Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3994

Experiment: KB with Fusaric 250 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3993 and Psyr_3994 are separated by 69 nucleotidesPsyr_3994 and Psyr_3995 are separated by 6 nucleotides Psyr_3993: Psyr_3993 - Glycoside hydrolase, family 3, N-terminal:Glycoside hydrolase, family 3, C-terminal, at 4,751,671 to 4,753,932 _3993 Psyr_3994: Psyr_3994 - ATP-binding region, ATPase-like:Histidine kinase A, N-terminal, at 4,754,002 to 4,755,759 _3994 Psyr_3995: Psyr_3995 - Helix-turn-helix, Fis-type, at 4,755,766 to 4,757,100 _3995 Position (kb) 4754 4755 4756Strain fitness (log2 ratio) -2 -1 0 1 2at 4753.006 kb on + strand, within Psyr_3993at 4753.051 kb on + strand, within Psyr_3993at 4753.051 kb on + strand, within Psyr_3993at 4753.051 kb on + strand, within Psyr_3993at 4753.052 kb on - strand, within Psyr_3993at 4753.052 kb on - strand, within Psyr_3993at 4753.076 kb on + strand, within Psyr_3993at 4753.077 kb on - strand, within Psyr_3993at 4753.077 kb on - strand, within Psyr_3993at 4753.077 kb on - strand, within Psyr_3993at 4753.077 kb on - strand, within Psyr_3993at 4753.385 kb on + strand, within Psyr_3993at 4753.385 kb on + strand, within Psyr_3993at 4753.385 kb on + strand, within Psyr_3993at 4753.386 kb on - strand, within Psyr_3993at 4753.386 kb on - strand, within Psyr_3993at 4753.400 kb on - strand, within Psyr_3993at 4753.459 kb on + strand, within Psyr_3993at 4753.459 kb on + strand, within Psyr_3993at 4753.460 kb on - strand, within Psyr_3993at 4753.460 kb on - strand, within Psyr_3993at 4753.462 kb on + strand, within Psyr_3993at 4753.462 kb on + strand, within Psyr_3993at 4753.462 kb on + strand, within Psyr_3993at 4753.462 kb on + strand, within Psyr_3993at 4753.462 kb on + strand, within Psyr_3993at 4753.462 kb on + strand, within Psyr_3993at 4753.462 kb on + strand, within Psyr_3993at 4753.463 kb on - strand, within Psyr_3993at 4753.463 kb on - strand, within Psyr_3993at 4753.513 kb on + strand, within Psyr_3993at 4753.513 kb on + strand, within Psyr_3993at 4753.514 kb on - strand, within Psyr_3993at 4753.514 kb on - strand, within Psyr_3993at 4753.514 kb on - strand, within Psyr_3993at 4753.514 kb on - strand, within Psyr_3993at 4753.526 kb on - strand, within Psyr_3993at 4753.576 kb on + strand, within Psyr_3993at 4753.576 kb on + strand, within Psyr_3993at 4753.576 kb on + strand, within Psyr_3993at 4753.576 kb on + strand, within Psyr_3993at 4753.576 kb on + strand, within Psyr_3993at 4753.577 kb on - strand, within Psyr_3993at 4753.577 kb on - strand, within Psyr_3993at 4753.577 kb on - strand, within Psyr_3993at 4753.702 kb on + strand, within Psyr_3993at 4753.702 kb on + strand, within Psyr_3993at 4753.702 kb on + strand, within Psyr_3993at 4753.702 kb on + strand, within Psyr_3993at 4753.703 kb on - strand, within Psyr_3993at 4753.703 kb on - strand, within Psyr_3993at 4753.703 kb on - strand, within Psyr_3993at 4753.703 kb on - strand, within Psyr_3993at 4753.703 kb on - strand, within Psyr_3993at 4753.831 kb on + strandat 4753.832 kb on - strandat 4753.832 kb on - strandat 4753.832 kb on - strandat 4753.832 kb on - strandat 4753.832 kb on - strandat 4753.832 kb on - strandat 4753.931 kb on - strandat 4754.038 kb on + strandat 4754.038 kb on + strandat 4754.039 kb on - strandat 4754.152 kb on + strandat 4754.152 kb on + strandat 4754.152 kb on + strandat 4754.152 kb on + strandat 4754.153 kb on - strandat 4754.153 kb on - strandat 4754.153 kb on - strandat 4754.153 kb on - strandat 4754.153 kb on - strandat 4754.153 kb on - strandat 4754.153 kb on - strandat 4754.261 kb on + strand, within Psyr_3994at 4754.261 kb on + strand, within Psyr_3994at 4754.261 kb on + strand, within Psyr_3994at 4754.261 kb on + strand, within Psyr_3994at 4754.261 kb on + strand, within Psyr_3994at 4754.262 kb on - strand, within Psyr_3994at 4754.262 kb on - strand, within Psyr_3994at 4754.262 kb on - strand, within Psyr_3994at 4754.383 kb on + strand, within Psyr_3994at 4754.383 kb on + strand, within Psyr_3994at 4754.383 kb on + strand, within Psyr_3994at 4754.383 kb on + strand, within Psyr_3994at 4754.383 kb on + strand, within Psyr_3994at 4754.383 kb on + strand, within Psyr_3994at 4754.383 kb on + strand, within Psyr_3994at 4754.383 kb on + strand, within Psyr_3994at 4754.384 kb on - strand, within Psyr_3994at 4754.384 kb on - strandat 4754.384 kb on - strand, within Psyr_3994at 4754.384 kb on - strand, within Psyr_3994at 4754.384 kb on - strand, within Psyr_3994at 4754.384 kb on - strand, within Psyr_3994at 4754.384 kb on - strand, within Psyr_3994at 4754.384 kb on - strand, within Psyr_3994at 4754.384 kb on - strand, within Psyr_3994at 4754.384 kb on - strand, within Psyr_3994at 4754.384 kb on - strand, within Psyr_3994at 4754.384 kb on - strand, within Psyr_3994at 4754.384 kb on - strand, within Psyr_3994at 4754.384 kb on - strand, within Psyr_3994at 4754.384 kb on - strand, within Psyr_3994at 4754.384 kb on - strand, within Psyr_3994at 4754.399 kb on - strand, within Psyr_3994at 4754.399 kb on - strand, within Psyr_3994at 4754.399 kb on - strand, within Psyr_3994at 4754.399 kb on - strand, within Psyr_3994at 4754.399 kb on - strand, within Psyr_3994at 4754.399 kb on - strand, within Psyr_3994at 4754.414 kb on - strand, within Psyr_3994at 4754.414 kb on - strand, within Psyr_3994at 4754.414 kb on - strand, within Psyr_3994at 4754.414 kb on - strand, within Psyr_3994at 4754.514 kb on + strand, within Psyr_3994at 4754.726 kb on + strand, within Psyr_3994at 4754.726 kb on + strand, within Psyr_3994at 4754.727 kb on - strand, within Psyr_3994at 4754.727 kb on - strand, within Psyr_3994at 4754.727 kb on - strand, within Psyr_3994at 4754.727 kb on - strand, within Psyr_3994at 4754.815 kb on + strand, within Psyr_3994at 4754.815 kb on + strand, within Psyr_3994at 4754.815 kb on + strand, within Psyr_3994at 4754.942 kb on + strand, within Psyr_3994at 4754.942 kb on + strand, within Psyr_3994at 4755.243 kb on + strand, within Psyr_3994at 4755.243 kb on + strand, within Psyr_3994at 4755.243 kb on + strand, within Psyr_3994at 4755.243 kb on + strand, within Psyr_3994at 4755.243 kb on + strand, within Psyr_3994at 4755.244 kb on - strand, within Psyr_3994at 4755.244 kb on - strand, within Psyr_3994at 4755.244 kb on - strand, within Psyr_3994at 4755.244 kb on - strand, within Psyr_3994at 4755.244 kb on - strand, within Psyr_3994at 4755.450 kb on - strand, within Psyr_3994at 4755.659 kb on - strandat 4756.465 kb on + strand, within Psyr_3995at 4756.465 kb on + strand, within Psyr_3995at 4756.466 kb on - strand, within Psyr_3995at 4756.466 kb on - strand, within Psyr_3995at 4756.466 kb on - strand, within Psyr_3995at 4756.673 kb on - strand, within Psyr_3995

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Fusaric 250 ug/ml
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4,753,006 + Psyr_3993 0.59 -0.0
4,753,051 + Psyr_3993 0.61 +0.3
4,753,051 + Psyr_3993 0.61 -0.0
4,753,051 + Psyr_3993 0.61 +0.5
4,753,052 - Psyr_3993 0.61 +0.6
4,753,052 - Psyr_3993 0.61 -1.0
4,753,076 + Psyr_3993 0.62 -0.8
4,753,077 - Psyr_3993 0.62 +0.5
4,753,077 - Psyr_3993 0.62 +0.5
4,753,077 - Psyr_3993 0.62 -1.2
4,753,077 - Psyr_3993 0.62 +0.7
4,753,385 + Psyr_3993 0.76 -1.2
4,753,385 + Psyr_3993 0.76 -0.4
4,753,385 + Psyr_3993 0.76 +0.3
4,753,386 - Psyr_3993 0.76 +0.6
4,753,386 - Psyr_3993 0.76 +1.0
4,753,400 - Psyr_3993 0.76 +0.3
4,753,459 + Psyr_3993 0.79 +0.2
4,753,459 + Psyr_3993 0.79 -0.5
4,753,460 - Psyr_3993 0.79 +1.3
4,753,460 - Psyr_3993 0.79 -0.3
4,753,462 + Psyr_3993 0.79 +0.6
4,753,462 + Psyr_3993 0.79 +0.6
4,753,462 + Psyr_3993 0.79 -0.2
4,753,462 + Psyr_3993 0.79 -0.9
4,753,462 + Psyr_3993 0.79 +1.6
4,753,462 + Psyr_3993 0.79 -0.6
4,753,462 + Psyr_3993 0.79 +0.1
4,753,463 - Psyr_3993 0.79 +0.3
4,753,463 - Psyr_3993 0.79 +1.9
4,753,513 + Psyr_3993 0.81 -0.6
4,753,513 + Psyr_3993 0.81 -0.4
4,753,514 - Psyr_3993 0.81 -0.4
4,753,514 - Psyr_3993 0.81 +1.5
4,753,514 - Psyr_3993 0.81 +0.6
4,753,514 - Psyr_3993 0.81 -0.8
4,753,526 - Psyr_3993 0.82 +2.6
4,753,576 + Psyr_3993 0.84 +0.5
4,753,576 + Psyr_3993 0.84 -0.3
4,753,576 + Psyr_3993 0.84 -0.4
4,753,576 + Psyr_3993 0.84 +2.2
4,753,576 + Psyr_3993 0.84 -1.3
4,753,577 - Psyr_3993 0.84 +2.0
4,753,577 - Psyr_3993 0.84 +0.2
4,753,577 - Psyr_3993 0.84 -0.2
4,753,702 + Psyr_3993 0.90 -0.7
4,753,702 + Psyr_3993 0.90 -0.0
4,753,702 + Psyr_3993 0.90 +1.3
4,753,702 + Psyr_3993 0.90 +0.8
4,753,703 - Psyr_3993 0.90 -1.4
4,753,703 - Psyr_3993 0.90 -0.3
4,753,703 - Psyr_3993 0.90 +0.6
4,753,703 - Psyr_3993 0.90 -1.6
4,753,703 - Psyr_3993 0.90 -0.5
4,753,831 + -0.6
4,753,832 - +0.6
4,753,832 - -0.0
4,753,832 - -0.2
4,753,832 - -0.7
4,753,832 - +0.1
4,753,832 - +1.5
4,753,931 - -0.2
4,754,038 + -0.1
4,754,038 + -0.2
4,754,039 - -0.4
4,754,152 + +1.5
4,754,152 + -1.1
4,754,152 + -0.2
4,754,152 + -0.4
4,754,153 - -0.7
4,754,153 - -1.4
4,754,153 - -1.2
4,754,153 - +0.4
4,754,153 - -1.5
4,754,153 - -0.3
4,754,153 - -0.2
4,754,261 + Psyr_3994 0.15 -2.4
4,754,261 + Psyr_3994 0.15 -1.6
4,754,261 + Psyr_3994 0.15 +0.2
4,754,261 + Psyr_3994 0.15 +1.9
4,754,261 + Psyr_3994 0.15 -0.8
4,754,262 - Psyr_3994 0.15 +1.4
4,754,262 - Psyr_3994 0.15 +2.6
4,754,262 - Psyr_3994 0.15 -0.0
4,754,383 + Psyr_3994 0.22 +2.1
4,754,383 + Psyr_3994 0.22 +0.3
4,754,383 + Psyr_3994 0.22 -1.4
4,754,383 + Psyr_3994 0.22 +1.0
4,754,383 + Psyr_3994 0.22 +1.1
4,754,383 + Psyr_3994 0.22 +0.8
4,754,383 + Psyr_3994 0.22 -0.1
4,754,383 + Psyr_3994 0.22 +1.9
4,754,384 - Psyr_3994 0.22 +0.8
4,754,384 - -0.0
4,754,384 - Psyr_3994 0.22 +0.6
4,754,384 - Psyr_3994 0.22 +1.6
4,754,384 - Psyr_3994 0.22 -0.2
4,754,384 - Psyr_3994 0.22 +0.7
4,754,384 - Psyr_3994 0.22 +0.8
4,754,384 - Psyr_3994 0.22 +0.5
4,754,384 - Psyr_3994 0.22 +0.8
4,754,384 - Psyr_3994 0.22 -0.4
4,754,384 - Psyr_3994 0.22 -0.9
4,754,384 - Psyr_3994 0.22 -0.5
4,754,384 - Psyr_3994 0.22 -0.2
4,754,384 - Psyr_3994 0.22 -0.4
4,754,384 - Psyr_3994 0.22 -1.0
4,754,384 - Psyr_3994 0.22 +0.8
4,754,399 - Psyr_3994 0.23 -1.4
4,754,399 - Psyr_3994 0.23 -0.2
4,754,399 - Psyr_3994 0.23 -0.5
4,754,399 - Psyr_3994 0.23 +0.6
4,754,399 - Psyr_3994 0.23 +0.9
4,754,399 - Psyr_3994 0.23 -0.5
4,754,414 - Psyr_3994 0.23 +2.0
4,754,414 - Psyr_3994 0.23 -0.9
4,754,414 - Psyr_3994 0.23 -0.9
4,754,414 - Psyr_3994 0.23 -0.4
4,754,514 + Psyr_3994 0.29 +1.2
4,754,726 + Psyr_3994 0.41 -1.4
4,754,726 + Psyr_3994 0.41 +0.3
4,754,727 - Psyr_3994 0.41 +1.6
4,754,727 - Psyr_3994 0.41 +1.2
4,754,727 - Psyr_3994 0.41 -0.2
4,754,727 - Psyr_3994 0.41 +1.0
4,754,815 + Psyr_3994 0.46 -1.6
4,754,815 + Psyr_3994 0.46 -2.6
4,754,815 + Psyr_3994 0.46 +1.0
4,754,942 + Psyr_3994 0.53 +0.0
4,754,942 + Psyr_3994 0.53 +1.2
4,755,243 + Psyr_3994 0.71 -0.3
4,755,243 + Psyr_3994 0.71 +1.6
4,755,243 + Psyr_3994 0.71 -0.0
4,755,243 + Psyr_3994 0.71 +0.4
4,755,243 + Psyr_3994 0.71 +0.6
4,755,244 - Psyr_3994 0.71 +0.9
4,755,244 - Psyr_3994 0.71 -0.6
4,755,244 - Psyr_3994 0.71 -0.5
4,755,244 - Psyr_3994 0.71 -0.8
4,755,244 - Psyr_3994 0.71 -0.3
4,755,450 - Psyr_3994 0.82 +0.2
4,755,659 - -0.5
4,756,465 + Psyr_3995 0.52 +0.9
4,756,465 + Psyr_3995 0.52 -0.4
4,756,466 - Psyr_3995 0.52 -0.6
4,756,466 - Psyr_3995 0.52 +0.2
4,756,466 - Psyr_3995 0.52 +0.6
4,756,673 - Psyr_3995 0.68 +2.6

Or see this region's nucleotide sequence