Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3246

Experiment: KB with Fusaric 250 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3245 and Psyr_3246 are separated by 20 nucleotidesPsyr_3246 and Psyr_3247 are separated by 387 nucleotides Psyr_3245: Psyr_3245 - ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module, at 3,886,134 to 3,888,734 _3245 Psyr_3246: Psyr_3246 - Ku, at 3,888,755 to 3,889,660 _3246 Psyr_3247: Psyr_3247 - Alkanesulfonate monooxygenase, at 3,890,048 to 3,891,187 _3247 Position (kb) 3888 3889 3890Strain fitness (log2 ratio) -2 -1 0 1at 3887.971 kb on + strand, within Psyr_3245at 3887.972 kb on - strand, within Psyr_3245at 3888.365 kb on - strand, within Psyr_3245at 3888.433 kb on + strand, within Psyr_3245at 3888.433 kb on + strand, within Psyr_3245at 3888.712 kb on + strandat 3888.712 kb on + strandat 3888.712 kb on + strandat 3888.712 kb on + strandat 3888.713 kb on - strandat 3888.778 kb on + strandat 3888.778 kb on + strandat 3888.779 kb on - strandat 3888.779 kb on - strandat 3889.261 kb on + strand, within Psyr_3246at 3889.293 kb on + strand, within Psyr_3246at 3889.383 kb on - strand, within Psyr_3246at 3889.446 kb on + strand, within Psyr_3246at 3889.447 kb on - strand, within Psyr_3246at 3889.527 kb on + strand, within Psyr_3246at 3889.610 kb on + strandat 3889.612 kb on + strandat 3889.612 kb on + strandat 3889.612 kb on + strandat 3889.612 kb on + strandat 3889.612 kb on + strandat 3889.612 kb on + strandat 3889.612 kb on + strandat 3889.613 kb on - strandat 3889.613 kb on - strandat 3889.613 kb on - strandat 3889.763 kb on + strandat 3889.825 kb on + strandat 3889.826 kb on - strandat 3889.866 kb on + strandat 3889.949 kb on + strandat 3889.950 kb on - strandat 3889.951 kb on + strandat 3889.951 kb on + strandat 3889.952 kb on - strandat 3890.030 kb on + strandat 3890.030 kb on + strandat 3890.031 kb on - strandat 3890.031 kb on - strandat 3890.132 kb on + strandat 3890.133 kb on - strandat 3890.133 kb on - strandat 3890.133 kb on - strandat 3890.133 kb on - strandat 3890.175 kb on - strand, within Psyr_3247at 3890.175 kb on - strand, within Psyr_3247at 3890.181 kb on + strand, within Psyr_3247at 3890.181 kb on + strand, within Psyr_3247at 3890.181 kb on + strand, within Psyr_3247at 3890.181 kb on + strand, within Psyr_3247at 3890.181 kb on + strand, within Psyr_3247at 3890.182 kb on - strand, within Psyr_3247at 3890.182 kb on - strand, within Psyr_3247at 3890.182 kb on - strand, within Psyr_3247at 3890.182 kb on - strand, within Psyr_3247at 3890.182 kb on - strand, within Psyr_3247at 3890.182 kb on - strand, within Psyr_3247at 3890.182 kb on - strand, within Psyr_3247at 3890.261 kb on + strand, within Psyr_3247at 3890.261 kb on + strand, within Psyr_3247at 3890.261 kb on + strand, within Psyr_3247at 3890.564 kb on + strand, within Psyr_3247at 3890.621 kb on + strand, within Psyr_3247at 3890.621 kb on + strand, within Psyr_3247at 3890.621 kb on + strand, within Psyr_3247

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Fusaric 250 ug/ml
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3,887,971 + Psyr_3245 0.71 -0.3
3,887,972 - Psyr_3245 0.71 -0.3
3,888,365 - Psyr_3245 0.86 -0.0
3,888,433 + Psyr_3245 0.88 -0.0
3,888,433 + Psyr_3245 0.88 +1.1
3,888,712 + -0.2
3,888,712 + -0.7
3,888,712 + -0.3
3,888,712 + +0.5
3,888,713 - +0.4
3,888,778 + +1.5
3,888,778 + +1.4
3,888,779 - -0.4
3,888,779 - -0.4
3,889,261 + Psyr_3246 0.56 -1.7
3,889,293 + Psyr_3246 0.59 -0.3
3,889,383 - Psyr_3246 0.69 -0.4
3,889,446 + Psyr_3246 0.76 -0.5
3,889,447 - Psyr_3246 0.76 -1.2
3,889,527 + Psyr_3246 0.85 -1.1
3,889,610 + +0.3
3,889,612 + +0.2
3,889,612 + +0.3
3,889,612 + -0.0
3,889,612 + -1.6
3,889,612 + +0.2
3,889,612 + +1.2
3,889,612 + -0.5
3,889,613 - -0.5
3,889,613 - -0.7
3,889,613 - +1.1
3,889,763 + -0.2
3,889,825 + -0.0
3,889,826 - -0.8
3,889,866 + -2.1
3,889,949 + +0.1
3,889,950 - +0.4
3,889,951 + +0.1
3,889,951 + -0.1
3,889,952 - -1.6
3,890,030 + -1.8
3,890,030 + -0.5
3,890,031 - -0.4
3,890,031 - -1.1
3,890,132 + -0.3
3,890,133 - -0.7
3,890,133 - +0.1
3,890,133 - +0.7
3,890,133 - +1.2
3,890,175 - Psyr_3247 0.11 -0.5
3,890,175 - Psyr_3247 0.11 -0.3
3,890,181 + Psyr_3247 0.12 +1.7
3,890,181 + Psyr_3247 0.12 +0.3
3,890,181 + Psyr_3247 0.12 +0.6
3,890,181 + Psyr_3247 0.12 -0.5
3,890,181 + Psyr_3247 0.12 -0.2
3,890,182 - Psyr_3247 0.12 +0.1
3,890,182 - Psyr_3247 0.12 +0.1
3,890,182 - Psyr_3247 0.12 -1.4
3,890,182 - Psyr_3247 0.12 -1.2
3,890,182 - Psyr_3247 0.12 +1.5
3,890,182 - Psyr_3247 0.12 -1.1
3,890,182 - Psyr_3247 0.12 +0.5
3,890,261 + Psyr_3247 0.19 +0.7
3,890,261 + Psyr_3247 0.19 -1.1
3,890,261 + Psyr_3247 0.19 -2.1
3,890,564 + Psyr_3247 0.45 +0.5
3,890,621 + Psyr_3247 0.50 -0.1
3,890,621 + Psyr_3247 0.50 +1.1
3,890,621 + Psyr_3247 0.50 +0.4

Or see this region's nucleotide sequence