Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2968

Experiment: KB with Fusaric 250 ug/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_2967 and Psyr_2968 are separated by 12 nucleotidesPsyr_2968 and Psyr_2969 overlap by 1 nucleotides Psyr_2967: Psyr_2967 - Secretion protein HlyD, at 3,556,381 to 3,557,622 _2967 Psyr_2968: Psyr_2968 - Hydrophobe/amphiphile efflux-1 HAE1, at 3,557,635 to 3,560,826 _2968 Psyr_2969: Psyr_2969 - RND efflux system, outer membrane lipoprotein, NodT, at 3,560,826 to 3,562,223 _2969 Position (kb) 3557 3558 3559 3560 3561Strain fitness (log2 ratio) -2 -1 0 1 2at 3556.813 kb on - strand, within Psyr_2967at 3557.009 kb on - strand, within Psyr_2967at 3557.014 kb on + strand, within Psyr_2967at 3557.014 kb on + strand, within Psyr_2967at 3557.015 kb on - strand, within Psyr_2967at 3557.015 kb on - strand, within Psyr_2967at 3557.015 kb on - strand, within Psyr_2967at 3557.015 kb on - strand, within Psyr_2967at 3557.015 kb on - strand, within Psyr_2967at 3557.015 kb on - strand, within Psyr_2967at 3557.048 kb on - strand, within Psyr_2967at 3557.048 kb on - strand, within Psyr_2967at 3557.095 kb on + strand, within Psyr_2967at 3557.096 kb on - strand, within Psyr_2967at 3557.237 kb on - strand, within Psyr_2967at 3557.269 kb on + strand, within Psyr_2967at 3557.270 kb on - strand, within Psyr_2967at 3557.270 kb on - strand, within Psyr_2967at 3557.270 kb on - strand, within Psyr_2967at 3557.655 kb on + strandat 3557.656 kb on - strandat 3557.869 kb on + strandat 3557.869 kb on + strandat 3557.869 kb on + strandat 3557.869 kb on + strandat 3557.869 kb on + strandat 3557.869 kb on + strandat 3557.869 kb on + strandat 3557.869 kb on + strandat 3557.869 kb on + strandat 3557.869 kb on + strandat 3557.869 kb on + strandat 3557.870 kb on - strandat 3557.870 kb on - strandat 3557.870 kb on - strandat 3557.870 kb on - strandat 3557.870 kb on - strandat 3557.870 kb on - strandat 3558.097 kb on + strand, within Psyr_2968at 3558.098 kb on - strand, within Psyr_2968at 3558.109 kb on + strand, within Psyr_2968at 3558.109 kb on + strand, within Psyr_2968at 3558.110 kb on - strand, within Psyr_2968at 3558.188 kb on - strand, within Psyr_2968at 3558.560 kb on + strand, within Psyr_2968at 3558.561 kb on - strand, within Psyr_2968at 3558.561 kb on - strand, within Psyr_2968at 3558.561 kb on - strand, within Psyr_2968at 3558.610 kb on + strand, within Psyr_2968at 3558.696 kb on - strand, within Psyr_2968at 3558.795 kb on + strand, within Psyr_2968at 3558.795 kb on + strand, within Psyr_2968at 3558.795 kb on + strand, within Psyr_2968at 3558.795 kb on + strand, within Psyr_2968at 3558.795 kb on + strand, within Psyr_2968at 3558.795 kb on + strand, within Psyr_2968at 3558.795 kb on + strand, within Psyr_2968at 3558.795 kb on + strand, within Psyr_2968at 3558.795 kb on + strand, within Psyr_2968at 3558.795 kb on + strand, within Psyr_2968at 3558.795 kb on + strand, within Psyr_2968at 3558.795 kb on + strand, within Psyr_2968at 3558.796 kb on - strand, within Psyr_2968at 3558.796 kb on - strand, within Psyr_2968at 3558.796 kb on - strand, within Psyr_2968at 3558.796 kb on - strand, within Psyr_2968at 3558.796 kb on - strand, within Psyr_2968at 3558.796 kb on - strand, within Psyr_2968at 3558.796 kb on - strand, within Psyr_2968at 3558.796 kb on - strand, within Psyr_2968at 3559.015 kb on - strand, within Psyr_2968at 3559.039 kb on + strand, within Psyr_2968at 3559.039 kb on + strand, within Psyr_2968at 3559.039 kb on + strand, within Psyr_2968at 3559.039 kb on + strand, within Psyr_2968at 3559.040 kb on - strand, within Psyr_2968at 3559.040 kb on - strand, within Psyr_2968at 3559.040 kb on - strand, within Psyr_2968at 3559.040 kb on - strand, within Psyr_2968at 3559.041 kb on + strand, within Psyr_2968at 3559.041 kb on + strand, within Psyr_2968at 3559.041 kb on + strand, within Psyr_2968at 3559.241 kb on - strand, within Psyr_2968at 3559.372 kb on + strand, within Psyr_2968at 3559.372 kb on + strand, within Psyr_2968at 3559.373 kb on - strand, within Psyr_2968at 3559.645 kb on + strand, within Psyr_2968at 3559.645 kb on + strand, within Psyr_2968at 3559.645 kb on + strand, within Psyr_2968at 3559.645 kb on + strand, within Psyr_2968at 3559.645 kb on + strand, within Psyr_2968at 3559.646 kb on - strand, within Psyr_2968at 3559.646 kb on - strand, within Psyr_2968at 3559.747 kb on + strand, within Psyr_2968at 3559.816 kb on + strand, within Psyr_2968at 3559.829 kb on + strand, within Psyr_2968at 3559.829 kb on + strand, within Psyr_2968at 3559.829 kb on + strand, within Psyr_2968at 3559.915 kb on + strand, within Psyr_2968at 3559.915 kb on + strandat 3559.915 kb on + strand, within Psyr_2968at 3559.915 kb on + strand, within Psyr_2968at 3559.916 kb on - strand, within Psyr_2968at 3559.916 kb on - strand, within Psyr_2968at 3559.931 kb on - strand, within Psyr_2968at 3559.963 kb on + strand, within Psyr_2968at 3559.963 kb on + strand, within Psyr_2968at 3559.964 kb on - strand, within Psyr_2968at 3559.964 kb on - strand, within Psyr_2968at 3560.113 kb on + strand, within Psyr_2968at 3560.114 kb on - strand, within Psyr_2968at 3560.114 kb on - strand, within Psyr_2968at 3560.114 kb on - strand, within Psyr_2968at 3560.114 kb on - strand, within Psyr_2968at 3560.230 kb on + strand, within Psyr_2968at 3560.231 kb on - strand, within Psyr_2968at 3560.251 kb on + strand, within Psyr_2968at 3560.335 kb on + strand, within Psyr_2968at 3560.335 kb on + strand, within Psyr_2968at 3560.336 kb on - strand, within Psyr_2968at 3560.734 kb on + strandat 3560.748 kb on + strandat 3560.749 kb on - strandat 3560.752 kb on + strandat 3560.753 kb on - strandat 3560.888 kb on - strandat 3560.952 kb on + strandat 3560.952 kb on + strandat 3560.952 kb on + strandat 3560.952 kb on + strandat 3560.953 kb on - strandat 3560.953 kb on - strandat 3561.011 kb on + strand, within Psyr_2969at 3561.248 kb on + strand, within Psyr_2969at 3561.248 kb on + strand, within Psyr_2969at 3561.249 kb on - strand, within Psyr_2969at 3561.249 kb on - strand, within Psyr_2969at 3561.250 kb on + strand, within Psyr_2969at 3561.250 kb on + strand, within Psyr_2969at 3561.250 kb on + strand, within Psyr_2969at 3561.250 kb on + strand, within Psyr_2969at 3561.251 kb on - strand, within Psyr_2969at 3561.251 kb on - strand, within Psyr_2969at 3561.251 kb on - strand, within Psyr_2969at 3561.306 kb on + strand, within Psyr_2969at 3561.307 kb on - strand, within Psyr_2969

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Fusaric 250 ug/ml
remove
3,556,813 - Psyr_2967 0.35 -1.3
3,557,009 - Psyr_2967 0.51 -2.1
3,557,014 + Psyr_2967 0.51 +1.7
3,557,014 + Psyr_2967 0.51 +1.0
3,557,015 - Psyr_2967 0.51 +0.6
3,557,015 - Psyr_2967 0.51 +0.9
3,557,015 - Psyr_2967 0.51 +1.2
3,557,015 - Psyr_2967 0.51 +2.0
3,557,015 - Psyr_2967 0.51 -0.9
3,557,015 - Psyr_2967 0.51 +1.1
3,557,048 - Psyr_2967 0.54 +0.8
3,557,048 - Psyr_2967 0.54 -0.8
3,557,095 + Psyr_2967 0.57 -1.0
3,557,096 - Psyr_2967 0.58 +2.3
3,557,237 - Psyr_2967 0.69 +0.9
3,557,269 + Psyr_2967 0.71 +0.2
3,557,270 - Psyr_2967 0.72 -0.2
3,557,270 - Psyr_2967 0.72 +0.6
3,557,270 - Psyr_2967 0.72 -0.4
3,557,655 + -1.2
3,557,656 - +0.8
3,557,869 + -0.5
3,557,869 + -0.6
3,557,869 + -0.9
3,557,869 + -1.7
3,557,869 + +1.6
3,557,869 + +0.1
3,557,869 + -1.4
3,557,869 + -0.3
3,557,869 + -0.6
3,557,869 + -0.3
3,557,869 + -0.5
3,557,870 - -0.9
3,557,870 - +1.8
3,557,870 - -0.5
3,557,870 - -0.5
3,557,870 - -1.2
3,557,870 - +0.0
3,558,097 + Psyr_2968 0.14 -1.3
3,558,098 - Psyr_2968 0.15 -1.2
3,558,109 + Psyr_2968 0.15 -0.6
3,558,109 + Psyr_2968 0.15 +2.1
3,558,110 - Psyr_2968 0.15 +0.1
3,558,188 - Psyr_2968 0.17 -0.4
3,558,560 + Psyr_2968 0.29 -0.5
3,558,561 - Psyr_2968 0.29 -0.4
3,558,561 - Psyr_2968 0.29 +0.1
3,558,561 - Psyr_2968 0.29 -1.8
3,558,610 + Psyr_2968 0.31 +0.2
3,558,696 - Psyr_2968 0.33 -0.3
3,558,795 + Psyr_2968 0.36 +0.6
3,558,795 + Psyr_2968 0.36 +0.5
3,558,795 + Psyr_2968 0.36 -2.3
3,558,795 + Psyr_2968 0.36 -0.5
3,558,795 + Psyr_2968 0.36 -0.6
3,558,795 + Psyr_2968 0.36 -0.1
3,558,795 + Psyr_2968 0.36 +0.1
3,558,795 + Psyr_2968 0.36 -0.6
3,558,795 + Psyr_2968 0.36 +0.0
3,558,795 + Psyr_2968 0.36 +0.8
3,558,795 + Psyr_2968 0.36 +0.2
3,558,795 + Psyr_2968 0.36 +0.1
3,558,796 - Psyr_2968 0.36 -1.5
3,558,796 - Psyr_2968 0.36 -0.8
3,558,796 - Psyr_2968 0.36 +0.2
3,558,796 - Psyr_2968 0.36 +0.5
3,558,796 - Psyr_2968 0.36 +0.4
3,558,796 - Psyr_2968 0.36 -1.1
3,558,796 - Psyr_2968 0.36 -1.6
3,558,796 - Psyr_2968 0.36 -1.1
3,559,015 - Psyr_2968 0.43 -2.7
3,559,039 + Psyr_2968 0.44 -1.1
3,559,039 + Psyr_2968 0.44 -0.5
3,559,039 + Psyr_2968 0.44 -1.8
3,559,039 + Psyr_2968 0.44 -1.3
3,559,040 - Psyr_2968 0.44 -1.3
3,559,040 - Psyr_2968 0.44 -0.0
3,559,040 - Psyr_2968 0.44 +0.4
3,559,040 - Psyr_2968 0.44 -0.1
3,559,041 + Psyr_2968 0.44 +0.8
3,559,041 + Psyr_2968 0.44 +0.3
3,559,041 + Psyr_2968 0.44 -0.8
3,559,241 - Psyr_2968 0.50 -1.4
3,559,372 + Psyr_2968 0.54 +0.3
3,559,372 + Psyr_2968 0.54 -0.8
3,559,373 - Psyr_2968 0.54 +0.5
3,559,645 + Psyr_2968 0.63 +1.1
3,559,645 + Psyr_2968 0.63 +1.2
3,559,645 + Psyr_2968 0.63 -1.8
3,559,645 + Psyr_2968 0.63 -1.0
3,559,645 + Psyr_2968 0.63 +1.2
3,559,646 - Psyr_2968 0.63 -1.1
3,559,646 - Psyr_2968 0.63 +0.3
3,559,747 + Psyr_2968 0.66 -0.0
3,559,816 + Psyr_2968 0.68 -0.0
3,559,829 + Psyr_2968 0.69 -1.2
3,559,829 + Psyr_2968 0.69 -0.8
3,559,829 + Psyr_2968 0.69 -1.5
3,559,915 + Psyr_2968 0.71 -0.6
3,559,915 + -0.7
3,559,915 + Psyr_2968 0.71 +0.5
3,559,915 + Psyr_2968 0.71 -1.0
3,559,916 - Psyr_2968 0.71 +0.2
3,559,916 - Psyr_2968 0.71 -2.2
3,559,931 - Psyr_2968 0.72 +0.2
3,559,963 + Psyr_2968 0.73 -1.5
3,559,963 + Psyr_2968 0.73 +1.5
3,559,964 - Psyr_2968 0.73 +1.0
3,559,964 - Psyr_2968 0.73 +0.1
3,560,113 + Psyr_2968 0.78 +0.5
3,560,114 - Psyr_2968 0.78 +0.2
3,560,114 - Psyr_2968 0.78 -1.1
3,560,114 - Psyr_2968 0.78 -0.2
3,560,114 - Psyr_2968 0.78 -0.5
3,560,230 + Psyr_2968 0.81 +0.6
3,560,231 - Psyr_2968 0.81 +0.1
3,560,251 + Psyr_2968 0.82 -0.5
3,560,335 + Psyr_2968 0.85 +0.2
3,560,335 + Psyr_2968 0.85 -0.9
3,560,336 - Psyr_2968 0.85 +0.8
3,560,734 + +0.1
3,560,748 + -1.1
3,560,749 - +0.5
3,560,752 + +0.1
3,560,753 - -0.5
3,560,888 - +0.5
3,560,952 + +0.2
3,560,952 + +1.1
3,560,952 + -2.1
3,560,952 + -1.1
3,560,953 - +0.7
3,560,953 - +1.0
3,561,011 + Psyr_2969 0.13 +1.3
3,561,248 + Psyr_2969 0.30 +1.0
3,561,248 + Psyr_2969 0.30 -0.5
3,561,249 - Psyr_2969 0.30 +0.1
3,561,249 - Psyr_2969 0.30 -0.3
3,561,250 + Psyr_2969 0.30 +1.5
3,561,250 + Psyr_2969 0.30 +0.5
3,561,250 + Psyr_2969 0.30 -0.1
3,561,250 + Psyr_2969 0.30 +0.0
3,561,251 - Psyr_2969 0.30 +1.2
3,561,251 - Psyr_2969 0.30 +0.3
3,561,251 - Psyr_2969 0.30 +0.9
3,561,306 + Psyr_2969 0.34 +0.3
3,561,307 - Psyr_2969 0.34 -0.9

Or see this region's nucleotide sequence