Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_002729

Experiment: RCH2_defined_glucose_5mM with Ferulic Acid 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	RCH2_defined_glucose_5mM with Ferulic Acid 5 mM
3,073,296	+		ABIE53_002728	0.64	+0.3
3,073,297	-		ABIE53_002728	0.64	+1.3
3,073,942	-				+0.3
3,074,134	+				-0.3
3,074,134	+				-0.1
3,074,135	-				-0.9
3,074,167	+				-0.9
3,074,168	-				+0.3
3,074,252	+				+0.7
3,074,252	+				-0.4
3,074,253	-				-0.6
3,074,253	-				-0.5
3,074,253	-				+0.4
3,074,273	-				-0.3
3,074,273	-				-1.5
3,074,337	-				-1.3
3,074,557	+		ABIE53_002729	0.14	-2.4
3,074,558	-		ABIE53_002729	0.14	-3.0
3,074,558	-		ABIE53_002729	0.14	-0.3
3,074,608	+		ABIE53_002729	0.17	-0.3
3,074,608	+		ABIE53_002729	0.17	-0.8
3,074,609	-		ABIE53_002729	0.17	-2.6
3,074,792	+		ABIE53_002729	0.27	-0.6
3,075,145	+		ABIE53_002729	0.46	-1.3
3,075,145	+		ABIE53_002729	0.46	-1.6
3,075,145	+		ABIE53_002729	0.46	-2.2
3,075,145	+		ABIE53_002729	0.46	-1.5
3,075,146	-		ABIE53_002729	0.46	-3.4
3,075,146	-		ABIE53_002729	0.46	-0.8
3,075,173	+		ABIE53_002729	0.47	-1.4
3,075,173	+		ABIE53_002729	0.47	-0.9
3,075,173	+		ABIE53_002729	0.47	+1.2
3,075,174	-		ABIE53_002729	0.47	-2.1
3,075,174	-		ABIE53_002729	0.47	-0.3
3,075,199	+		ABIE53_002729	0.48	-2.9
3,075,200	-		ABIE53_002729	0.48	+0.7
3,075,382	+		ABIE53_002729	0.58	-1.8
3,075,383	-		ABIE53_002729	0.58	-2.5
3,075,383	-		ABIE53_002729	0.58	-1.8
3,075,416	-		ABIE53_002729	0.60	-1.8
3,075,416	-		ABIE53_002729	0.60	-2.0
3,075,463	+		ABIE53_002729	0.62	-1.3
3,075,515	-		ABIE53_002729	0.65	-1.3
3,075,515	-		ABIE53_002729	0.65	-1.9
3,075,515	-		ABIE53_002729	0.65	-1.9
3,075,515	-		ABIE53_002729	0.65	-2.8
3,075,515	-		ABIE53_002729	0.65	-0.6
3,075,515	-		ABIE53_002729	0.65	-0.5
3,075,556	+		ABIE53_002729	0.67	-1.2
3,075,597	-		ABIE53_002729	0.69	+0.6
3,075,597	-		ABIE53_002729	0.69	-0.9
3,075,800	+		ABIE53_002729	0.80	-0.6
3,075,800	+		ABIE53_002729	0.80	-2.2
3,075,801	-		ABIE53_002729	0.80	-2.7
3,075,801	-		ABIE53_002729	0.80	-1.3
3,075,961	+		ABIE53_002729	0.89	-1.6
3,075,961	+		ABIE53_002729	0.89	-2.9
3,075,962	-		ABIE53_002729	0.89	-0.6
3,075,962	-		ABIE53_002729	0.89	-1.1
3,076,076	-				-0.5
3,076,137	+				-1.8
3,076,137	+				-2.2
3,076,138	-				-1.7
3,076,138	-				-3.4
3,076,163	+				-0.9
3,076,163	+				+0.3
3,076,163	+				-1.8
3,076,164	-				-0.4
3,076,164	-				-1.8
3,076,164	-				-1.7
3,076,164	-				-2.7
3,076,164	-				-0.2
3,076,164	-				+1.1
3,076,221	+				-1.9
3,076,221	+				-0.9
3,076,222	-				+0.1
3,076,222	-				-0.2
3,076,249	+				-1.3
3,076,249	+				-0.2
3,076,250	-				+0.4
3,076,250	-				-0.4
3,076,250	-				+1.2
3,076,250	-				-0.1
3,076,250	-				-0.6
3,076,250	-				+0.8
3,076,285	+				+0.3
3,076,285	+				-0.8
3,076,285	+				-0.9
3,076,285	+				+0.9
3,076,286	-				+1.2
3,076,286	-				+1.4
3,076,296	+				-1.3
3,076,296	+				+1.0
3,076,296	+				+1.2
3,076,296	+				+1.7
3,076,296	+				-1.0
3,076,296	+				-0.5
3,076,296	+				-0.5
3,076,297	-				-0.4
3,076,297	-				+0.1
3,076,297	-				+0.2
3,076,297	-				+0.7
3,076,316	-				-0.6
3,076,379	-				-1.0
3,076,379	-				+1.0
3,076,407	+				+1.7
3,076,502	-		ABIE53_002730	0.13	+2.4
3,076,502	-		ABIE53_002730	0.13	-1.3
3,076,548	+		ABIE53_002730	0.20	+0.1
3,076,548	+		ABIE53_002730	0.20	+0.3
3,076,548	+		ABIE53_002730	0.20	-0.2
3,076,549	-		ABIE53_002730	0.21	-1.0
3,076,549	-		ABIE53_002730	0.21	+0.1
3,076,549	-		ABIE53_002730	0.21	+0.5
3,076,549	-		ABIE53_002730	0.21	+0.2
3,076,549	-		ABIE53_002730	0.21	+0.0
3,076,549	-		ABIE53_002730	0.21	-0.1
3,076,549	-		ABIE53_002730	0.21	-0.3
3,076,549	-		ABIE53_002730	0.21	-0.1
3,076,549	-		ABIE53_002730	0.21	+0.4
3,076,549	-		ABIE53_002730	0.21	-0.9
3,076,549	-		ABIE53_002730	0.21	-0.5
3,076,560	+		ABIE53_002730	0.23	+0.5
3,076,560	+		ABIE53_002730	0.23	+1.0
3,076,561	-		ABIE53_002730	0.23	-0.8
3,076,561	-		ABIE53_002730	0.23	-1.1
3,076,561	-		ABIE53_002730	0.23	-1.4
3,076,590	+		ABIE53_002730	0.28	+0.7
3,076,590	+		ABIE53_002730	0.28	-0.0
3,076,591	-		ABIE53_002730	0.28	-0.5
3,076,591	-		ABIE53_002730	0.28	+1.3
3,076,737	+		ABIE53_002730	0.52	-1.3
3,076,737	+		ABIE53_002730	0.52	-0.9
3,076,737	+		ABIE53_002730	0.52	-0.9
3,076,738	-		ABIE53_002730	0.53	-2.8
3,076,738	-		ABIE53_002730	0.53	-0.3
3,076,738	-		ABIE53_002730	0.53	+0.8
3,076,738	-		ABIE53_002730	0.53	-0.1
3,076,738	-		ABIE53_002730	0.53	-0.3
3,076,738	-		ABIE53_002730	0.53	+2.6
3,076,738	-		ABIE53_002730	0.53	+0.9
3,076,738	-		ABIE53_002730	0.53	-0.6
3,076,738	-		ABIE53_002730	0.53	-0.4
3,076,738	-		ABIE53_002730	0.53	-0.6
3,076,738	-		ABIE53_002730	0.53	+0.3
3,076,738	-		ABIE53_002730	0.53	-0.1
3,076,785	+		ABIE53_002730	0.61	+0.4
3,076,786	-		ABIE53_002730	0.61	-0.1
3,076,786	-		ABIE53_002730	0.61	-0.3
3,076,821	+		ABIE53_002730	0.67	+0.5
3,076,822	-		ABIE53_002730	0.67	-0.1
3,076,822	-		ABIE53_002730	0.67	+0.1
3,076,939	-		ABIE53_002730	0.87	-0.7
3,076,939	-		ABIE53_002730	0.87	-1.5
3,076,939	-		ABIE53_002730	0.87	+1.7
3,076,939	-		ABIE53_002730	0.87	-0.6
3,076,966	+				+0.7
3,076,966	+				+0.5
3,076,967	-				+0.7
3,077,023	-				-0.6
3,077,023	-				-1.4
3,077,023	-				+1.3