Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3760

Experiment: KB with Fusaric 250 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3759 and Psyr_3760 overlap by 8 nucleotidesPsyr_3760 and Psyr_3761 are separated by 134 nucleotidesPsyr_3761 and Psyr_3762 are separated by 203 nucleotides Psyr_3759: Psyr_3759 - conserved hypothetical protein, at 4,476,742 to 4,478,040 _3759 Psyr_3760: Psyr_3760 - VacJ-like lipoprotein, at 4,478,033 to 4,478,845 _3760 Psyr_3761: Psyr_3761 - conserved hypothetical protein, at 4,478,980 to 4,479,570 _3761 Psyr_3762: Psyr_3762 - General substrate transporter:Major facilitator superfamily, at 4,479,774 to 4,480,976 _3762 Position (kb) 4478 4479Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4477.069 kb on + strand, within Psyr_3759at 4477.070 kb on - strand, within Psyr_3759at 4477.070 kb on - strand, within Psyr_3759at 4477.070 kb on - strand, within Psyr_3759at 4477.071 kb on + strand, within Psyr_3759at 4477.071 kb on + strand, within Psyr_3759at 4477.105 kb on + strand, within Psyr_3759at 4477.106 kb on - strand, within Psyr_3759at 4477.109 kb on - strand, within Psyr_3759at 4477.153 kb on + strand, within Psyr_3759at 4477.154 kb on - strand, within Psyr_3759at 4477.276 kb on + strand, within Psyr_3759at 4477.276 kb on + strand, within Psyr_3759at 4477.277 kb on - strand, within Psyr_3759at 4477.277 kb on - strand, within Psyr_3759at 4477.279 kb on + strand, within Psyr_3759at 4477.279 kb on + strand, within Psyr_3759at 4477.279 kb on + strand, within Psyr_3759at 4477.279 kb on + strand, within Psyr_3759at 4477.396 kb on + strand, within Psyr_3759at 4477.396 kb on + strand, within Psyr_3759at 4477.396 kb on + strand, within Psyr_3759at 4477.397 kb on - strand, within Psyr_3759at 4477.397 kb on - strand, within Psyr_3759at 4477.446 kb on + strandat 4477.468 kb on + strand, within Psyr_3759at 4477.468 kb on + strand, within Psyr_3759at 4477.468 kb on + strand, within Psyr_3759at 4477.468 kb on + strand, within Psyr_3759at 4477.469 kb on - strand, within Psyr_3759at 4477.469 kb on - strand, within Psyr_3759at 4477.469 kb on - strand, within Psyr_3759at 4477.516 kb on + strand, within Psyr_3759at 4477.516 kb on + strand, within Psyr_3759at 4477.517 kb on - strand, within Psyr_3759at 4477.517 kb on - strand, within Psyr_3759at 4477.603 kb on - strand, within Psyr_3759at 4477.776 kb on + strand, within Psyr_3759at 4477.776 kb on + strand, within Psyr_3759at 4477.776 kb on + strand, within Psyr_3759at 4477.776 kb on + strand, within Psyr_3759at 4477.776 kb on + strand, within Psyr_3759at 4477.777 kb on - strand, within Psyr_3759at 4477.777 kb on - strand, within Psyr_3759at 4477.777 kb on - strand, within Psyr_3759at 4477.777 kb on - strand, within Psyr_3759at 4477.837 kb on + strand, within Psyr_3759at 4477.838 kb on - strand, within Psyr_3759at 4477.852 kb on + strand, within Psyr_3759at 4477.852 kb on + strand, within Psyr_3759at 4477.852 kb on + strand, within Psyr_3759at 4477.963 kb on + strandat 4477.970 kb on - strandat 4477.992 kb on + strandat 4477.992 kb on + strandat 4477.992 kb on + strandat 4477.992 kb on + strandat 4477.992 kb on + strandat 4477.993 kb on - strandat 4477.993 kb on - strandat 4477.996 kb on + strandat 4478.049 kb on + strandat 4478.246 kb on + strandat 4478.246 kb on + strand, within Psyr_3760at 4478.246 kb on + strand, within Psyr_3760at 4478.247 kb on - strand, within Psyr_3760at 4478.247 kb on - strand, within Psyr_3760at 4478.279 kb on + strand, within Psyr_3760at 4478.292 kb on - strand, within Psyr_3760at 4478.310 kb on + strand, within Psyr_3760at 4478.311 kb on - strand, within Psyr_3760at 4478.339 kb on + strand, within Psyr_3760at 4478.339 kb on + strand, within Psyr_3760at 4478.340 kb on - strand, within Psyr_3760at 4478.567 kb on + strand, within Psyr_3760at 4478.567 kb on + strand, within Psyr_3760at 4478.567 kb on + strand, within Psyr_3760at 4478.567 kb on + strand, within Psyr_3760at 4478.589 kb on - strand, within Psyr_3760at 4478.651 kb on + strand, within Psyr_3760at 4478.744 kb on + strand, within Psyr_3760at 4478.744 kb on + strand, within Psyr_3760at 4478.744 kb on + strand, within Psyr_3760at 4478.810 kb on + strandat 4478.811 kb on - strandat 4478.849 kb on + strandat 4478.858 kb on - strandat 4478.911 kb on + strandat 4478.912 kb on - strandat 4479.015 kb on + strandat 4479.016 kb on - strandat 4479.152 kb on - strand, within Psyr_3761at 4479.155 kb on + strand, within Psyr_3761at 4479.155 kb on + strand, within Psyr_3761at 4479.155 kb on + strand, within Psyr_3761at 4479.155 kb on + strand, within Psyr_3761at 4479.155 kb on + strand, within Psyr_3761at 4479.155 kb on + strand, within Psyr_3761at 4479.155 kb on + strand, within Psyr_3761at 4479.155 kb on + strand, within Psyr_3761at 4479.155 kb on + strand, within Psyr_3761at 4479.155 kb on + strand, within Psyr_3761at 4479.156 kb on - strand, within Psyr_3761at 4479.156 kb on - strand, within Psyr_3761at 4479.156 kb on - strand, within Psyr_3761at 4479.156 kb on - strand, within Psyr_3761at 4479.156 kb on - strand, within Psyr_3761at 4479.156 kb on - strand, within Psyr_3761at 4479.156 kb on - strand, within Psyr_3761at 4479.156 kb on - strand, within Psyr_3761at 4479.156 kb on - strand, within Psyr_3761at 4479.156 kb on - strand, within Psyr_3761at 4479.218 kb on - strand, within Psyr_3761at 4479.218 kb on - strand, within Psyr_3761at 4479.305 kb on + strand, within Psyr_3761at 4479.721 kb on - strandat 4479.773 kb on + strandat 4479.773 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Fusaric 250 ug/ml
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4,477,069 + Psyr_3759 0.25 -1.4
4,477,070 - Psyr_3759 0.25 -0.3
4,477,070 - Psyr_3759 0.25 -0.1
4,477,070 - Psyr_3759 0.25 -1.1
4,477,071 + Psyr_3759 0.25 -1.8
4,477,071 + Psyr_3759 0.25 -2.4
4,477,105 + Psyr_3759 0.28 -2.5
4,477,106 - Psyr_3759 0.28 -0.5
4,477,109 - Psyr_3759 0.28 -0.1
4,477,153 + Psyr_3759 0.32 -1.5
4,477,154 - Psyr_3759 0.32 -3.2
4,477,276 + Psyr_3759 0.41 -0.9
4,477,276 + Psyr_3759 0.41 -2.6
4,477,277 - Psyr_3759 0.41 -1.2
4,477,277 - Psyr_3759 0.41 -0.0
4,477,279 + Psyr_3759 0.41 -2.8
4,477,279 + Psyr_3759 0.41 -3.1
4,477,279 + Psyr_3759 0.41 -2.9
4,477,279 + Psyr_3759 0.41 -2.5
4,477,396 + Psyr_3759 0.50 -0.9
4,477,396 + Psyr_3759 0.50 -1.1
4,477,396 + Psyr_3759 0.50 -4.1
4,477,397 - Psyr_3759 0.50 +0.5
4,477,397 - Psyr_3759 0.50 -2.0
4,477,446 + -2.5
4,477,468 + Psyr_3759 0.56 -0.2
4,477,468 + Psyr_3759 0.56 +0.5
4,477,468 + Psyr_3759 0.56 -0.6
4,477,468 + Psyr_3759 0.56 -0.6
4,477,469 - Psyr_3759 0.56 -0.7
4,477,469 - Psyr_3759 0.56 -2.4
4,477,469 - Psyr_3759 0.56 -0.4
4,477,516 + Psyr_3759 0.60 -0.6
4,477,516 + Psyr_3759 0.60 -1.1
4,477,517 - Psyr_3759 0.60 -1.3
4,477,517 - Psyr_3759 0.60 -2.1
4,477,603 - Psyr_3759 0.66 -0.5
4,477,776 + Psyr_3759 0.80 -0.2
4,477,776 + Psyr_3759 0.80 -1.5
4,477,776 + Psyr_3759 0.80 -1.3
4,477,776 + Psyr_3759 0.80 -0.3
4,477,776 + Psyr_3759 0.80 -0.2
4,477,777 - Psyr_3759 0.80 +2.1
4,477,777 - Psyr_3759 0.80 -1.5
4,477,777 - Psyr_3759 0.80 -0.4
4,477,777 - Psyr_3759 0.80 +1.1
4,477,837 + Psyr_3759 0.84 +0.7
4,477,838 - Psyr_3759 0.84 -3.5
4,477,852 + Psyr_3759 0.85 -0.6
4,477,852 + Psyr_3759 0.85 +0.5
4,477,852 + Psyr_3759 0.85 -0.1
4,477,963 + -1.2
4,477,970 - -0.2
4,477,992 + +0.1
4,477,992 + -0.0
4,477,992 + -0.9
4,477,992 + -1.2
4,477,992 + -0.6
4,477,993 - -0.9
4,477,993 - +0.8
4,477,996 + +0.0
4,478,049 + -1.0
4,478,246 + -1.1
4,478,246 + Psyr_3760 0.26 -0.6
4,478,246 + Psyr_3760 0.26 -0.1
4,478,247 - Psyr_3760 0.26 +0.2
4,478,247 - Psyr_3760 0.26 -1.8
4,478,279 + Psyr_3760 0.30 -0.7
4,478,292 - Psyr_3760 0.32 +1.6
4,478,310 + Psyr_3760 0.34 -0.8
4,478,311 - Psyr_3760 0.34 -0.9
4,478,339 + Psyr_3760 0.38 -0.2
4,478,339 + Psyr_3760 0.38 -0.9
4,478,340 - Psyr_3760 0.38 +0.3
4,478,567 + Psyr_3760 0.66 +0.1
4,478,567 + Psyr_3760 0.66 -0.5
4,478,567 + Psyr_3760 0.66 +0.6
4,478,567 + Psyr_3760 0.66 -1.9
4,478,589 - Psyr_3760 0.68 -0.6
4,478,651 + Psyr_3760 0.76 +0.1
4,478,744 + Psyr_3760 0.87 -0.6
4,478,744 + Psyr_3760 0.87 +0.7
4,478,744 + Psyr_3760 0.87 -0.5
4,478,810 + -2.2
4,478,811 - -2.1
4,478,849 + +0.5
4,478,858 - +2.7
4,478,911 + -1.2
4,478,912 - +0.1
4,479,015 + +1.2
4,479,016 - -0.1
4,479,152 - Psyr_3761 0.29 -0.2
4,479,155 + Psyr_3761 0.30 +0.5
4,479,155 + Psyr_3761 0.30 +0.7
4,479,155 + Psyr_3761 0.30 +1.3
4,479,155 + Psyr_3761 0.30 +0.8
4,479,155 + Psyr_3761 0.30 +1.4
4,479,155 + Psyr_3761 0.30 +0.9
4,479,155 + Psyr_3761 0.30 -0.6
4,479,155 + Psyr_3761 0.30 +0.7
4,479,155 + Psyr_3761 0.30 -0.5
4,479,155 + Psyr_3761 0.30 +0.2
4,479,156 - Psyr_3761 0.30 -1.0
4,479,156 - Psyr_3761 0.30 -1.1
4,479,156 - Psyr_3761 0.30 +1.1
4,479,156 - Psyr_3761 0.30 -0.5
4,479,156 - Psyr_3761 0.30 +0.2
4,479,156 - Psyr_3761 0.30 +0.1
4,479,156 - Psyr_3761 0.30 +0.7
4,479,156 - Psyr_3761 0.30 -0.3
4,479,156 - Psyr_3761 0.30 +0.7
4,479,156 - Psyr_3761 0.30 -0.2
4,479,218 - Psyr_3761 0.40 +0.1
4,479,218 - Psyr_3761 0.40 +0.2
4,479,305 + Psyr_3761 0.55 +1.5
4,479,721 - -2.7
4,479,773 + +0.9
4,479,773 + -1.3

Or see this region's nucleotide sequence