see this region's nucleotide sequence