Experiment: KB with Fusaric 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2803 and Psyr_2804 are separated by 169 nucleotides Psyr_2804 and Psyr_2805 are separated by 125 nucleotides Psyr_2805 and Psyr_2806 overlap by 4 nucleotides Psyr_2806 and Psyr_2807 overlap by 1 nucleotides
Psyr_2803: Psyr_2803 - conserved hypothetical protein, at 3,382,523 to 3,382,894
_2803
Psyr_2804: Psyr_2804 - hypothetical protein, at 3,383,064 to 3,383,420
_2804
Psyr_2805: Psyr_2805 - hypothetical protein, at 3,383,546 to 3,384,127
_2805
Psyr_2806: Psyr_2806 - Bacteriophage Lambda NinG, at 3,384,124 to 3,384,708
_2806
Psyr_2807: Psyr_2807 - NinB, at 3,384,708 to 3,385,106
_2807
Position (kb)
3383
3384
3385 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3382.861 kb on + strand at 3382.861 kb on + strand at 3382.910 kb on - strand at 3382.951 kb on + strand at 3382.951 kb on + strand at 3382.951 kb on + strand at 3382.952 kb on - strand at 3382.955 kb on + strand at 3382.989 kb on + strand at 3382.990 kb on - strand at 3382.990 kb on - strand at 3382.990 kb on - strand at 3383.012 kb on + strand at 3383.041 kb on + strand at 3383.041 kb on + strand at 3383.042 kb on - strand at 3383.042 kb on - strand at 3383.128 kb on + strand, within Psyr_2804 at 3383.200 kb on - strand, within Psyr_2804 at 3383.200 kb on - strand, within Psyr_2804 at 3383.266 kb on + strand, within Psyr_2804 at 3383.283 kb on - strand, within Psyr_2804 at 3383.319 kb on - strand, within Psyr_2804 at 3383.319 kb on - strand, within Psyr_2804 at 3383.330 kb on - strand, within Psyr_2804 at 3383.400 kb on - strand at 3383.442 kb on + strand at 3383.561 kb on - strand at 3383.561 kb on - strand at 3383.568 kb on + strand at 3383.769 kb on + strand, within Psyr_2805 at 3383.769 kb on + strand, within Psyr_2805 at 3383.769 kb on + strand, within Psyr_2805 at 3383.769 kb on + strand, within Psyr_2805 at 3383.770 kb on - strand, within Psyr_2805 at 3383.770 kb on - strand, within Psyr_2805 at 3383.770 kb on - strand, within Psyr_2805 at 3383.786 kb on + strand, within Psyr_2805 at 3383.787 kb on - strand, within Psyr_2805 at 3383.802 kb on + strand, within Psyr_2805 at 3383.802 kb on + strand, within Psyr_2805 at 3383.802 kb on + strand, within Psyr_2805 at 3383.851 kb on + strand, within Psyr_2805 at 3383.851 kb on + strand, within Psyr_2805 at 3383.852 kb on - strand, within Psyr_2805 at 3383.852 kb on - strand, within Psyr_2805 at 3383.852 kb on - strand, within Psyr_2805 at 3383.852 kb on - strand, within Psyr_2805 at 3383.852 kb on - strand, within Psyr_2805 at 3383.852 kb on - strand, within Psyr_2805 at 3383.913 kb on + strand, within Psyr_2805 at 3383.913 kb on + strand, within Psyr_2805 at 3383.913 kb on + strand, within Psyr_2805 at 3383.913 kb on + strand, within Psyr_2805 at 3383.913 kb on + strand, within Psyr_2805 at 3383.914 kb on - strand, within Psyr_2805 at 3383.914 kb on - strand, within Psyr_2805 at 3383.914 kb on - strand, within Psyr_2805 at 3383.914 kb on - strand, within Psyr_2805 at 3383.914 kb on - strand, within Psyr_2805 at 3383.914 kb on - strand, within Psyr_2805 at 3383.914 kb on - strand, within Psyr_2805 at 3383.914 kb on - strand, within Psyr_2805 at 3383.919 kb on + strand, within Psyr_2805 at 3383.919 kb on + strand, within Psyr_2805 at 3383.919 kb on + strand, within Psyr_2805 at 3383.919 kb on + strand at 3383.919 kb on + strand, within Psyr_2805 at 3383.919 kb on + strand, within Psyr_2805 at 3383.920 kb on - strand, within Psyr_2805 at 3383.920 kb on - strand, within Psyr_2805 at 3383.920 kb on - strand, within Psyr_2805 at 3383.920 kb on - strand, within Psyr_2805 at 3383.936 kb on + strand, within Psyr_2805 at 3383.936 kb on + strand, within Psyr_2805 at 3383.936 kb on + strand, within Psyr_2805 at 3383.989 kb on + strand, within Psyr_2805 at 3384.084 kb on + strand at 3384.084 kb on + strand at 3384.084 kb on + strand at 3384.084 kb on + strand at 3384.085 kb on - strand at 3384.085 kb on - strand at 3384.168 kb on - strand at 3384.203 kb on + strand, within Psyr_2806 at 3384.203 kb on + strand, within Psyr_2806 at 3384.204 kb on - strand, within Psyr_2806 at 3384.204 kb on - strand, within Psyr_2806 at 3384.204 kb on - strand, within Psyr_2806 at 3384.331 kb on + strand, within Psyr_2806 at 3384.331 kb on + strand, within Psyr_2806 at 3384.332 kb on - strand, within Psyr_2806 at 3384.332 kb on - strand, within Psyr_2806 at 3384.332 kb on - strand, within Psyr_2806 at 3384.381 kb on - strand, within Psyr_2806 at 3385.021 kb on - strand, within Psyr_2807 at 3385.021 kb on - strand, within Psyr_2807 at 3385.083 kb on - strand at 3385.083 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Fusaric 250 ug/ml remove 3,382,861 + +0.1 3,382,861 + +1.0 3,382,910 - +0.2 3,382,951 + +1.4 3,382,951 + +0.4 3,382,951 + -1.9 3,382,952 - +0.5 3,382,955 + -0.5 3,382,989 + +0.8 3,382,990 - -2.6 3,382,990 - -1.2 3,382,990 - +1.0 3,383,012 + +1.0 3,383,041 + +0.8 3,383,041 + -0.4 3,383,042 - -0.1 3,383,042 - -2.4 3,383,128 + Psyr_2804 0.18 +1.8 3,383,200 - Psyr_2804 0.38 -0.5 3,383,200 - Psyr_2804 0.38 -1.9 3,383,266 + Psyr_2804 0.57 -1.4 3,383,283 - Psyr_2804 0.61 -0.1 3,383,319 - Psyr_2804 0.71 -0.5 3,383,319 - Psyr_2804 0.71 +0.6 3,383,330 - Psyr_2804 0.75 -0.2 3,383,400 - -0.2 3,383,442 + -0.8 3,383,561 - +0.7 3,383,561 - +1.2 3,383,568 + -0.5 3,383,769 + Psyr_2805 0.38 -1.1 3,383,769 + Psyr_2805 0.38 +2.5 3,383,769 + Psyr_2805 0.38 -0.5 3,383,769 + Psyr_2805 0.38 +0.1 3,383,770 - Psyr_2805 0.38 +1.3 3,383,770 - Psyr_2805 0.38 +0.2 3,383,770 - Psyr_2805 0.38 +0.4 3,383,786 + Psyr_2805 0.41 -0.1 3,383,787 - Psyr_2805 0.41 -0.2 3,383,802 + Psyr_2805 0.44 +1.3 3,383,802 + Psyr_2805 0.44 +0.3 3,383,802 + Psyr_2805 0.44 -0.1 3,383,851 + Psyr_2805 0.52 -0.2 3,383,851 + Psyr_2805 0.52 -0.5 3,383,852 - Psyr_2805 0.53 +0.2 3,383,852 - Psyr_2805 0.53 -0.5 3,383,852 - Psyr_2805 0.53 +0.3 3,383,852 - Psyr_2805 0.53 +0.4 3,383,852 - Psyr_2805 0.53 +3.0 3,383,852 - Psyr_2805 0.53 -0.5 3,383,913 + Psyr_2805 0.63 -0.8 3,383,913 + Psyr_2805 0.63 +0.9 3,383,913 + Psyr_2805 0.63 +1.0 3,383,913 + Psyr_2805 0.63 +0.9 3,383,913 + Psyr_2805 0.63 +0.8 3,383,914 - Psyr_2805 0.63 +0.5 3,383,914 - Psyr_2805 0.63 +0.3 3,383,914 - Psyr_2805 0.63 +0.6 3,383,914 - Psyr_2805 0.63 -2.5 3,383,914 - Psyr_2805 0.63 +0.2 3,383,914 - Psyr_2805 0.63 +0.6 3,383,914 - Psyr_2805 0.63 -0.7 3,383,914 - Psyr_2805 0.63 +1.1 3,383,919 + Psyr_2805 0.64 +0.1 3,383,919 + Psyr_2805 0.64 +0.8 3,383,919 + Psyr_2805 0.64 +0.2 3,383,919 + -1.1 3,383,919 + Psyr_2805 0.64 -0.9 3,383,919 + Psyr_2805 0.64 -0.9 3,383,920 - Psyr_2805 0.64 +0.5 3,383,920 - Psyr_2805 0.64 +1.1 3,383,920 - Psyr_2805 0.64 +0.2 3,383,920 - Psyr_2805 0.64 -0.0 3,383,936 + Psyr_2805 0.67 +1.2 3,383,936 + Psyr_2805 0.67 +0.2 3,383,936 + Psyr_2805 0.67 +0.1 3,383,989 + Psyr_2805 0.76 -1.0 3,384,084 + -0.8 3,384,084 + -0.2 3,384,084 + -0.7 3,384,084 + -1.9 3,384,085 - +0.6 3,384,085 - +2.0 3,384,168 - +0.8 3,384,203 + Psyr_2806 0.14 -0.4 3,384,203 + Psyr_2806 0.14 -0.8 3,384,204 - Psyr_2806 0.14 +0.9 3,384,204 - Psyr_2806 0.14 +1.0 3,384,204 - Psyr_2806 0.14 +1.1 3,384,331 + Psyr_2806 0.35 +0.8 3,384,331 + Psyr_2806 0.35 +2.6 3,384,332 - Psyr_2806 0.36 +0.7 3,384,332 - Psyr_2806 0.36 +0.3 3,384,332 - Psyr_2806 0.36 +0.4 3,384,381 - Psyr_2806 0.44 +0.7 3,385,021 - Psyr_2807 0.78 +2.0 3,385,021 - Psyr_2807 0.78 +0.7 3,385,083 - -1.7 3,385,083 - -1.7
Or see this region's nucleotide sequence