Experiment: KB with Fusaric 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3787 and Psyr_3788 are separated by 144 nucleotides Psyr_3788 and Psyr_3789 are separated by 69 nucleotides Psyr_3789 and Psyr_3790 are separated by 608 nucleotides
Psyr_3787: Psyr_3787 - conserved hypothetical protein, at 4,503,341 to 4,503,907
_3787
Psyr_3788: Psyr_3788 - Conserved hypothetical protein 2001, at 4,504,052 to 4,504,780
_3788
Psyr_3789: Psyr_3789 - lipoprotein, putative, at 4,504,850 to 4,505,713
_3789
Psyr_3790: Psyr_3790 - conserved hypothetical protein, at 4,506,322 to 4,506,624
_3790
Position (kb) 4504
4505
4506 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4503.970 kb on + strand at 4503.971 kb on - strand at 4504.069 kb on - strand at 4504.069 kb on - strand at 4504.069 kb on - strand at 4504.262 kb on + strand, within Psyr_3788 at 4504.325 kb on + strand, within Psyr_3788 at 4504.325 kb on + strand, within Psyr_3788 at 4504.325 kb on + strand, within Psyr_3788 at 4504.325 kb on + strand, within Psyr_3788 at 4504.325 kb on + strand, within Psyr_3788 at 4504.325 kb on + strand, within Psyr_3788 at 4504.325 kb on + strand, within Psyr_3788 at 4504.325 kb on + strand, within Psyr_3788 at 4504.326 kb on - strand, within Psyr_3788 at 4504.326 kb on - strand, within Psyr_3788 at 4504.326 kb on - strand, within Psyr_3788 at 4504.326 kb on - strand, within Psyr_3788 at 4504.326 kb on - strand, within Psyr_3788 at 4504.365 kb on - strand, within Psyr_3788 at 4504.365 kb on - strand, within Psyr_3788 at 4504.392 kb on - strand, within Psyr_3788 at 4504.427 kb on + strand, within Psyr_3788 at 4504.427 kb on + strand, within Psyr_3788 at 4504.427 kb on + strand, within Psyr_3788 at 4504.427 kb on + strand, within Psyr_3788 at 4504.427 kb on + strand, within Psyr_3788 at 4504.428 kb on - strand, within Psyr_3788 at 4504.428 kb on - strand, within Psyr_3788 at 4504.428 kb on - strand, within Psyr_3788 at 4504.428 kb on - strand, within Psyr_3788 at 4504.428 kb on - strand, within Psyr_3788 at 4504.428 kb on - strand, within Psyr_3788 at 4504.428 kb on - strand, within Psyr_3788 at 4504.676 kb on + strand, within Psyr_3788 at 4504.676 kb on + strand, within Psyr_3788 at 4504.676 kb on + strand, within Psyr_3788 at 4504.676 kb on + strand, within Psyr_3788 at 4504.676 kb on + strand, within Psyr_3788 at 4504.676 kb on + strand, within Psyr_3788 at 4504.676 kb on + strand, within Psyr_3788 at 4504.676 kb on + strand, within Psyr_3788 at 4504.676 kb on + strand, within Psyr_3788 at 4504.676 kb on + strand, within Psyr_3788 at 4504.676 kb on + strand, within Psyr_3788 at 4504.676 kb on + strand, within Psyr_3788 at 4504.676 kb on + strand, within Psyr_3788 at 4504.676 kb on + strand, within Psyr_3788 at 4504.677 kb on - strand, within Psyr_3788 at 4504.677 kb on - strand, within Psyr_3788 at 4504.677 kb on - strand, within Psyr_3788 at 4504.677 kb on - strand, within Psyr_3788 at 4504.677 kb on - strand, within Psyr_3788 at 4504.677 kb on - strand, within Psyr_3788 at 4504.677 kb on - strand, within Psyr_3788 at 4504.715 kb on + strand at 4504.716 kb on - strand at 4504.757 kb on - strand at 4504.811 kb on - strand at 4504.860 kb on + strand at 4505.064 kb on - strand, within Psyr_3789 at 4505.118 kb on - strand, within Psyr_3789 at 4505.118 kb on - strand, within Psyr_3789 at 4505.137 kb on + strand, within Psyr_3789 at 4505.282 kb on + strand, within Psyr_3789 at 4505.282 kb on + strand, within Psyr_3789 at 4505.283 kb on - strand, within Psyr_3789 at 4505.283 kb on - strand, within Psyr_3789 at 4505.283 kb on - strand, within Psyr_3789 at 4505.329 kb on + strand, within Psyr_3789 at 4505.444 kb on - strand, within Psyr_3789 at 4505.711 kb on + strand at 4505.712 kb on - strand at 4505.712 kb on - strand at 4505.712 kb on - strand at 4505.737 kb on + strand at 4505.737 kb on + strand at 4505.738 kb on - strand at 4505.738 kb on - strand at 4505.797 kb on - strand at 4505.877 kb on + strand at 4505.878 kb on - strand at 4506.048 kb on + strand at 4506.048 kb on + strand at 4506.048 kb on + strand at 4506.048 kb on + strand at 4506.048 kb on + strand at 4506.048 kb on + strand at 4506.048 kb on + strand at 4506.048 kb on + strand at 4506.048 kb on + strand at 4506.048 kb on + strand at 4506.048 kb on + strand at 4506.048 kb on + strand at 4506.048 kb on + strand at 4506.048 kb on + strand at 4506.048 kb on + strand at 4506.048 kb on + strand at 4506.049 kb on - strand at 4506.049 kb on - strand at 4506.049 kb on - strand at 4506.049 kb on - strand at 4506.049 kb on - strand at 4506.049 kb on - strand at 4506.049 kb on - strand at 4506.049 kb on - strand at 4506.049 kb on - strand at 4506.049 kb on - strand at 4506.049 kb on - strand at 4506.049 kb on - strand at 4506.049 kb on - strand at 4506.054 kb on + strand at 4506.204 kb on + strand at 4506.204 kb on + strand at 4506.204 kb on + strand at 4506.204 kb on + strand at 4506.204 kb on + strand at 4506.204 kb on + strand at 4506.204 kb on + strand at 4506.204 kb on + strand at 4506.205 kb on - strand at 4506.205 kb on - strand at 4506.205 kb on - strand at 4506.205 kb on - strand at 4506.210 kb on + strand at 4506.295 kb on - strand at 4506.295 kb on - strand at 4506.324 kb on - strand at 4506.324 kb on - strand at 4506.476 kb on + strand, within Psyr_3790 at 4506.476 kb on + strand, within Psyr_3790 at 4506.476 kb on + strand, within Psyr_3790 at 4506.476 kb on + strand, within Psyr_3790 at 4506.476 kb on + strand, within Psyr_3790 at 4506.476 kb on + strand, within Psyr_3790 at 4506.477 kb on - strand, within Psyr_3790 at 4506.477 kb on - strand, within Psyr_3790 at 4506.477 kb on - strand, within Psyr_3790 at 4506.477 kb on - strand, within Psyr_3790 at 4506.477 kb on - strand, within Psyr_3790 at 4506.521 kb on + strand, within Psyr_3790 at 4506.521 kb on + strand, within Psyr_3790 at 4506.522 kb on - strand, within Psyr_3790 at 4506.617 kb on + strand at 4506.617 kb on + strand at 4506.617 kb on + strand at 4506.617 kb on + strand at 4506.618 kb on - strand at 4506.618 kb on - strand at 4506.628 kb on + strand at 4506.628 kb on + strand at 4506.628 kb on + strand at 4506.628 kb on + strand at 4506.628 kb on + strand at 4506.628 kb on + strand at 4506.628 kb on + strand at 4506.629 kb on - strand at 4506.629 kb on - strand at 4506.629 kb on - strand at 4506.629 kb on - strand at 4506.630 kb on + strand at 4506.630 kb on + strand at 4506.630 kb on + strand at 4506.631 kb on - strand at 4506.631 kb on - strand at 4506.631 kb on - strand at 4506.631 kb on - strand at 4506.631 kb on - strand at 4506.631 kb on - strand at 4506.631 kb on - strand at 4506.631 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Fusaric 250 ug/ml remove 4,503,970 + -0.6 4,503,971 - -0.1 4,504,069 - +0.7 4,504,069 - -1.3 4,504,069 - -1.3 4,504,262 + Psyr_3788 0.29 +0.8 4,504,325 + Psyr_3788 0.37 -0.5 4,504,325 + Psyr_3788 0.37 +0.2 4,504,325 + Psyr_3788 0.37 -1.1 4,504,325 + Psyr_3788 0.37 +0.5 4,504,325 + Psyr_3788 0.37 -0.3 4,504,325 + Psyr_3788 0.37 +0.3 4,504,325 + Psyr_3788 0.37 -1.3 4,504,325 + Psyr_3788 0.37 -0.5 4,504,326 - Psyr_3788 0.38 +0.7 4,504,326 - Psyr_3788 0.38 +0.0 4,504,326 - Psyr_3788 0.38 -0.5 4,504,326 - Psyr_3788 0.38 +1.3 4,504,326 - Psyr_3788 0.38 +0.5 4,504,365 - Psyr_3788 0.43 -0.0 4,504,365 - Psyr_3788 0.43 +0.2 4,504,392 - Psyr_3788 0.47 +0.3 4,504,427 + Psyr_3788 0.51 +0.7 4,504,427 + Psyr_3788 0.51 +0.9 4,504,427 + Psyr_3788 0.51 +1.8 4,504,427 + Psyr_3788 0.51 -2.6 4,504,427 + Psyr_3788 0.51 -0.2 4,504,428 - Psyr_3788 0.52 -1.1 4,504,428 - Psyr_3788 0.52 -1.0 4,504,428 - Psyr_3788 0.52 +2.1 4,504,428 - Psyr_3788 0.52 +0.3 4,504,428 - Psyr_3788 0.52 -1.0 4,504,428 - Psyr_3788 0.52 -0.3 4,504,428 - Psyr_3788 0.52 -0.2 4,504,676 + Psyr_3788 0.86 -0.5 4,504,676 + Psyr_3788 0.86 -1.5 4,504,676 + Psyr_3788 0.86 -3.3 4,504,676 + Psyr_3788 0.86 -2.6 4,504,676 + Psyr_3788 0.86 -0.4 4,504,676 + Psyr_3788 0.86 -0.9 4,504,676 + Psyr_3788 0.86 -3.1 4,504,676 + Psyr_3788 0.86 -1.1 4,504,676 + Psyr_3788 0.86 +0.5 4,504,676 + Psyr_3788 0.86 -2.8 4,504,676 + Psyr_3788 0.86 -0.3 4,504,676 + Psyr_3788 0.86 -0.5 4,504,676 + Psyr_3788 0.86 +1.4 4,504,676 + Psyr_3788 0.86 -0.8 4,504,677 - Psyr_3788 0.86 -0.6 4,504,677 - Psyr_3788 0.86 -1.3 4,504,677 - Psyr_3788 0.86 +0.3 4,504,677 - Psyr_3788 0.86 -1.1 4,504,677 - Psyr_3788 0.86 -0.8 4,504,677 - Psyr_3788 0.86 -0.3 4,504,677 - Psyr_3788 0.86 -2.5 4,504,715 + -1.1 4,504,716 - -0.5 4,504,757 - -1.9 4,504,811 - -0.5 4,504,860 + +2.8 4,505,064 - Psyr_3789 0.25 +0.9 4,505,118 - Psyr_3789 0.31 +0.3 4,505,118 - Psyr_3789 0.31 +0.2 4,505,137 + Psyr_3789 0.33 -0.3 4,505,282 + Psyr_3789 0.50 -1.0 4,505,282 + Psyr_3789 0.50 -1.5 4,505,283 - Psyr_3789 0.50 -0.3 4,505,283 - Psyr_3789 0.50 +1.1 4,505,283 - Psyr_3789 0.50 -0.2 4,505,329 + Psyr_3789 0.55 -1.3 4,505,444 - Psyr_3789 0.69 +1.1 4,505,711 + +2.1 4,505,712 - -0.1 4,505,712 - +1.8 4,505,712 - +1.1 4,505,737 + -3.6 4,505,737 + +0.7 4,505,738 - -0.2 4,505,738 - -1.8 4,505,797 - +0.3 4,505,877 + +0.2 4,505,878 - +0.3 4,506,048 + +1.3 4,506,048 + -0.7 4,506,048 + -0.4 4,506,048 + +0.4 4,506,048 + -0.1 4,506,048 + -0.3 4,506,048 + -1.9 4,506,048 + +0.2 4,506,048 + -1.1 4,506,048 + -3.2 4,506,048 + -0.8 4,506,048 + -0.1 4,506,048 + -0.9 4,506,048 + -0.2 4,506,048 + +0.1 4,506,048 + -0.0 4,506,049 - -0.4 4,506,049 - +0.8 4,506,049 - +1.0 4,506,049 - +0.6 4,506,049 - +1.3 4,506,049 - -0.5 4,506,049 - -0.2 4,506,049 - +0.5 4,506,049 - +0.2 4,506,049 - +1.4 4,506,049 - +0.2 4,506,049 - -0.8 4,506,049 - +0.9 4,506,054 + +0.2 4,506,204 + +0.4 4,506,204 + -1.5 4,506,204 + +2.3 4,506,204 + +0.5 4,506,204 + -0.5 4,506,204 + -0.9 4,506,204 + +0.3 4,506,204 + -1.6 4,506,205 - -0.3 4,506,205 - +2.3 4,506,205 - +0.7 4,506,205 - +0.6 4,506,210 + -1.3 4,506,295 - +0.7 4,506,295 - +0.4 4,506,324 - +0.5 4,506,324 - -0.7 4,506,476 + Psyr_3790 0.51 +1.7 4,506,476 + Psyr_3790 0.51 +1.3 4,506,476 + Psyr_3790 0.51 -0.9 4,506,476 + Psyr_3790 0.51 -1.2 4,506,476 + Psyr_3790 0.51 +0.3 4,506,476 + Psyr_3790 0.51 +0.9 4,506,477 - Psyr_3790 0.51 +0.1 4,506,477 - Psyr_3790 0.51 -0.4 4,506,477 - Psyr_3790 0.51 +0.1 4,506,477 - Psyr_3790 0.51 +0.2 4,506,477 - Psyr_3790 0.51 +0.5 4,506,521 + Psyr_3790 0.66 -1.6 4,506,521 + Psyr_3790 0.66 -0.8 4,506,522 - Psyr_3790 0.66 +0.6 4,506,617 + +0.9 4,506,617 + +1.4 4,506,617 + +0.1 4,506,617 + +0.0 4,506,618 - +1.3 4,506,618 - +2.1 4,506,628 + -1.2 4,506,628 + -1.6 4,506,628 + +0.3 4,506,628 + -0.5 4,506,628 + +0.1 4,506,628 + -0.3 4,506,628 + +0.4 4,506,629 - +1.0 4,506,629 - -0.2 4,506,629 - -0.1 4,506,629 - -0.2 4,506,630 + -0.2 4,506,630 + +0.3 4,506,630 + +0.2 4,506,631 - -1.1 4,506,631 - -0.5 4,506,631 - +0.8 4,506,631 - -0.5 4,506,631 - -0.6 4,506,631 - -1.8 4,506,631 - -0.3 4,506,631 - -0.3
Or see this region's nucleotide sequence