Experiment: KB with Fusaric 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3462 and Psyr_3463 are separated by 24 nucleotides Psyr_3463 and Psyr_3464 are separated by 123 nucleotides Psyr_3464 and Psyr_3465 are separated by 83 nucleotides Psyr_3465 and Psyr_3466 are separated by 72 nucleotides
Psyr_3462: Psyr_3462 - conserved hypothetical protein, at 4,126,855 to 4,127,151
_3462
Psyr_3463: Psyr_3463 - Flagellar protein FliS, at 4,127,176 to 4,127,565
_3463
Psyr_3464: Psyr_3464 - Flagellar hook-associated protein 2, N-terminal:Flagellar hook-associated 2, C-terminal:Flagellin hook IN, at 4,127,689 to 4,129,140
_3464
Psyr_3465: Psyr_3465 - Flagellar protein FlaG protein, at 4,129,224 to 4,129,616
_3465
Psyr_3466: Psyr_3466 - Flagellin, C-terminal:Flagellin, N-terminal, at 4,129,689 to 4,130,537
_3466
Position (kb) 4127
4128
4129
4130 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 4126.742 kb on + strand at 4126.742 kb on + strand at 4126.743 kb on - strand at 4126.743 kb on - strand at 4126.743 kb on - strand at 4126.744 kb on + strand at 4126.744 kb on + strand at 4126.745 kb on - strand at 4126.745 kb on - strand at 4126.769 kb on + strand at 4126.783 kb on + strand at 4126.783 kb on + strand at 4126.783 kb on + strand at 4126.783 kb on + strand at 4126.784 kb on - strand at 4126.784 kb on - strand at 4126.849 kb on + strand at 4126.871 kb on + strand at 4126.871 kb on + strand at 4126.872 kb on - strand at 4126.872 kb on - strand at 4126.873 kb on + strand at 4126.873 kb on + strand at 4126.873 kb on + strand at 4126.873 kb on + strand at 4126.874 kb on - strand at 4126.874 kb on - strand at 4126.964 kb on + strand, within Psyr_3462 at 4126.964 kb on + strand, within Psyr_3462 at 4126.965 kb on - strand, within Psyr_3462 at 4126.975 kb on + strand, within Psyr_3462 at 4127.152 kb on + strand at 4127.177 kb on + strand at 4127.294 kb on + strand, within Psyr_3463 at 4127.294 kb on + strand, within Psyr_3463 at 4127.294 kb on + strand, within Psyr_3463 at 4127.294 kb on + strand, within Psyr_3463 at 4127.294 kb on + strand, within Psyr_3463 at 4127.294 kb on + strand, within Psyr_3463 at 4127.295 kb on - strand, within Psyr_3463 at 4127.295 kb on - strand, within Psyr_3463 at 4127.295 kb on - strand, within Psyr_3463 at 4127.295 kb on - strand, within Psyr_3463 at 4127.295 kb on - strand, within Psyr_3463 at 4127.295 kb on - strand, within Psyr_3463 at 4127.552 kb on - strand at 4127.591 kb on + strand at 4127.591 kb on + strand at 4127.606 kb on + strand at 4127.636 kb on - strand at 4127.672 kb on - strand at 4127.733 kb on + strand at 4127.733 kb on + strand at 4127.733 kb on + strand at 4127.733 kb on + strand at 4127.733 kb on + strand at 4127.734 kb on - strand at 4127.734 kb on - strand at 4127.734 kb on - strand at 4127.734 kb on - strand at 4127.785 kb on - strand at 4127.785 kb on - strand at 4127.786 kb on + strand at 4127.786 kb on + strand at 4127.786 kb on + strand at 4127.786 kb on + strand at 4127.787 kb on - strand at 4127.787 kb on - strand at 4127.787 kb on - strand at 4127.818 kb on - strand at 4127.820 kb on + strand at 4127.820 kb on + strand at 4127.821 kb on - strand at 4127.821 kb on - strand at 4127.868 kb on + strand, within Psyr_3464 at 4127.869 kb on - strand, within Psyr_3464 at 4127.871 kb on + strand, within Psyr_3464 at 4127.872 kb on - strand, within Psyr_3464 at 4127.872 kb on - strand, within Psyr_3464 at 4127.872 kb on - strand, within Psyr_3464 at 4127.914 kb on - strand, within Psyr_3464 at 4128.130 kb on - strand, within Psyr_3464 at 4128.206 kb on + strand, within Psyr_3464 at 4128.206 kb on + strand, within Psyr_3464 at 4128.206 kb on + strand, within Psyr_3464 at 4128.206 kb on + strand, within Psyr_3464 at 4128.206 kb on + strand, within Psyr_3464 at 4128.207 kb on - strand, within Psyr_3464 at 4128.207 kb on - strand, within Psyr_3464 at 4128.210 kb on + strand, within Psyr_3464 at 4128.210 kb on + strand, within Psyr_3464 at 4128.211 kb on - strand, within Psyr_3464 at 4128.269 kb on + strand, within Psyr_3464 at 4128.269 kb on + strand, within Psyr_3464 at 4128.269 kb on + strand, within Psyr_3464 at 4128.269 kb on + strand, within Psyr_3464 at 4128.269 kb on + strand, within Psyr_3464 at 4128.270 kb on - strand, within Psyr_3464 at 4128.270 kb on - strand, within Psyr_3464 at 4128.528 kb on + strand, within Psyr_3464 at 4128.529 kb on - strand, within Psyr_3464 at 4128.529 kb on - strand, within Psyr_3464 at 4128.529 kb on - strand, within Psyr_3464 at 4128.719 kb on + strand, within Psyr_3464 at 4128.719 kb on + strand, within Psyr_3464 at 4128.719 kb on + strand, within Psyr_3464 at 4128.719 kb on + strand, within Psyr_3464 at 4128.720 kb on - strand, within Psyr_3464 at 4128.720 kb on - strand, within Psyr_3464 at 4128.763 kb on - strand, within Psyr_3464 at 4128.763 kb on - strand, within Psyr_3464 at 4128.763 kb on - strand, within Psyr_3464 at 4128.763 kb on - strand, within Psyr_3464 at 4128.891 kb on + strand, within Psyr_3464 at 4128.891 kb on + strand, within Psyr_3464 at 4128.891 kb on + strand, within Psyr_3464 at 4128.892 kb on - strand, within Psyr_3464 at 4128.892 kb on - strand, within Psyr_3464 at 4128.892 kb on - strand, within Psyr_3464 at 4128.892 kb on - strand, within Psyr_3464 at 4128.892 kb on - strand, within Psyr_3464 at 4128.900 kb on + strand, within Psyr_3464 at 4128.900 kb on + strand, within Psyr_3464 at 4128.901 kb on - strand, within Psyr_3464 at 4128.901 kb on - strand, within Psyr_3464 at 4129.111 kb on - strand at 4129.119 kb on + strand at 4129.119 kb on + strand at 4129.119 kb on + strand at 4129.119 kb on + strand at 4129.119 kb on + strand at 4129.119 kb on + strand at 4129.120 kb on - strand at 4129.120 kb on - strand at 4129.120 kb on - strand at 4129.120 kb on - strand at 4129.120 kb on - strand at 4129.120 kb on - strand at 4129.125 kb on + strand at 4129.125 kb on + strand at 4129.125 kb on + strand at 4129.126 kb on - strand at 4129.126 kb on - strand at 4129.126 kb on - strand at 4129.126 kb on - strand at 4129.126 kb on - strand at 4129.308 kb on + strand, within Psyr_3465 at 4129.308 kb on + strand, within Psyr_3465 at 4129.308 kb on + strand, within Psyr_3465 at 4129.308 kb on + strand, within Psyr_3465 at 4129.309 kb on - strand, within Psyr_3465 at 4129.311 kb on + strand, within Psyr_3465 at 4129.311 kb on + strand, within Psyr_3465 at 4129.311 kb on + strand, within Psyr_3465 at 4129.311 kb on + strand, within Psyr_3465 at 4129.312 kb on - strand, within Psyr_3465 at 4129.312 kb on - strand, within Psyr_3465 at 4129.312 kb on - strand, within Psyr_3465 at 4129.312 kb on - strand, within Psyr_3465 at 4129.439 kb on + strand, within Psyr_3465 at 4129.439 kb on + strand, within Psyr_3465 at 4129.482 kb on - strand, within Psyr_3465 at 4129.482 kb on - strand, within Psyr_3465 at 4129.482 kb on - strand, within Psyr_3465 at 4129.482 kb on - strand, within Psyr_3465 at 4129.611 kb on - strand at 4129.657 kb on + strand at 4129.657 kb on + strand at 4129.658 kb on - strand at 4129.658 kb on - strand at 4129.658 kb on - strand at 4129.690 kb on + strand at 4129.691 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Fusaric 250 ug/ml remove 4,126,742 + -1.8 4,126,742 + -0.6 4,126,743 - -0.1 4,126,743 - +1.2 4,126,743 - +0.5 4,126,744 + -3.4 4,126,744 + -1.1 4,126,745 - +0.5 4,126,745 - +0.2 4,126,769 + -1.3 4,126,783 + -1.8 4,126,783 + -1.1 4,126,783 + -1.1 4,126,783 + -0.9 4,126,784 - -1.4 4,126,784 - -1.4 4,126,849 + -0.3 4,126,871 + -1.4 4,126,871 + -0.7 4,126,872 - +0.8 4,126,872 - -1.9 4,126,873 + -0.3 4,126,873 + -1.1 4,126,873 + -1.2 4,126,873 + +0.9 4,126,874 - -0.6 4,126,874 - +1.2 4,126,964 + Psyr_3462 0.37 +3.8 4,126,964 + Psyr_3462 0.37 +0.4 4,126,965 - Psyr_3462 0.37 -0.7 4,126,975 + Psyr_3462 0.40 -0.9 4,127,152 + +0.3 4,127,177 + +0.7 4,127,294 + Psyr_3463 0.30 +1.5 4,127,294 + Psyr_3463 0.30 -1.8 4,127,294 + Psyr_3463 0.30 -0.1 4,127,294 + Psyr_3463 0.30 -1.4 4,127,294 + Psyr_3463 0.30 +1.3 4,127,294 + Psyr_3463 0.30 -1.0 4,127,295 - Psyr_3463 0.31 +0.2 4,127,295 - Psyr_3463 0.31 +0.3 4,127,295 - Psyr_3463 0.31 +1.1 4,127,295 - Psyr_3463 0.31 +0.5 4,127,295 - Psyr_3463 0.31 -0.3 4,127,295 - Psyr_3463 0.31 +0.5 4,127,552 - -1.5 4,127,591 + -0.5 4,127,591 + -0.2 4,127,606 + +2.1 4,127,636 - +1.8 4,127,672 - -0.6 4,127,733 + -4.1 4,127,733 + +0.7 4,127,733 + -0.5 4,127,733 + -1.2 4,127,733 + -1.8 4,127,734 - -0.6 4,127,734 - +0.2 4,127,734 - -0.1 4,127,734 - +0.2 4,127,785 - +1.1 4,127,785 - +0.0 4,127,786 + -0.2 4,127,786 + +0.1 4,127,786 + -2.0 4,127,786 + -0.7 4,127,787 - -0.5 4,127,787 - +0.5 4,127,787 - +3.0 4,127,818 - +0.0 4,127,820 + -1.1 4,127,820 + -1.2 4,127,821 - -1.4 4,127,821 - -0.0 4,127,868 + Psyr_3464 0.12 +0.1 4,127,869 - Psyr_3464 0.12 -0.4 4,127,871 + Psyr_3464 0.13 +0.4 4,127,872 - Psyr_3464 0.13 +1.1 4,127,872 - Psyr_3464 0.13 -0.3 4,127,872 - Psyr_3464 0.13 +0.8 4,127,914 - Psyr_3464 0.15 -1.2 4,128,130 - Psyr_3464 0.30 +0.2 4,128,206 + Psyr_3464 0.36 +0.6 4,128,206 + Psyr_3464 0.36 +0.4 4,128,206 + Psyr_3464 0.36 -3.4 4,128,206 + Psyr_3464 0.36 +0.5 4,128,206 + Psyr_3464 0.36 +0.8 4,128,207 - Psyr_3464 0.36 -0.5 4,128,207 - Psyr_3464 0.36 -0.2 4,128,210 + Psyr_3464 0.36 +0.0 4,128,210 + Psyr_3464 0.36 -0.7 4,128,211 - Psyr_3464 0.36 -0.5 4,128,269 + Psyr_3464 0.40 -0.4 4,128,269 + Psyr_3464 0.40 +0.1 4,128,269 + Psyr_3464 0.40 -0.7 4,128,269 + Psyr_3464 0.40 +0.2 4,128,269 + Psyr_3464 0.40 +0.3 4,128,270 - Psyr_3464 0.40 -0.2 4,128,270 - Psyr_3464 0.40 +0.5 4,128,528 + Psyr_3464 0.58 -0.5 4,128,529 - Psyr_3464 0.58 -1.0 4,128,529 - Psyr_3464 0.58 -2.1 4,128,529 - Psyr_3464 0.58 +0.5 4,128,719 + Psyr_3464 0.71 +0.5 4,128,719 + Psyr_3464 0.71 -1.8 4,128,719 + Psyr_3464 0.71 -0.4 4,128,719 + Psyr_3464 0.71 -0.1 4,128,720 - Psyr_3464 0.71 -1.4 4,128,720 - Psyr_3464 0.71 -0.3 4,128,763 - Psyr_3464 0.74 -1.3 4,128,763 - Psyr_3464 0.74 +0.9 4,128,763 - Psyr_3464 0.74 +0.5 4,128,763 - Psyr_3464 0.74 -0.9 4,128,891 + Psyr_3464 0.83 -0.6 4,128,891 + Psyr_3464 0.83 -2.6 4,128,891 + Psyr_3464 0.83 +1.2 4,128,892 - Psyr_3464 0.83 -1.9 4,128,892 - Psyr_3464 0.83 -0.9 4,128,892 - Psyr_3464 0.83 -2.5 4,128,892 - Psyr_3464 0.83 -0.2 4,128,892 - Psyr_3464 0.83 -1.9 4,128,900 + Psyr_3464 0.83 -0.6 4,128,900 + Psyr_3464 0.83 -0.7 4,128,901 - Psyr_3464 0.83 -0.7 4,128,901 - Psyr_3464 0.83 -1.2 4,129,111 - -0.6 4,129,119 + -0.2 4,129,119 + -0.7 4,129,119 + +1.3 4,129,119 + +0.5 4,129,119 + -1.7 4,129,119 + +0.2 4,129,120 - +0.5 4,129,120 - -0.1 4,129,120 - -0.6 4,129,120 - +0.2 4,129,120 - +1.1 4,129,120 - +0.5 4,129,125 + -1.1 4,129,125 + -1.4 4,129,125 + -1.3 4,129,126 - -2.0 4,129,126 - -1.6 4,129,126 - -0.5 4,129,126 - -0.2 4,129,126 - -0.3 4,129,308 + Psyr_3465 0.21 -0.5 4,129,308 + Psyr_3465 0.21 -0.3 4,129,308 + Psyr_3465 0.21 +0.1 4,129,308 + Psyr_3465 0.21 +0.3 4,129,309 - Psyr_3465 0.22 -0.7 4,129,311 + Psyr_3465 0.22 -1.5 4,129,311 + Psyr_3465 0.22 +0.7 4,129,311 + Psyr_3465 0.22 -0.3 4,129,311 + Psyr_3465 0.22 -0.7 4,129,312 - Psyr_3465 0.22 +1.0 4,129,312 - Psyr_3465 0.22 +0.8 4,129,312 - Psyr_3465 0.22 +0.0 4,129,312 - Psyr_3465 0.22 +0.3 4,129,439 + Psyr_3465 0.55 -0.2 4,129,439 + Psyr_3465 0.55 -2.3 4,129,482 - Psyr_3465 0.66 -1.5 4,129,482 - Psyr_3465 0.66 -0.2 4,129,482 - Psyr_3465 0.66 -1.4 4,129,482 - Psyr_3465 0.66 +0.2 4,129,611 - -0.8 4,129,657 + -0.9 4,129,657 + -0.2 4,129,658 - +0.3 4,129,658 - +0.1 4,129,658 - +0.4 4,129,690 + +0.7 4,129,691 - -0.1
Or see this region's nucleotide sequence