Experiment: KB with Fusaric 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3693 and Psyr_3694 are separated by 30 nucleotides Psyr_3694 and Psyr_3695 are separated by 129 nucleotides Psyr_3695 and Psyr_3696 are separated by 156 nucleotides
Psyr_3693: Psyr_3693 - conserved hypothetical protein, at 4,379,109 to 4,379,648
_3693
Psyr_3694: Psyr_3694 - MazG, bacterial, at 4,379,679 to 4,380,512
_3694
Psyr_3695: Psyr_3695 - RelA/SpoT protein, at 4,380,642 to 4,382,885
_3695
Psyr_3696: Psyr_3696 - 23S rRNA m(5)U-1939 methyltransferase, at 4,383,042 to 4,384,397
_3696
Position (kb) 4380
4381
4382
4383 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 4379.653 kb on + strand at 4379.654 kb on - strand at 4379.661 kb on + strand at 4379.661 kb on + strand at 4379.661 kb on + strand at 4379.661 kb on + strand at 4379.661 kb on + strand at 4379.661 kb on + strand at 4379.661 kb on + strand at 4379.661 kb on + strand at 4379.661 kb on + strand at 4379.661 kb on + strand at 4379.661 kb on + strand at 4379.661 kb on + strand at 4379.662 kb on - strand at 4379.662 kb on - strand at 4379.662 kb on - strand at 4379.662 kb on - strand at 4379.662 kb on - strand at 4379.662 kb on - strand at 4379.662 kb on - strand at 4379.662 kb on - strand at 4379.662 kb on - strand at 4379.663 kb on + strand at 4379.663 kb on + strand at 4379.663 kb on + strand at 4379.664 kb on - strand at 4379.664 kb on - strand at 4379.763 kb on - strand, within Psyr_3694 at 4380.307 kb on + strand, within Psyr_3694 at 4380.307 kb on + strand, within Psyr_3694 at 4380.307 kb on + strand, within Psyr_3694 at 4380.307 kb on + strand, within Psyr_3694 at 4380.307 kb on + strand, within Psyr_3694 at 4380.308 kb on - strand, within Psyr_3694 at 4380.308 kb on - strand, within Psyr_3694 at 4380.391 kb on + strand, within Psyr_3694 at 4380.508 kb on + strand at 4380.508 kb on + strand at 4380.508 kb on + strand at 4380.508 kb on + strand at 4380.508 kb on + strand at 4380.508 kb on + strand at 4380.508 kb on + strand at 4380.508 kb on + strand at 4380.508 kb on + strand at 4380.508 kb on + strand at 4380.508 kb on + strand at 4380.508 kb on + strand at 4380.509 kb on - strand at 4380.509 kb on - strand at 4380.509 kb on - strand at 4380.509 kb on - strand at 4380.509 kb on - strand at 4380.509 kb on - strand at 4380.509 kb on - strand at 4380.509 kb on - strand at 4380.509 kb on - strand at 4380.509 kb on - strand at 4380.509 kb on - strand at 4380.509 kb on - strand at 4380.512 kb on + strand at 4380.512 kb on + strand at 4380.512 kb on + strand at 4380.512 kb on + strand at 4380.512 kb on + strand at 4380.513 kb on - strand at 4380.513 kb on - strand at 4380.513 kb on - strand at 4380.513 kb on - strand at 4380.513 kb on - strand at 4380.570 kb on - strand at 4380.570 kb on - strand at 4380.592 kb on - strand at 4380.610 kb on + strand at 4380.610 kb on + strand at 4380.610 kb on + strand at 4380.611 kb on - strand at 4380.611 kb on - strand at 4380.611 kb on - strand at 4380.611 kb on - strand at 4380.624 kb on + strand at 4380.624 kb on + strand at 4380.624 kb on + strand at 4380.625 kb on - strand at 4380.625 kb on - strand at 4380.626 kb on + strand at 4380.626 kb on + strand at 4380.626 kb on + strand at 4380.626 kb on + strand at 4380.626 kb on + strand at 4380.626 kb on + strand at 4380.626 kb on + strand at 4380.626 kb on + strand at 4380.626 kb on + strand at 4380.627 kb on - strand at 4380.627 kb on - strand at 4380.627 kb on - strand at 4380.627 kb on - strand at 4380.627 kb on - strand at 4380.627 kb on - strand at 4380.627 kb on - strand at 4380.627 kb on - strand at 4380.627 kb on - strand at 4380.627 kb on - strand at 4380.627 kb on - strand at 4380.627 kb on - strand at 4380.627 kb on - strand at 4380.631 kb on + strand at 4380.631 kb on + strand at 4380.631 kb on + strand at 4380.631 kb on + strand at 4380.631 kb on + strand at 4380.631 kb on + strand at 4380.631 kb on + strand at 4380.633 kb on + strand at 4380.633 kb on + strand at 4380.633 kb on + strand at 4380.633 kb on + strand at 4380.634 kb on - strand at 4380.634 kb on - strand at 4380.634 kb on - strand at 4380.634 kb on - strand at 4380.634 kb on - strand at 4380.634 kb on - strand at 4380.634 kb on - strand at 4380.634 kb on - strand at 4380.634 kb on - strand at 4380.634 kb on - strand at 4380.634 kb on - strand at 4380.783 kb on - strand at 4380.856 kb on + strand at 4381.004 kb on + strand, within Psyr_3695 at 4381.004 kb on + strand, within Psyr_3695 at 4381.004 kb on + strand, within Psyr_3695 at 4381.005 kb on - strand, within Psyr_3695 at 4381.007 kb on - strand, within Psyr_3695 at 4381.007 kb on - strand, within Psyr_3695 at 4381.411 kb on + strand, within Psyr_3695 at 4381.412 kb on - strand, within Psyr_3695 at 4381.412 kb on - strand, within Psyr_3695 at 4381.412 kb on - strand, within Psyr_3695 at 4381.498 kb on + strand, within Psyr_3695 at 4381.498 kb on + strand, within Psyr_3695 at 4381.498 kb on + strand, within Psyr_3695 at 4381.498 kb on + strand, within Psyr_3695 at 4381.499 kb on - strand, within Psyr_3695 at 4381.499 kb on - strand, within Psyr_3695 at 4381.499 kb on - strand, within Psyr_3695 at 4381.499 kb on - strand, within Psyr_3695 at 4381.544 kb on + strand, within Psyr_3695 at 4381.545 kb on - strand, within Psyr_3695 at 4381.637 kb on - strand, within Psyr_3695 at 4381.747 kb on + strand, within Psyr_3695 at 4381.924 kb on + strand, within Psyr_3695 at 4381.924 kb on + strand, within Psyr_3695 at 4381.924 kb on + strand, within Psyr_3695 at 4381.924 kb on + strand, within Psyr_3695 at 4381.924 kb on + strand, within Psyr_3695 at 4381.925 kb on - strand, within Psyr_3695 at 4381.925 kb on - strand, within Psyr_3695 at 4381.946 kb on + strand, within Psyr_3695 at 4381.946 kb on + strand, within Psyr_3695 at 4381.946 kb on + strand, within Psyr_3695 at 4381.946 kb on + strand, within Psyr_3695 at 4382.032 kb on + strand, within Psyr_3695 at 4382.032 kb on + strand, within Psyr_3695 at 4382.032 kb on + strand, within Psyr_3695 at 4382.033 kb on - strand, within Psyr_3695 at 4382.033 kb on - strand, within Psyr_3695 at 4382.033 kb on - strand, within Psyr_3695 at 4382.033 kb on - strand, within Psyr_3695 at 4382.033 kb on - strand, within Psyr_3695 at 4382.083 kb on + strand, within Psyr_3695 at 4382.083 kb on + strand, within Psyr_3695 at 4382.083 kb on + strand, within Psyr_3695 at 4382.083 kb on + strand, within Psyr_3695 at 4382.083 kb on + strand, within Psyr_3695 at 4382.083 kb on + strand, within Psyr_3695 at 4382.083 kb on + strand, within Psyr_3695 at 4382.083 kb on + strand, within Psyr_3695 at 4382.083 kb on + strand, within Psyr_3695 at 4382.084 kb on - strand, within Psyr_3695 at 4382.084 kb on - strand, within Psyr_3695 at 4382.087 kb on + strand, within Psyr_3695 at 4382.087 kb on + strand, within Psyr_3695 at 4382.087 kb on + strand, within Psyr_3695 at 4382.087 kb on + strand, within Psyr_3695 at 4382.087 kb on + strand, within Psyr_3695 at 4382.087 kb on + strand, within Psyr_3695 at 4382.087 kb on + strand, within Psyr_3695 at 4382.087 kb on + strand, within Psyr_3695 at 4382.087 kb on + strand, within Psyr_3695 at 4382.088 kb on - strand, within Psyr_3695 at 4382.088 kb on - strand, within Psyr_3695 at 4382.088 kb on - strand, within Psyr_3695 at 4382.088 kb on - strand, within Psyr_3695 at 4382.088 kb on - strand, within Psyr_3695 at 4382.088 kb on - strand, within Psyr_3695 at 4382.088 kb on - strand, within Psyr_3695 at 4382.088 kb on - strand, within Psyr_3695 at 4382.088 kb on - strand, within Psyr_3695 at 4382.222 kb on - strand, within Psyr_3695 at 4382.222 kb on - strand, within Psyr_3695 at 4382.222 kb on - strand, within Psyr_3695 at 4382.273 kb on + strand, within Psyr_3695 at 4382.308 kb on + strand, within Psyr_3695 at 4382.308 kb on + strand, within Psyr_3695 at 4382.309 kb on - strand, within Psyr_3695 at 4382.309 kb on - strand, within Psyr_3695 at 4382.309 kb on - strand, within Psyr_3695 at 4382.309 kb on - strand, within Psyr_3695 at 4382.309 kb on - strand, within Psyr_3695 at 4382.309 kb on - strand, within Psyr_3695 at 4382.309 kb on - strand, within Psyr_3695 at 4382.309 kb on - strand, within Psyr_3695 at 4382.309 kb on - strand, within Psyr_3695 at 4382.309 kb on - strand, within Psyr_3695 at 4382.384 kb on + strand, within Psyr_3695 at 4382.384 kb on + strand, within Psyr_3695 at 4382.385 kb on - strand, within Psyr_3695 at 4382.385 kb on - strand at 4382.813 kb on + strand at 4382.813 kb on + strand at 4382.813 kb on + strand at 4382.813 kb on + strand at 4382.813 kb on + strand at 4382.814 kb on - strand at 4382.814 kb on - strand at 4382.814 kb on - strand at 4382.814 kb on - strand at 4382.814 kb on - strand at 4382.814 kb on - strand at 4382.880 kb on + strand at 4382.881 kb on - strand at 4382.892 kb on + strand at 4382.893 kb on - strand at 4383.047 kb on + strand at 4383.047 kb on + strand at 4383.047 kb on + strand at 4383.047 kb on + strand at 4383.047 kb on + strand at 4383.047 kb on + strand at 4383.048 kb on - strand at 4383.048 kb on - strand at 4383.061 kb on - strand at 4383.098 kb on + strand at 4383.120 kb on + strand at 4383.187 kb on + strand, within Psyr_3696 at 4383.187 kb on + strand, within Psyr_3696 at 4383.188 kb on - strand, within Psyr_3696 at 4383.188 kb on - strand, within Psyr_3696 at 4383.188 kb on - strand, within Psyr_3696 at 4383.353 kb on + strand, within Psyr_3696 at 4383.353 kb on + strand, within Psyr_3696 at 4383.354 kb on - strand, within Psyr_3696 at 4383.849 kb on + strand, within Psyr_3696 at 4383.849 kb on + strand, within Psyr_3696 at 4383.850 kb on - strand, within Psyr_3696 at 4383.850 kb on - strand, within Psyr_3696
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Fusaric 250 ug/ml remove 4,379,653 + +1.5 4,379,654 - -1.6 4,379,661 + -1.2 4,379,661 + +1.2 4,379,661 + +1.5 4,379,661 + +2.9 4,379,661 + +0.1 4,379,661 + -0.0 4,379,661 + +0.4 4,379,661 + -0.0 4,379,661 + -0.4 4,379,661 + +1.2 4,379,661 + -0.1 4,379,661 + +0.1 4,379,662 - -1.2 4,379,662 - +0.6 4,379,662 - +0.2 4,379,662 - +1.7 4,379,662 - +0.1 4,379,662 - -0.0 4,379,662 - +0.4 4,379,662 - -0.7 4,379,662 - +0.3 4,379,663 + +0.4 4,379,663 + -1.1 4,379,663 + -0.2 4,379,664 - +0.6 4,379,664 - +0.1 4,379,763 - Psyr_3694 0.10 -0.2 4,380,307 + Psyr_3694 0.75 -2.0 4,380,307 + Psyr_3694 0.75 -0.1 4,380,307 + Psyr_3694 0.75 -0.5 4,380,307 + Psyr_3694 0.75 -0.7 4,380,307 + Psyr_3694 0.75 -0.1 4,380,308 - Psyr_3694 0.75 +0.5 4,380,308 - Psyr_3694 0.75 +0.7 4,380,391 + Psyr_3694 0.85 +0.2 4,380,508 + +0.1 4,380,508 + +0.1 4,380,508 + +1.1 4,380,508 + -1.0 4,380,508 + +0.4 4,380,508 + -0.7 4,380,508 + +1.3 4,380,508 + -0.0 4,380,508 + -0.4 4,380,508 + -0.5 4,380,508 + +0.5 4,380,508 + -1.5 4,380,509 - +0.3 4,380,509 - +0.2 4,380,509 - -1.4 4,380,509 - +0.5 4,380,509 - +1.9 4,380,509 - -2.8 4,380,509 - -1.0 4,380,509 - +1.0 4,380,509 - -0.3 4,380,509 - -0.0 4,380,509 - -1.5 4,380,509 - +0.3 4,380,512 + +0.1 4,380,512 + +0.2 4,380,512 + +0.3 4,380,512 + +2.0 4,380,512 + +0.7 4,380,513 - -0.0 4,380,513 - +0.5 4,380,513 - -0.4 4,380,513 - +0.5 4,380,513 - +0.7 4,380,570 - +0.4 4,380,570 - +0.2 4,380,592 - +0.8 4,380,610 + -2.5 4,380,610 + -0.7 4,380,610 + -1.1 4,380,611 - -0.6 4,380,611 - -0.1 4,380,611 - -0.2 4,380,611 - +0.5 4,380,624 + -0.0 4,380,624 + -1.4 4,380,624 + -2.6 4,380,625 - -0.5 4,380,625 - -0.8 4,380,626 + -0.2 4,380,626 + +0.2 4,380,626 + -0.3 4,380,626 + -0.9 4,380,626 + -1.3 4,380,626 + +0.4 4,380,626 + -0.4 4,380,626 + +0.3 4,380,626 + -0.0 4,380,627 - -0.1 4,380,627 - +0.0 4,380,627 - -1.2 4,380,627 - -1.2 4,380,627 - +0.2 4,380,627 - -0.5 4,380,627 - -0.3 4,380,627 - +0.8 4,380,627 - +0.2 4,380,627 - -2.6 4,380,627 - +0.9 4,380,627 - -0.1 4,380,627 - +2.5 4,380,631 + -1.0 4,380,631 + -0.1 4,380,631 + +0.9 4,380,631 + +0.4 4,380,631 + -0.3 4,380,631 + -0.2 4,380,631 + +1.1 4,380,633 + -1.4 4,380,633 + -0.8 4,380,633 + +1.2 4,380,633 + +0.5 4,380,634 - +0.6 4,380,634 - +0.2 4,380,634 - +0.5 4,380,634 - +0.3 4,380,634 - +1.1 4,380,634 - +0.5 4,380,634 - +0.5 4,380,634 - +1.1 4,380,634 - -0.5 4,380,634 - -1.0 4,380,634 - -2.3 4,380,783 - -0.4 4,380,856 + -0.9 4,381,004 + Psyr_3695 0.16 -2.3 4,381,004 + Psyr_3695 0.16 -0.7 4,381,004 + Psyr_3695 0.16 +0.3 4,381,005 - Psyr_3695 0.16 -1.0 4,381,007 - Psyr_3695 0.16 -2.0 4,381,007 - Psyr_3695 0.16 -0.0 4,381,411 + Psyr_3695 0.34 -3.4 4,381,412 - Psyr_3695 0.34 -1.0 4,381,412 - Psyr_3695 0.34 +1.4 4,381,412 - Psyr_3695 0.34 -2.2 4,381,498 + Psyr_3695 0.38 -2.9 4,381,498 + Psyr_3695 0.38 -1.5 4,381,498 + Psyr_3695 0.38 -1.0 4,381,498 + Psyr_3695 0.38 -1.5 4,381,499 - Psyr_3695 0.38 -1.5 4,381,499 - Psyr_3695 0.38 +0.3 4,381,499 - Psyr_3695 0.38 +1.0 4,381,499 - Psyr_3695 0.38 -0.9 4,381,544 + Psyr_3695 0.40 -2.5 4,381,545 - Psyr_3695 0.40 -1.8 4,381,637 - Psyr_3695 0.44 -3.6 4,381,747 + Psyr_3695 0.49 -1.8 4,381,924 + Psyr_3695 0.57 -1.0 4,381,924 + Psyr_3695 0.57 -2.0 4,381,924 + Psyr_3695 0.57 -0.5 4,381,924 + Psyr_3695 0.57 -0.5 4,381,924 + Psyr_3695 0.57 -2.3 4,381,925 - Psyr_3695 0.57 -2.9 4,381,925 - Psyr_3695 0.57 -1.9 4,381,946 + Psyr_3695 0.58 -1.3 4,381,946 + Psyr_3695 0.58 +0.3 4,381,946 + Psyr_3695 0.58 -2.2 4,381,946 + Psyr_3695 0.58 -1.6 4,382,032 + Psyr_3695 0.62 -2.0 4,382,032 + Psyr_3695 0.62 -1.7 4,382,032 + Psyr_3695 0.62 -1.5 4,382,033 - Psyr_3695 0.62 +0.1 4,382,033 - Psyr_3695 0.62 -1.8 4,382,033 - Psyr_3695 0.62 -1.3 4,382,033 - Psyr_3695 0.62 -2.6 4,382,033 - Psyr_3695 0.62 +0.2 4,382,083 + Psyr_3695 0.64 +1.3 4,382,083 + Psyr_3695 0.64 -0.6 4,382,083 + Psyr_3695 0.64 -3.6 4,382,083 + Psyr_3695 0.64 -1.3 4,382,083 + Psyr_3695 0.64 -0.5 4,382,083 + Psyr_3695 0.64 +0.5 4,382,083 + Psyr_3695 0.64 -2.3 4,382,083 + Psyr_3695 0.64 +0.5 4,382,083 + Psyr_3695 0.64 -3.0 4,382,084 - Psyr_3695 0.64 -2.5 4,382,084 - Psyr_3695 0.64 -1.6 4,382,087 + Psyr_3695 0.64 -1.8 4,382,087 + Psyr_3695 0.64 -2.6 4,382,087 + Psyr_3695 0.64 -2.0 4,382,087 + Psyr_3695 0.64 -1.8 4,382,087 + Psyr_3695 0.64 -1.1 4,382,087 + Psyr_3695 0.64 -1.3 4,382,087 + Psyr_3695 0.64 -3.2 4,382,087 + Psyr_3695 0.64 -1.2 4,382,087 + Psyr_3695 0.64 -1.3 4,382,088 - Psyr_3695 0.64 -0.5 4,382,088 - Psyr_3695 0.64 -3.4 4,382,088 - Psyr_3695 0.64 -1.5 4,382,088 - Psyr_3695 0.64 -0.2 4,382,088 - Psyr_3695 0.64 -0.5 4,382,088 - Psyr_3695 0.64 -1.8 4,382,088 - Psyr_3695 0.64 -0.5 4,382,088 - Psyr_3695 0.64 +0.8 4,382,088 - Psyr_3695 0.64 -2.6 4,382,222 - Psyr_3695 0.70 -1.3 4,382,222 - Psyr_3695 0.70 -1.0 4,382,222 - Psyr_3695 0.70 +1.0 4,382,273 + Psyr_3695 0.73 -2.8 4,382,308 + Psyr_3695 0.74 -0.6 4,382,308 + Psyr_3695 0.74 -1.9 4,382,309 - Psyr_3695 0.74 -2.2 4,382,309 - Psyr_3695 0.74 -1.5 4,382,309 - Psyr_3695 0.74 -0.5 4,382,309 - Psyr_3695 0.74 -2.6 4,382,309 - Psyr_3695 0.74 -0.5 4,382,309 - Psyr_3695 0.74 -1.9 4,382,309 - Psyr_3695 0.74 -1.7 4,382,309 - Psyr_3695 0.74 -3.9 4,382,309 - Psyr_3695 0.74 -0.4 4,382,309 - Psyr_3695 0.74 -2.6 4,382,384 + Psyr_3695 0.78 +0.5 4,382,384 + Psyr_3695 0.78 +0.5 4,382,385 - Psyr_3695 0.78 -2.6 4,382,385 - +1.9 4,382,813 + -2.4 4,382,813 + -1.0 4,382,813 + -2.0 4,382,813 + -2.0 4,382,813 + -2.8 4,382,814 - -0.0 4,382,814 - +0.5 4,382,814 - -1.6 4,382,814 - -2.5 4,382,814 - +1.1 4,382,814 - -0.5 4,382,880 + -0.5 4,382,881 - -2.0 4,382,892 + -3.2 4,382,893 - -2.3 4,383,047 + -2.0 4,383,047 + -2.3 4,383,047 + -2.0 4,383,047 + +0.5 4,383,047 + -0.9 4,383,047 + -1.0 4,383,048 - +1.7 4,383,048 - +0.8 4,383,061 - -0.7 4,383,098 + -2.6 4,383,120 + -2.8 4,383,187 + Psyr_3696 0.11 -1.5 4,383,187 + Psyr_3696 0.11 -3.3 4,383,188 - Psyr_3696 0.11 +1.0 4,383,188 - Psyr_3696 0.11 +0.0 4,383,188 - Psyr_3696 0.11 -1.5 4,383,353 + Psyr_3696 0.23 -1.0 4,383,353 + Psyr_3696 0.23 -1.2 4,383,354 - Psyr_3696 0.23 -0.5 4,383,849 + Psyr_3696 0.60 -0.8 4,383,849 + Psyr_3696 0.60 -0.5 4,383,850 - Psyr_3696 0.60 +0.8 4,383,850 - Psyr_3696 0.60 +0.1
Or see this region's nucleotide sequence