Experiment: KB with Fusaric 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4828 and Psyr_4829 are separated by 113 nucleotides Psyr_4829 and Psyr_4830 are separated by 73 nucleotides Psyr_4830 and Psyr_4831 overlap by 4 nucleotides
Psyr_4828: Psyr_4828 - urocanate hydratase, at 5,730,019 to 5,731,716
_4828
Psyr_4829: Psyr_4829 - Substrate-binding region of ABC-type glycine betaine transport system, at 5,731,830 to 5,732,798
_4829
Psyr_4830: Psyr_4830 - Binding-protein-dependent transport systems inner membrane component, at 5,732,872 to 5,733,723
_4830
Psyr_4831: Psyr_4831 - ABC transporter, at 5,733,720 to 5,734,550
_4831
Position (kb) 5731
5732
5733 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5730.862 kb on + strand, within Psyr_4828 at 5731.020 kb on + strand, within Psyr_4828 at 5731.020 kb on + strand, within Psyr_4828 at 5731.021 kb on - strand, within Psyr_4828 at 5731.021 kb on - strand, within Psyr_4828 at 5731.087 kb on + strand, within Psyr_4828 at 5731.087 kb on + strand, within Psyr_4828 at 5731.087 kb on + strand, within Psyr_4828 at 5731.087 kb on + strand, within Psyr_4828 at 5731.087 kb on + strand, within Psyr_4828 at 5731.087 kb on + strand, within Psyr_4828 at 5731.087 kb on + strand, within Psyr_4828 at 5731.087 kb on + strand, within Psyr_4828 at 5731.087 kb on + strand, within Psyr_4828 at 5731.088 kb on - strand, within Psyr_4828 at 5731.088 kb on - strand, within Psyr_4828 at 5731.088 kb on - strand, within Psyr_4828 at 5731.088 kb on - strand, within Psyr_4828 at 5731.088 kb on - strand, within Psyr_4828 at 5731.088 kb on - strand, within Psyr_4828 at 5731.162 kb on + strand, within Psyr_4828 at 5731.162 kb on + strand, within Psyr_4828 at 5731.162 kb on + strand, within Psyr_4828 at 5731.162 kb on + strand, within Psyr_4828 at 5731.162 kb on + strand, within Psyr_4828 at 5731.162 kb on + strand, within Psyr_4828 at 5731.163 kb on - strand, within Psyr_4828 at 5731.163 kb on - strand, within Psyr_4828 at 5731.163 kb on - strand, within Psyr_4828 at 5731.163 kb on - strand, within Psyr_4828 at 5731.163 kb on - strand, within Psyr_4828 at 5731.163 kb on - strand, within Psyr_4828 at 5731.163 kb on - strand, within Psyr_4828 at 5731.163 kb on - strand, within Psyr_4828 at 5731.163 kb on - strand, within Psyr_4828 at 5731.163 kb on - strand, within Psyr_4828 at 5731.163 kb on - strand, within Psyr_4828 at 5731.269 kb on + strand, within Psyr_4828 at 5731.654 kb on + strand at 5731.666 kb on - strand at 5731.785 kb on + strand at 5731.785 kb on + strand at 5731.786 kb on - strand at 5731.786 kb on - strand at 5731.786 kb on - strand at 5731.809 kb on + strand at 5731.810 kb on - strand at 5731.817 kb on - strand at 5731.817 kb on - strand at 5731.836 kb on - strand at 5731.949 kb on + strand, within Psyr_4829 at 5731.950 kb on - strand, within Psyr_4829 at 5731.981 kb on + strand, within Psyr_4829 at 5731.981 kb on + strand, within Psyr_4829 at 5731.982 kb on - strand, within Psyr_4829 at 5731.982 kb on - strand, within Psyr_4829 at 5731.982 kb on - strand, within Psyr_4829 at 5731.982 kb on - strand, within Psyr_4829 at 5731.982 kb on - strand, within Psyr_4829 at 5731.982 kb on - strand, within Psyr_4829 at 5732.188 kb on + strand, within Psyr_4829 at 5732.190 kb on + strand, within Psyr_4829 at 5732.191 kb on - strand, within Psyr_4829 at 5732.191 kb on - strand, within Psyr_4829 at 5732.328 kb on + strand, within Psyr_4829 at 5732.328 kb on + strand, within Psyr_4829 at 5732.328 kb on + strand, within Psyr_4829 at 5732.329 kb on - strand, within Psyr_4829 at 5732.329 kb on - strand, within Psyr_4829 at 5732.329 kb on - strand, within Psyr_4829 at 5732.329 kb on - strand, within Psyr_4829 at 5732.329 kb on - strand, within Psyr_4829 at 5732.403 kb on + strand, within Psyr_4829 at 5732.403 kb on + strand, within Psyr_4829 at 5732.403 kb on + strand, within Psyr_4829 at 5732.404 kb on - strand, within Psyr_4829 at 5732.404 kb on - strand, within Psyr_4829 at 5732.404 kb on - strand, within Psyr_4829 at 5732.404 kb on - strand, within Psyr_4829 at 5732.404 kb on - strand, within Psyr_4829 at 5732.404 kb on - strand, within Psyr_4829 at 5732.460 kb on + strand, within Psyr_4829 at 5732.460 kb on + strand, within Psyr_4829 at 5732.460 kb on + strand, within Psyr_4829 at 5732.460 kb on + strand, within Psyr_4829 at 5732.460 kb on + strand, within Psyr_4829 at 5732.487 kb on + strand, within Psyr_4829 at 5732.487 kb on + strand, within Psyr_4829 at 5732.487 kb on + strand, within Psyr_4829 at 5732.487 kb on + strand, within Psyr_4829 at 5732.487 kb on + strand, within Psyr_4829 at 5732.488 kb on - strand, within Psyr_4829 at 5732.488 kb on - strand, within Psyr_4829 at 5732.488 kb on - strand, within Psyr_4829 at 5732.488 kb on - strand, within Psyr_4829 at 5732.488 kb on - strand, within Psyr_4829 at 5732.489 kb on - strand, within Psyr_4829 at 5732.490 kb on + strand, within Psyr_4829 at 5732.490 kb on + strand, within Psyr_4829 at 5732.490 kb on + strand, within Psyr_4829 at 5732.491 kb on - strand, within Psyr_4829 at 5732.491 kb on - strand, within Psyr_4829 at 5732.491 kb on - strand, within Psyr_4829 at 5732.491 kb on - strand, within Psyr_4829 at 5732.491 kb on - strand, within Psyr_4829 at 5732.796 kb on + strand at 5732.871 kb on + strand at 5732.871 kb on + strand at 5732.871 kb on + strand at 5732.871 kb on + strand at 5732.871 kb on + strand at 5732.872 kb on - strand at 5732.872 kb on - strand at 5732.945 kb on - strand at 5732.982 kb on - strand, within Psyr_4830 at 5733.296 kb on - strand, within Psyr_4830 at 5733.296 kb on - strand, within Psyr_4830 at 5733.361 kb on + strand, within Psyr_4830 at 5733.361 kb on + strand, within Psyr_4830
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Fusaric 250 ug/ml remove 5,730,862 + Psyr_4828 0.50 -0.2 5,731,020 + Psyr_4828 0.59 +0.4 5,731,020 + Psyr_4828 0.59 -0.9 5,731,021 - Psyr_4828 0.59 +1.8 5,731,021 - Psyr_4828 0.59 -1.2 5,731,087 + Psyr_4828 0.63 -0.2 5,731,087 + Psyr_4828 0.63 -0.3 5,731,087 + Psyr_4828 0.63 -2.8 5,731,087 + Psyr_4828 0.63 -1.5 5,731,087 + Psyr_4828 0.63 +0.5 5,731,087 + Psyr_4828 0.63 -0.6 5,731,087 + Psyr_4828 0.63 -1.3 5,731,087 + Psyr_4828 0.63 -0.2 5,731,087 + Psyr_4828 0.63 -0.6 5,731,088 - Psyr_4828 0.63 +1.1 5,731,088 - Psyr_4828 0.63 +0.8 5,731,088 - Psyr_4828 0.63 -0.2 5,731,088 - Psyr_4828 0.63 -0.1 5,731,088 - Psyr_4828 0.63 +1.3 5,731,088 - Psyr_4828 0.63 -0.7 5,731,162 + Psyr_4828 0.67 +0.1 5,731,162 + Psyr_4828 0.67 -0.6 5,731,162 + Psyr_4828 0.67 +0.6 5,731,162 + Psyr_4828 0.67 +0.4 5,731,162 + Psyr_4828 0.67 -2.9 5,731,162 + Psyr_4828 0.67 -2.3 5,731,163 - Psyr_4828 0.67 -0.2 5,731,163 - Psyr_4828 0.67 +0.3 5,731,163 - Psyr_4828 0.67 -0.6 5,731,163 - Psyr_4828 0.67 +0.1 5,731,163 - Psyr_4828 0.67 -0.3 5,731,163 - Psyr_4828 0.67 +1.1 5,731,163 - Psyr_4828 0.67 -0.3 5,731,163 - Psyr_4828 0.67 -0.9 5,731,163 - Psyr_4828 0.67 +0.1 5,731,163 - Psyr_4828 0.67 +1.0 5,731,163 - Psyr_4828 0.67 +1.8 5,731,269 + Psyr_4828 0.74 -0.9 5,731,654 + +0.4 5,731,666 - +0.8 5,731,785 + -1.3 5,731,785 + +0.1 5,731,786 - -2.4 5,731,786 - +1.1 5,731,786 - -0.1 5,731,809 + -2.0 5,731,810 - -1.3 5,731,817 - +1.8 5,731,817 - +1.4 5,731,836 - -1.2 5,731,949 + Psyr_4829 0.12 +0.4 5,731,950 - Psyr_4829 0.12 -0.3 5,731,981 + Psyr_4829 0.16 -1.1 5,731,981 + Psyr_4829 0.16 -0.2 5,731,982 - Psyr_4829 0.16 -1.0 5,731,982 - Psyr_4829 0.16 +1.3 5,731,982 - Psyr_4829 0.16 -0.2 5,731,982 - Psyr_4829 0.16 -0.5 5,731,982 - Psyr_4829 0.16 +0.2 5,731,982 - Psyr_4829 0.16 -1.1 5,732,188 + Psyr_4829 0.37 -0.3 5,732,190 + Psyr_4829 0.37 -1.6 5,732,191 - Psyr_4829 0.37 +0.1 5,732,191 - Psyr_4829 0.37 +1.2 5,732,328 + Psyr_4829 0.51 -0.5 5,732,328 + Psyr_4829 0.51 -1.9 5,732,328 + Psyr_4829 0.51 -0.3 5,732,329 - Psyr_4829 0.51 -0.8 5,732,329 - Psyr_4829 0.51 -1.1 5,732,329 - Psyr_4829 0.51 -0.8 5,732,329 - Psyr_4829 0.51 +0.0 5,732,329 - Psyr_4829 0.51 +0.2 5,732,403 + Psyr_4829 0.59 +0.0 5,732,403 + Psyr_4829 0.59 +0.3 5,732,403 + Psyr_4829 0.59 -1.0 5,732,404 - Psyr_4829 0.59 +1.1 5,732,404 - Psyr_4829 0.59 +0.3 5,732,404 - Psyr_4829 0.59 -0.2 5,732,404 - Psyr_4829 0.59 -0.0 5,732,404 - Psyr_4829 0.59 +0.2 5,732,404 - Psyr_4829 0.59 -0.1 5,732,460 + Psyr_4829 0.65 +0.7 5,732,460 + Psyr_4829 0.65 +1.8 5,732,460 + Psyr_4829 0.65 -0.3 5,732,460 + Psyr_4829 0.65 -1.0 5,732,460 + Psyr_4829 0.65 +0.4 5,732,487 + Psyr_4829 0.68 +1.4 5,732,487 + Psyr_4829 0.68 -0.3 5,732,487 + Psyr_4829 0.68 -1.0 5,732,487 + Psyr_4829 0.68 -1.4 5,732,487 + Psyr_4829 0.68 -2.6 5,732,488 - Psyr_4829 0.68 +1.1 5,732,488 - Psyr_4829 0.68 -0.3 5,732,488 - Psyr_4829 0.68 -1.1 5,732,488 - Psyr_4829 0.68 -0.7 5,732,488 - Psyr_4829 0.68 -1.4 5,732,489 - Psyr_4829 0.68 -0.2 5,732,490 + Psyr_4829 0.68 +0.7 5,732,490 + Psyr_4829 0.68 -0.1 5,732,490 + Psyr_4829 0.68 -0.3 5,732,491 - Psyr_4829 0.68 -0.8 5,732,491 - Psyr_4829 0.68 +1.2 5,732,491 - Psyr_4829 0.68 -0.9 5,732,491 - Psyr_4829 0.68 -0.1 5,732,491 - Psyr_4829 0.68 +0.6 5,732,796 + -1.2 5,732,871 + -0.4 5,732,871 + -0.9 5,732,871 + +1.2 5,732,871 + +0.5 5,732,871 + -0.1 5,732,872 - +0.9 5,732,872 - -1.2 5,732,945 - -1.2 5,732,982 - Psyr_4830 0.13 +1.1 5,733,296 - Psyr_4830 0.50 -0.4 5,733,296 - Psyr_4830 0.50 -0.3 5,733,361 + Psyr_4830 0.57 -1.0 5,733,361 + Psyr_4830 0.57 -3.3
Or see this region's nucleotide sequence