Experiment: KB with Fusaric 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4855 and Psyr_4856 are separated by 51 nucleotides Psyr_4856 and Psyr_4857 overlap by 4 nucleotides Psyr_4857 and Psyr_4858 are separated by 270 nucleotides
Psyr_4855: Psyr_4855 - conserved hypothetical protein, at 5,762,058 to 5,762,816
_4855
Psyr_4856: Psyr_4856 - conserved hypothetical protein, at 5,762,868 to 5,763,059
_4856
Psyr_4857: Psyr_4857 - conserved hypothetical protein, at 5,763,056 to 5,763,997
_4857
Psyr_4858: Psyr_4858 - Penicillin amidase, at 5,764,268 to 5,766,655
_4858
Position (kb) 5763
5764 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5762.118 kb on + strand at 5762.118 kb on + strand at 5762.118 kb on + strand at 5762.118 kb on + strand at 5762.118 kb on + strand at 5762.130 kb on + strand at 5762.130 kb on + strand at 5762.130 kb on + strand at 5762.130 kb on + strand at 5762.131 kb on - strand at 5762.131 kb on - strand at 5762.131 kb on - strand at 5762.131 kb on - strand at 5762.131 kb on - strand at 5762.131 kb on - strand at 5762.131 kb on - strand at 5762.200 kb on - strand, within Psyr_4855 at 5762.226 kb on + strand, within Psyr_4855 at 5762.661 kb on + strand, within Psyr_4855 at 5762.661 kb on + strand, within Psyr_4855 at 5762.661 kb on + strand, within Psyr_4855 at 5762.661 kb on + strand, within Psyr_4855 at 5762.661 kb on + strand, within Psyr_4855 at 5762.661 kb on + strand, within Psyr_4855 at 5762.661 kb on + strand, within Psyr_4855 at 5762.661 kb on + strand, within Psyr_4855 at 5762.661 kb on + strand, within Psyr_4855 at 5762.662 kb on - strand, within Psyr_4855 at 5762.662 kb on - strand, within Psyr_4855 at 5762.662 kb on - strand, within Psyr_4855 at 5762.662 kb on - strand, within Psyr_4855 at 5762.662 kb on - strand, within Psyr_4855 at 5762.736 kb on + strand, within Psyr_4855 at 5762.736 kb on + strand, within Psyr_4855 at 5762.740 kb on - strand, within Psyr_4855 at 5762.815 kb on - strand at 5762.815 kb on - strand at 5762.867 kb on + strand at 5762.867 kb on + strand at 5762.867 kb on + strand at 5762.867 kb on + strand at 5762.867 kb on + strand at 5762.868 kb on - strand at 5762.905 kb on + strand, within Psyr_4856 at 5762.905 kb on + strand, within Psyr_4856 at 5762.905 kb on + strand, within Psyr_4856 at 5762.906 kb on - strand, within Psyr_4856 at 5762.906 kb on - strand, within Psyr_4856 at 5762.906 kb on - strand, within Psyr_4856 at 5763.022 kb on + strand, within Psyr_4856 at 5763.023 kb on - strand, within Psyr_4856 at 5763.058 kb on - strand at 5763.423 kb on + strand, within Psyr_4857 at 5763.423 kb on + strand, within Psyr_4857 at 5763.424 kb on - strand, within Psyr_4857 at 5763.424 kb on - strand, within Psyr_4857 at 5763.424 kb on - strand, within Psyr_4857 at 5763.741 kb on + strand, within Psyr_4857 at 5763.759 kb on + strand, within Psyr_4857 at 5763.759 kb on + strand, within Psyr_4857 at 5763.759 kb on + strand, within Psyr_4857 at 5763.759 kb on + strand, within Psyr_4857 at 5763.759 kb on + strand, within Psyr_4857 at 5763.759 kb on + strand, within Psyr_4857 at 5763.760 kb on - strand, within Psyr_4857 at 5763.760 kb on - strand, within Psyr_4857 at 5763.809 kb on + strand, within Psyr_4857 at 5763.809 kb on + strand, within Psyr_4857 at 5763.809 kb on + strand, within Psyr_4857 at 5763.809 kb on + strand, within Psyr_4857 at 5763.809 kb on + strand, within Psyr_4857 at 5763.810 kb on - strand, within Psyr_4857 at 5763.810 kb on - strand, within Psyr_4857 at 5763.810 kb on - strand, within Psyr_4857 at 5763.810 kb on - strand, within Psyr_4857 at 5763.864 kb on - strand, within Psyr_4857 at 5763.897 kb on + strand, within Psyr_4857 at 5763.909 kb on + strand at 5763.910 kb on - strand at 5764.037 kb on + strand at 5764.043 kb on + strand at 5764.073 kb on + strand at 5764.073 kb on + strand at 5764.074 kb on - strand at 5764.083 kb on + strand at 5764.093 kb on + strand at 5764.094 kb on - strand at 5764.094 kb on - strand at 5764.094 kb on - strand at 5764.094 kb on - strand at 5764.094 kb on - strand at 5764.229 kb on - strand at 5764.245 kb on + strand at 5764.254 kb on + strand at 5764.254 kb on + strand at 5764.255 kb on - strand at 5764.255 kb on - strand at 5764.255 kb on - strand at 5764.290 kb on + strand at 5764.290 kb on + strand at 5764.290 kb on + strand at 5764.291 kb on - strand at 5764.291 kb on - strand at 5764.291 kb on - strand at 5764.331 kb on + strand at 5764.331 kb on + strand at 5764.332 kb on - strand at 5764.335 kb on + strand at 5764.335 kb on + strand at 5764.335 kb on + strand at 5764.335 kb on + strand at 5764.335 kb on + strand at 5764.335 kb on + strand at 5764.335 kb on + strand at 5764.336 kb on - strand at 5764.336 kb on - strand at 5764.336 kb on - strand at 5764.336 kb on - strand at 5764.336 kb on - strand at 5764.336 kb on - strand at 5764.336 kb on - strand at 5764.336 kb on - strand at 5764.339 kb on + strand at 5764.340 kb on - strand at 5764.340 kb on - strand at 5764.340 kb on - strand at 5764.472 kb on + strand at 5764.545 kb on + strand, within Psyr_4858 at 5764.545 kb on + strand, within Psyr_4858 at 5764.616 kb on + strand, within Psyr_4858 at 5764.616 kb on + strand, within Psyr_4858 at 5764.616 kb on + strand, within Psyr_4858 at 5764.616 kb on + strand, within Psyr_4858 at 5764.616 kb on + strand, within Psyr_4858 at 5764.616 kb on + strand, within Psyr_4858 at 5764.616 kb on + strand, within Psyr_4858 at 5764.616 kb on + strand, within Psyr_4858 at 5764.616 kb on + strand, within Psyr_4858 at 5764.616 kb on + strand, within Psyr_4858 at 5764.616 kb on + strand, within Psyr_4858 at 5764.617 kb on - strand, within Psyr_4858 at 5764.617 kb on - strand, within Psyr_4858 at 5764.617 kb on - strand, within Psyr_4858 at 5764.617 kb on - strand, within Psyr_4858 at 5764.617 kb on - strand, within Psyr_4858 at 5764.617 kb on - strand, within Psyr_4858 at 5764.617 kb on - strand, within Psyr_4858 at 5764.617 kb on - strand, within Psyr_4858 at 5764.617 kb on - strand, within Psyr_4858 at 5764.617 kb on - strand, within Psyr_4858 at 5764.617 kb on - strand, within Psyr_4858 at 5764.617 kb on - strand, within Psyr_4858 at 5764.617 kb on - strand, within Psyr_4858 at 5764.617 kb on - strand, within Psyr_4858 at 5764.617 kb on - strand, within Psyr_4858 at 5764.667 kb on + strand, within Psyr_4858 at 5764.667 kb on + strand, within Psyr_4858 at 5764.667 kb on + strand, within Psyr_4858 at 5764.667 kb on + strand, within Psyr_4858 at 5764.668 kb on - strand, within Psyr_4858 at 5764.688 kb on + strand, within Psyr_4858 at 5764.781 kb on + strand, within Psyr_4858 at 5764.832 kb on + strand, within Psyr_4858 at 5764.832 kb on + strand, within Psyr_4858 at 5764.832 kb on + strand, within Psyr_4858 at 5764.832 kb on + strand, within Psyr_4858 at 5764.832 kb on + strand, within Psyr_4858 at 5764.832 kb on + strand, within Psyr_4858 at 5764.832 kb on + strand, within Psyr_4858 at 5764.833 kb on - strand, within Psyr_4858 at 5764.833 kb on - strand, within Psyr_4858 at 5764.833 kb on - strand, within Psyr_4858 at 5764.833 kb on - strand, within Psyr_4858 at 5764.833 kb on - strand, within Psyr_4858 at 5764.859 kb on + strand, within Psyr_4858 at 5764.859 kb on + strand, within Psyr_4858 at 5764.859 kb on + strand, within Psyr_4858 at 5764.859 kb on + strand, within Psyr_4858 at 5764.860 kb on - strand, within Psyr_4858 at 5764.860 kb on - strand, within Psyr_4858
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Fusaric 250 ug/ml remove 5,762,118 + -1.0 5,762,118 + -0.2 5,762,118 + +1.0 5,762,118 + -0.3 5,762,118 + -0.0 5,762,130 + +1.0 5,762,130 + +0.6 5,762,130 + -0.3 5,762,130 + -2.1 5,762,131 - -1.6 5,762,131 - -0.2 5,762,131 - +1.4 5,762,131 - +1.7 5,762,131 - -0.5 5,762,131 - +0.3 5,762,131 - -0.6 5,762,200 - Psyr_4855 0.19 -0.1 5,762,226 + Psyr_4855 0.22 -0.3 5,762,661 + Psyr_4855 0.79 +1.5 5,762,661 + Psyr_4855 0.79 -0.0 5,762,661 + Psyr_4855 0.79 -0.0 5,762,661 + Psyr_4855 0.79 +0.3 5,762,661 + Psyr_4855 0.79 -0.3 5,762,661 + Psyr_4855 0.79 -0.8 5,762,661 + Psyr_4855 0.79 +1.0 5,762,661 + Psyr_4855 0.79 -0.4 5,762,661 + Psyr_4855 0.79 +0.1 5,762,662 - Psyr_4855 0.80 +0.5 5,762,662 - Psyr_4855 0.80 +0.5 5,762,662 - Psyr_4855 0.80 +0.5 5,762,662 - Psyr_4855 0.80 +0.4 5,762,662 - Psyr_4855 0.80 -0.0 5,762,736 + Psyr_4855 0.89 +0.6 5,762,736 + Psyr_4855 0.89 -0.5 5,762,740 - Psyr_4855 0.90 +0.3 5,762,815 - +0.8 5,762,815 - -0.8 5,762,867 + -1.3 5,762,867 + -0.6 5,762,867 + +1.2 5,762,867 + +0.6 5,762,867 + -0.3 5,762,868 - -0.2 5,762,905 + Psyr_4856 0.19 +1.7 5,762,905 + Psyr_4856 0.19 -2.5 5,762,905 + Psyr_4856 0.19 +0.6 5,762,906 - Psyr_4856 0.20 -0.8 5,762,906 - Psyr_4856 0.20 -0.2 5,762,906 - Psyr_4856 0.20 -1.2 5,763,022 + Psyr_4856 0.80 -1.0 5,763,023 - Psyr_4856 0.81 -0.0 5,763,058 - -0.6 5,763,423 + Psyr_4857 0.39 +0.8 5,763,423 + Psyr_4857 0.39 +0.8 5,763,424 - Psyr_4857 0.39 +0.7 5,763,424 - Psyr_4857 0.39 +0.6 5,763,424 - Psyr_4857 0.39 +1.1 5,763,741 + Psyr_4857 0.73 +0.2 5,763,759 + Psyr_4857 0.75 +0.4 5,763,759 + Psyr_4857 0.75 -1.3 5,763,759 + Psyr_4857 0.75 +0.3 5,763,759 + Psyr_4857 0.75 +2.8 5,763,759 + Psyr_4857 0.75 +0.3 5,763,759 + Psyr_4857 0.75 +1.8 5,763,760 - Psyr_4857 0.75 -0.7 5,763,760 - Psyr_4857 0.75 +0.2 5,763,809 + Psyr_4857 0.80 -0.2 5,763,809 + Psyr_4857 0.80 +0.3 5,763,809 + Psyr_4857 0.80 +0.1 5,763,809 + Psyr_4857 0.80 +0.1 5,763,809 + Psyr_4857 0.80 +2.9 5,763,810 - Psyr_4857 0.80 +0.4 5,763,810 - Psyr_4857 0.80 -0.5 5,763,810 - Psyr_4857 0.80 -0.7 5,763,810 - Psyr_4857 0.80 -0.4 5,763,864 - Psyr_4857 0.86 +0.6 5,763,897 + Psyr_4857 0.89 +0.7 5,763,909 + +0.1 5,763,910 - +0.6 5,764,037 + +0.1 5,764,043 + -1.3 5,764,073 + -2.3 5,764,073 + +0.7 5,764,074 - -1.8 5,764,083 + +0.5 5,764,093 + +1.1 5,764,094 - +1.3 5,764,094 - +0.2 5,764,094 - +0.1 5,764,094 - -1.0 5,764,094 - -2.2 5,764,229 - +0.8 5,764,245 + -0.3 5,764,254 + +0.6 5,764,254 + -1.2 5,764,255 - -1.4 5,764,255 - +1.6 5,764,255 - +0.7 5,764,290 + +0.8 5,764,290 + -0.8 5,764,290 + +0.8 5,764,291 - -0.2 5,764,291 - -0.4 5,764,291 - +0.2 5,764,331 + -0.3 5,764,331 + +1.6 5,764,332 - -0.6 5,764,335 + +1.2 5,764,335 + +0.6 5,764,335 + +0.8 5,764,335 + +1.2 5,764,335 + -1.3 5,764,335 + +0.7 5,764,335 + +0.2 5,764,336 - +1.4 5,764,336 - +0.0 5,764,336 - -0.2 5,764,336 - +0.4 5,764,336 - +0.2 5,764,336 - -1.4 5,764,336 - +1.2 5,764,336 - -1.0 5,764,339 + -0.3 5,764,340 - +0.2 5,764,340 - -0.1 5,764,340 - -0.5 5,764,472 + -0.8 5,764,545 + Psyr_4858 0.12 -0.7 5,764,545 + Psyr_4858 0.12 +0.4 5,764,616 + Psyr_4858 0.15 +1.0 5,764,616 + Psyr_4858 0.15 +0.4 5,764,616 + Psyr_4858 0.15 +1.1 5,764,616 + Psyr_4858 0.15 -0.6 5,764,616 + Psyr_4858 0.15 +2.8 5,764,616 + Psyr_4858 0.15 +0.2 5,764,616 + Psyr_4858 0.15 -0.7 5,764,616 + Psyr_4858 0.15 -0.7 5,764,616 + Psyr_4858 0.15 +1.0 5,764,616 + Psyr_4858 0.15 -0.4 5,764,616 + Psyr_4858 0.15 -0.6 5,764,617 - Psyr_4858 0.15 -0.2 5,764,617 - Psyr_4858 0.15 +0.0 5,764,617 - Psyr_4858 0.15 -0.5 5,764,617 - Psyr_4858 0.15 +0.2 5,764,617 - Psyr_4858 0.15 +0.7 5,764,617 - Psyr_4858 0.15 +1.0 5,764,617 - Psyr_4858 0.15 +0.8 5,764,617 - Psyr_4858 0.15 +0.7 5,764,617 - Psyr_4858 0.15 -0.3 5,764,617 - Psyr_4858 0.15 +2.4 5,764,617 - Psyr_4858 0.15 -0.1 5,764,617 - Psyr_4858 0.15 +0.6 5,764,617 - Psyr_4858 0.15 +1.3 5,764,617 - Psyr_4858 0.15 +0.5 5,764,617 - Psyr_4858 0.15 -0.4 5,764,667 + Psyr_4858 0.17 -1.5 5,764,667 + Psyr_4858 0.17 -1.2 5,764,667 + Psyr_4858 0.17 +1.8 5,764,667 + Psyr_4858 0.17 -1.0 5,764,668 - Psyr_4858 0.17 -0.9 5,764,688 + Psyr_4858 0.18 -0.6 5,764,781 + Psyr_4858 0.21 +0.3 5,764,832 + Psyr_4858 0.24 -1.5 5,764,832 + Psyr_4858 0.24 -0.8 5,764,832 + Psyr_4858 0.24 +0.4 5,764,832 + Psyr_4858 0.24 +1.1 5,764,832 + Psyr_4858 0.24 +0.3 5,764,832 + Psyr_4858 0.24 -1.1 5,764,832 + Psyr_4858 0.24 +1.1 5,764,833 - Psyr_4858 0.24 -2.6 5,764,833 - Psyr_4858 0.24 -0.7 5,764,833 - Psyr_4858 0.24 -0.0 5,764,833 - Psyr_4858 0.24 +1.2 5,764,833 - Psyr_4858 0.24 -0.5 5,764,859 + Psyr_4858 0.25 -0.5 5,764,859 + Psyr_4858 0.25 +0.4 5,764,859 + Psyr_4858 0.25 +0.7 5,764,859 + Psyr_4858 0.25 +0.1 5,764,860 - Psyr_4858 0.25 +1.3 5,764,860 - Psyr_4858 0.25 -0.6
Or see this region's nucleotide sequence