Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0045

Experiment: KB with Fusaric 250 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Fusaric 250 ug/ml
44,897	+		Psyr_0043	0.85	+0.1
44,898	-		Psyr_0043	0.85	-0.6
44,919	+		Psyr_0043	0.87	+0.8
44,919	+		Psyr_0043	0.87	-0.3
44,920	-		Psyr_0043	0.87	+0.2
44,985	+				-1.7
45,216	+				+1.2
45,217	-				-0.6
45,217	-				-0.3
45,219	+				-1.8
45,219	+				-0.3
45,219	+				-1.4
45,219	+				+1.7
45,219	+				+0.0
45,220	-				-1.2
45,220	-				+0.8
45,220	-				+0.5
45,220	-				+1.6
45,220	-				-0.3
45,239	+				+0.5
45,280	+				-0.1
45,280	+				+0.4
45,280	+				-0.1
45,280	+				+1.9
45,280	+				-1.7
45,280	+				+0.9
45,280	+				-1.4
45,280	+				-0.1
45,280	+				-0.5
45,280	+				+1.8
45,280	+				-0.1
45,280	+				+0.8
45,280	+				+0.5
45,281	-				+1.7
45,281	-				-0.7
45,281	-				+0.7
45,281	-				-1.9
45,281	-				-0.4
45,281	-				+1.3
45,285	-				+0.8
45,295	+		Psyr_0044	0.12	+0.1
45,358	+		Psyr_0044	0.23	-1.4
45,358	+		Psyr_0044	0.23	+0.1
45,779	+				+0.7
45,780	-				-0.2
45,801	+				+0.2
45,801	+				+0.0
45,801	+				+1.5
45,809	+				+0.9
45,809	+				-0.1
45,809	+				-0.4
45,845	+				-0.4
45,845	+				+0.5
45,846	-				-1.8
45,849	+				+0.2
45,850	-				+2.9
45,850	-				+0.3
45,850	-				-2.7
45,850	-				+0.8
45,850	-				-0.2
45,850	-				-1.1
45,850	-				-0.0
46,153	+		Psyr_0045	0.13	+1.0
46,153	+		Psyr_0045	0.13	-0.3
46,154	-		Psyr_0045	0.13	+0.7
46,154	-		Psyr_0045	0.13	+1.1
46,225	+		Psyr_0045	0.16	+0.0
46,226	-		Psyr_0045	0.16	+0.6
46,226	-		Psyr_0045	0.16	+0.4
46,525	+		Psyr_0045	0.31	+0.1
46,526	-		Psyr_0045	0.31	+0.2
46,552	+		Psyr_0045	0.32	+0.3
46,552	+		Psyr_0045	0.32	+1.1
46,552	+		Psyr_0045	0.32	-3.0
46,552	+		Psyr_0045	0.32	+0.9
46,552	+		Psyr_0045	0.32	-0.1
46,552	+		Psyr_0045	0.32	+0.5
46,552	+		Psyr_0045	0.32	+4.2
46,553	-		Psyr_0045	0.32	+0.4
46,553	-		Psyr_0045	0.32	+1.6
46,553	-		Psyr_0045	0.32	-0.7
46,556	-		Psyr_0045	0.33	+0.8
46,556	-		Psyr_0045	0.33	+0.9
46,570	+		Psyr_0045	0.33	+1.5
46,571	-		Psyr_0045	0.33	+1.2
46,571	-		Psyr_0045	0.33	+0.6
46,603	+		Psyr_0045	0.35	+1.3
46,603	+		Psyr_0045	0.35	-1.7
46,729	+		Psyr_0045	0.41	+0.8
46,729	+		Psyr_0045	0.41	-1.1
46,729	+		Psyr_0045	0.41	-2.8
46,729	+		Psyr_0045	0.41	-0.7
46,729	+		Psyr_0045	0.41	-0.6
46,729	+		Psyr_0045	0.41	-0.0
46,852	+		Psyr_0045	0.47	-0.9
46,852	+		Psyr_0045	0.47	-0.0
46,853	-		Psyr_0045	0.47	+0.2
46,853	-		Psyr_0045	0.47	+0.1
46,903	+		Psyr_0045	0.49	-0.5
46,931	-		Psyr_0045	0.51	+1.8
46,960	+		Psyr_0045	0.52	+0.2
46,960	+		Psyr_0045	0.52	-1.7
46,960	+		Psyr_0045	0.52	-0.7
46,961	-		Psyr_0045	0.52	+0.5
46,961	-		Psyr_0045	0.52	-0.3
46,961	-		Psyr_0045	0.52	+0.9
46,961	-		Psyr_0045	0.52	+2.3
47,125	+		Psyr_0045	0.60	-0.5
47,125	+		Psyr_0045	0.60	-2.2
47,622	+		Psyr_0045	0.84	+0.6
47,623	-		Psyr_0045	0.85	+0.2
47,660	-		Psyr_0045	0.86	+2.3
47,660	-		Psyr_0045	0.86	-1.8
47,660	-		Psyr_0045	0.86	+0.5
47,660	-		Psyr_0045	0.86	+1.4
47,719	+		Psyr_0045	0.89	+0.3
47,719	+		Psyr_0045	0.89	+0.5
47,719	+		Psyr_0045	0.89	+0.3
47,720	-		Psyr_0045	0.89	+0.9
47,725	+		Psyr_0045	0.89	-0.3
47,725	+		Psyr_0045	0.89	+4.3
47,725	+		Psyr_0045	0.89	+0.1
47,725	+		Psyr_0045	0.89	+0.7
47,725	+		Psyr_0045	0.89	-0.2
47,725	+		Psyr_0045	0.89	-1.6
47,725	+		Psyr_0045	0.89	+1.0
47,726	-		Psyr_0045	0.90	-1.7
47,726	-		Psyr_0045	0.90	-0.1
47,726	-		Psyr_0045	0.90	+0.6
47,945	+				+0.3
47,953	+				-3.6
47,953	+				+0.4
48,099	-		Psyr_0046	0.56	-0.5
48,175	+		Psyr_0046	0.82	+0.3
48,175	+		Psyr_0046	0.82	-0.3
48,175	+		Psyr_0046	0.82	-0.2
48,175	+		Psyr_0046	0.82	+0.6
48,176	-		Psyr_0046	0.82	-1.4
48,176	-		Psyr_0046	0.82	+1.2
48,176	-		Psyr_0046	0.82	-1.7
48,176	-		Psyr_0046	0.82	+0.1
48,226	-				+0.9
48,235	+				-0.3
48,235	+				+0.3
48,235	+				-1.0
48,235	+				+0.1
48,236	-				-1.1
48,236	-				+0.3
48,236	-				-0.5
48,236	-				+0.6
48,236	-				-1.4
48,236	-				-0.3
48,240	-				-3.1
48,270	+				-1.7
48,270	+				-0.6
48,270	+				+0.9
48,270	+				-2.6
48,271	-				-0.8
48,271	-				-0.7
48,273	+				-0.7
48,273	+				-0.8
48,273	+				-2.7
48,273	+				-0.4
48,273	+				+1.9
48,273	+				-1.8
48,273	+				-0.6
48,274	-				-0.1
48,274	-				+2.2
48,274	-				+0.6
48,277	+				-2.8
48,277	+				+0.5
48,348	+		Psyr_0047	0.25	-2.2
48,348	+		Psyr_0047	0.25	+2.3
48,349	-		Psyr_0047	0.25	-0.1
48,368	+		Psyr_0047	0.32	-0.3
48,368	+		Psyr_0047	0.32	-0.7
48,368	+		Psyr_0047	0.32	+1.9
48,369	-		Psyr_0047	0.32	+1.7
48,369	-		Psyr_0047	0.32	+0.6
48,447	+		Psyr_0047	0.58	+0.2
48,447	+		Psyr_0047	0.58	-1.9
48,447	+		Psyr_0047	0.58	-0.3
48,448	-		Psyr_0047	0.58	+0.4
48,448	-		Psyr_0047	0.58	-0.1
48,448	-		Psyr_0047	0.58	-2.3
48,448	-		Psyr_0047	0.58	+0.5
48,448	-		Psyr_0047	0.58	-0.2
48,448	-		Psyr_0047	0.58	+0.2
48,448	-		Psyr_0047	0.58	+0.2
48,451	+		Psyr_0047	0.59	-0.5
48,464	+		Psyr_0047	0.63	+0.2
48,465	-		Psyr_0047	0.64	-0.9
48,468	+		Psyr_0047	0.65	+0.6
48,468	+		Psyr_0047	0.65	+1.1
48,468	+		Psyr_0047	0.65	-1.2
48,468	+		Psyr_0047	0.65	-0.4
48,468	+		Psyr_0047	0.65	-0.7
48,469	-		Psyr_0047	0.65	-0.3
48,469	-		Psyr_0047	0.65	-1.1
48,469	-		Psyr_0047	0.65	-1.2
48,469	-		Psyr_0047	0.65	-0.1
48,512	+		Psyr_0047	0.79	+2.1
48,523	+		Psyr_0047	0.83	-0.5
48,568	+				-0.1
48,568	+				+0.2
48,569	-				+2.2
48,592	-				-0.2
48,635	+				+0.4
48,635	+				+1.3
48,635	+				-1.8
48,636	-				+0.7
48,636	-				-0.8
48,636	-				+0.2
48,636	-				-1.4
48,669	+				-0.2
48,834	-		Psyr_0048	0.72	+0.9
48,885	+				-0.2
48,885	+				+0.2
48,886	-				-0.1
48,886	-				+0.8
48,886	-				-0.5
48,886	-				+1.5
48,886	-				-1.2
48,886	-				+1.8