Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3421

Experiment: KB with Fusaric 250 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3419 and Psyr_3420 are separated by 10 nucleotidesPsyr_3420 and Psyr_3421 are separated by 2 nucleotidesPsyr_3421 and Psyr_3422 are separated by 108 nucleotidesPsyr_3422 and Psyr_3423 are separated by 95 nucleotides Psyr_3419: Psyr_3419 - 4Fe-4S ferredoxin, iron-sulfur binding protein, at 4,082,060 to 4,083,472 _3419 Psyr_3420: Psyr_3420 - conserved hypothetical protein, at 4,083,483 to 4,084,019 _3420 Psyr_3421: Psyr_3421 - Copper-translocating P-type ATPase:Heavy metal translocating P-type ATPase, at 4,084,022 to 4,086,496 _3421 Psyr_3422: Psyr_3422 - membrane protein, putative, at 4,086,605 to 4,087,354 _3422 Psyr_3423: Psyr_3423 - coproporphyrinogen III oxidase, anaerobic, at 4,087,450 to 4,088,835 _3423 Position (kb) 4084 4085 4086 4087Strain fitness (log2 ratio) -2 -1 0 1at 4083.255 kb on - strand, within Psyr_3419at 4083.463 kb on + strandat 4083.463 kb on + strandat 4083.463 kb on + strandat 4083.464 kb on - strandat 4083.464 kb on - strandat 4083.627 kb on + strand, within Psyr_3420at 4083.627 kb on + strand, within Psyr_3420at 4083.627 kb on + strand, within Psyr_3420at 4083.627 kb on + strandat 4083.627 kb on + strand, within Psyr_3420at 4083.627 kb on + strand, within Psyr_3420at 4083.627 kb on + strand, within Psyr_3420at 4083.630 kb on + strand, within Psyr_3420at 4086.487 kb on + strandat 4086.487 kb on + strandat 4086.487 kb on + strandat 4086.487 kb on + strandat 4086.487 kb on + strandat 4087.296 kb on + strandat 4087.361 kb on + strandat 4087.493 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Fusaric 250 ug/ml
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4,083,255 - Psyr_3419 0.85 -2.3
4,083,463 + +0.2
4,083,463 + -0.7
4,083,463 + +1.4
4,083,464 - +0.1
4,083,464 - -2.1
4,083,627 + Psyr_3420 0.27 -0.2
4,083,627 + Psyr_3420 0.27 -0.9
4,083,627 + Psyr_3420 0.27 -0.8
4,083,627 + -0.8
4,083,627 + Psyr_3420 0.27 -0.8
4,083,627 + Psyr_3420 0.27 +0.1
4,083,627 + Psyr_3420 0.27 -1.1
4,083,630 + Psyr_3420 0.27 -2.0
4,086,487 + -1.4
4,086,487 + -1.0
4,086,487 + -2.1
4,086,487 + -2.3
4,086,487 + -1.4
4,087,296 + -1.8
4,087,361 + +0.9
4,087,493 - -1.1

Or see this region's nucleotide sequence