Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2401

Experiment: Varel_Bryant_medium_Glucose with Ethanol 3.33 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Varel_Bryant_medium_Glucose with Ethanol 3.33 vol%
2,995,663	-				-0.4
2,995,741	+				-0.2
2,995,773	-				-1.1
2,995,773	-				+0.0
2,995,845	+				-0.5
2,995,845	+				+1.2
2,995,855	+				-2.3
2,995,855	+				+0.0
2,995,922	-				-1.1
2,995,961	+				-0.4
2,996,077	+		BT2400	0.30	+0.0
2,996,078	-		BT2400	0.30	+0.1
2,996,147	+		BT2400	0.42	+0.8
2,996,147	+		BT2400	0.42	+0.1
2,996,148	-		BT2400	0.43	-0.1
2,996,149	+		BT2400	0.43	-0.7
2,996,235	-		BT2400	0.58	+0.2
2,996,235	-		BT2400	0.58	-1.2
2,996,416	-		BT2400	0.89	-0.3
2,996,463	-				-0.2
2,996,465	+				+0.6
2,996,466	+				+0.0
2,996,490	-				-0.4
2,996,490	-				+0.1
2,996,502	-				+0.9
2,996,528	-				-2.1
2,996,654	+		BT2401	0.11	-0.4
2,996,672	+		BT2401	0.12	-4.2
2,996,752	+		BT2401	0.19	-3.5
2,996,752	+		BT2401	0.19	-4.2
2,996,806	+		BT2401	0.23	-3.5
2,996,810	+		BT2401	0.23	-1.6
2,996,811	-		BT2401	0.23	-3.2
2,996,811	-		BT2401	0.23	-4.5
2,996,901	-		BT2401	0.30	-4.1
2,996,910	+		BT2401	0.31	-3.2
2,996,938	+		BT2401	0.33	-4.8
2,996,938	+		BT2401	0.33	-2.1
2,996,956	+		BT2401	0.34	-2.9
2,996,956	+		BT2401	0.34	-0.7
2,996,956	+		BT2401	0.34	-2.0
2,996,957	-		BT2401	0.34	-2.1
2,997,115	+		BT2401	0.46	-4.8
2,997,116	-		BT2401	0.46	-3.1
2,997,116	-		BT2401	0.46	-4.0
2,997,122	-		BT2401	0.47	-1.7
2,997,128	-		BT2401	0.47	-4.4
2,997,128	-		BT2401	0.47	-2.4
2,997,156	+		BT2401	0.50	-4.3
2,997,276	-		BT2401	0.59	-2.4
2,997,343	+		BT2401	0.64	-0.7
2,997,344	-		BT2401	0.64	-1.9
2,997,345	+		BT2401	0.64	-2.3
2,997,346	-		BT2401	0.64	-4.1
2,997,346	-		BT2401	0.64	-3.3
2,997,395	+		BT2401	0.68	-1.6
2,997,486	+		BT2401	0.75	-1.9
2,997,532	+		BT2401	0.78	-3.5
2,997,532	+		BT2401	0.78	-1.0
2,997,533	-		BT2401	0.78	-2.0
2,997,583	+		BT2401	0.82	-2.8
2,997,583	+		BT2401	0.82	-4.8
2,997,589	-		BT2401	0.83	-3.2
2,997,675	+		BT2401	0.89	-1.4
2,997,680	+		BT2401	0.90	-1.2
2,997,681	-		BT2401	0.90	-6.5
2,997,681	-		BT2401	0.90	-5.0
2,997,710	+				-1.2
2,997,798	-				-2.4
2,997,805	+				-2.3
2,997,806	-				-3.6
2,997,842	+				-2.2
2,997,890	+				-1.2
2,997,901	-				-5.9
2,997,901	-				-6.5
2,997,952	+		BT2402	0.12	-2.4
2,997,989	-		BT2402	0.15	-4.5
2,998,048	-		BT2402	0.20	-4.0
2,998,058	+		BT2402	0.20	-2.9
2,998,058	+		BT2402	0.20	-1.9
2,998,190	+		BT2402	0.31	-2.7
2,998,195	+		BT2402	0.32	-2.9
2,998,210	+		BT2402	0.33	-2.7
2,998,215	+		BT2402	0.33	-4.7
2,998,215	+		BT2402	0.33	-2.2
2,998,215	+		BT2402	0.33	-2.9
2,998,216	-		BT2402	0.33	-0.4
2,998,216	-		BT2402	0.33	-3.5
2,998,250	+		BT2402	0.36	-3.2
2,998,250	+		BT2402	0.36	-4.9
2,998,298	-		BT2402	0.40	-1.6
2,998,454	-		BT2402	0.53	-2.9
2,998,460	-		BT2402	0.53	-0.9
2,998,471	+		BT2402	0.54	-2.5
2,998,471	+		BT2402	0.54	-3.5
2,998,574	-		BT2402	0.62	-2.7
2,998,618	+		BT2402	0.66	-3.7
2,998,659	+		BT2402	0.69	-5.1
2,998,660	-		BT2402	0.70	-3.5
2,998,660	-		BT2402	0.70	-2.6
2,998,691	+		BT2402	0.72	-7.0
2,998,691	+		BT2402	0.72	-1.9
2,998,692	-		BT2402	0.72	-1.2
2,998,692	-		BT2402	0.72	-3.5
2,998,693	+		BT2402	0.72	-3.3
2,998,693	+		BT2402	0.72	-1.6
2,998,693	+		BT2402	0.72	-0.4
2,998,693	+		BT2402	0.72	-1.6
2,998,693	+		BT2402	0.72	-2.1
2,998,694	-		BT2402	0.72	-2.8
2,998,694	-		BT2402	0.72	-2.4
2,998,694	-		BT2402	0.72	-5.2
2,998,694	-		BT2402	0.72	-3.6
2,998,694	-		BT2402	0.72	-7.3
2,998,744	+		BT2402	0.76	-7.0