Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2681

Experiment: KB with Fusaric 250 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2679 and Psyr_2680 overlap by 1 nucleotidesPsyr_2680 and Psyr_2681 overlap by 23 nucleotidesPsyr_2681 and Psyr_2682 are separated by 57 nucleotides Psyr_2679: Psyr_2679 - Binding-protein-dependent transport systems inner membrane component, at 3,251,027 to 3,251,971 _2679 Psyr_2680: Psyr_2680 - Binding-protein-dependent transport systems inner membrane component, at 3,251,971 to 3,252,843 _2680 Psyr_2681: Psyr_2681 - gamma-glutamyltransferase 2, Threonine peptidase, MEROPS family T03, at 3,252,821 to 3,254,470 _2681 Psyr_2682: Psyr_2682 - methyl-accepting chemotaxis sensory transducer, at 3,254,528 to 3,256,699 _2682 Position (kb) 3252 3253 3254 3255Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 3251.861 kb on + strand, within Psyr_2679at 3252.063 kb on - strand, within Psyr_2680at 3252.181 kb on + strand, within Psyr_2680at 3252.182 kb on - strand, within Psyr_2680at 3252.182 kb on - strand, within Psyr_2680at 3252.233 kb on - strand, within Psyr_2680at 3252.319 kb on + strand, within Psyr_2680at 3252.575 kb on - strand, within Psyr_2680at 3252.575 kb on - strand, within Psyr_2680at 3252.715 kb on - strand, within Psyr_2680at 3252.775 kb on + strandat 3252.775 kb on + strandat 3252.775 kb on + strandat 3252.775 kb on + strandat 3252.775 kb on + strandat 3252.776 kb on - strandat 3252.776 kb on - strandat 3252.874 kb on + strandat 3252.874 kb on + strandat 3252.875 kb on - strandat 3252.875 kb on - strandat 3252.894 kb on - strandat 3252.894 kb on - strandat 3253.500 kb on - strand, within Psyr_2681at 3253.617 kb on - strand, within Psyr_2681at 3253.845 kb on - strand, within Psyr_2681at 3253.979 kb on + strand, within Psyr_2681at 3253.979 kb on + strand, within Psyr_2681at 3253.979 kb on + strand, within Psyr_2681at 3253.980 kb on - strand, within Psyr_2681at 3253.980 kb on - strand, within Psyr_2681at 3253.980 kb on - strand, within Psyr_2681at 3253.980 kb on - strand, within Psyr_2681at 3253.980 kb on - strandat 3253.980 kb on - strand, within Psyr_2681at 3253.980 kb on - strand, within Psyr_2681at 3253.980 kb on - strand, within Psyr_2681at 3253.980 kb on - strand, within Psyr_2681at 3254.075 kb on + strand, within Psyr_2681at 3254.075 kb on + strand, within Psyr_2681at 3254.076 kb on - strand, within Psyr_2681at 3254.076 kb on - strand, within Psyr_2681at 3254.076 kb on - strand, within Psyr_2681at 3254.076 kb on - strand, within Psyr_2681at 3254.076 kb on - strand, within Psyr_2681at 3254.104 kb on + strand, within Psyr_2681at 3254.399 kb on - strandat 3254.420 kb on + strandat 3254.420 kb on + strandat 3254.421 kb on - strandat 3254.465 kb on + strandat 3254.466 kb on - strandat 3254.466 kb on - strandat 3254.564 kb on + strandat 3254.565 kb on - strandat 3254.721 kb on + strandat 3254.722 kb on - strandat 3254.722 kb on - strandat 3254.722 kb on - strandat 3254.722 kb on - strandat 3254.824 kb on + strand, within Psyr_2682at 3254.824 kb on + strand, within Psyr_2682at 3254.824 kb on + strand, within Psyr_2682at 3254.825 kb on - strand, within Psyr_2682at 3254.825 kb on - strand, within Psyr_2682at 3254.891 kb on + strand, within Psyr_2682at 3254.891 kb on + strand, within Psyr_2682at 3254.891 kb on + strand, within Psyr_2682at 3254.891 kb on + strand, within Psyr_2682at 3254.892 kb on - strand, within Psyr_2682at 3254.892 kb on - strand, within Psyr_2682at 3254.892 kb on - strand, within Psyr_2682at 3254.892 kb on - strand, within Psyr_2682at 3254.989 kb on + strand, within Psyr_2682at 3254.989 kb on + strand, within Psyr_2682at 3254.990 kb on - strand, within Psyr_2682at 3254.990 kb on - strand, within Psyr_2682at 3255.034 kb on + strand, within Psyr_2682at 3255.058 kb on + strand, within Psyr_2682at 3255.058 kb on + strand, within Psyr_2682at 3255.058 kb on + strand, within Psyr_2682at 3255.442 kb on + strand, within Psyr_2682at 3255.462 kb on - strand, within Psyr_2682

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Fusaric 250 ug/ml
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3,251,861 + Psyr_2679 0.88 -1.9
3,252,063 - Psyr_2680 0.11 -0.2
3,252,181 + Psyr_2680 0.24 +0.9
3,252,182 - Psyr_2680 0.24 +2.0
3,252,182 - Psyr_2680 0.24 -1.7
3,252,233 - Psyr_2680 0.30 +2.1
3,252,319 + Psyr_2680 0.40 +0.8
3,252,575 - Psyr_2680 0.69 -0.1
3,252,575 - Psyr_2680 0.69 +2.0
3,252,715 - Psyr_2680 0.85 +0.5
3,252,775 + +1.0
3,252,775 + -0.9
3,252,775 + -0.2
3,252,775 + -0.8
3,252,775 + -0.0
3,252,776 - +0.6
3,252,776 - -0.4
3,252,874 + +1.2
3,252,874 + +0.0
3,252,875 - +1.0
3,252,875 - +0.4
3,252,894 - -1.6
3,252,894 - -2.4
3,253,500 - Psyr_2681 0.41 +0.4
3,253,617 - Psyr_2681 0.48 -0.2
3,253,845 - Psyr_2681 0.62 +0.8
3,253,979 + Psyr_2681 0.70 +0.0
3,253,979 + Psyr_2681 0.70 -0.1
3,253,979 + Psyr_2681 0.70 -0.4
3,253,980 - Psyr_2681 0.70 -0.1
3,253,980 - Psyr_2681 0.70 -1.2
3,253,980 - Psyr_2681 0.70 +0.2
3,253,980 - Psyr_2681 0.70 +0.2
3,253,980 - +0.6
3,253,980 - Psyr_2681 0.70 +0.6
3,253,980 - Psyr_2681 0.70 -0.4
3,253,980 - Psyr_2681 0.70 +1.2
3,253,980 - Psyr_2681 0.70 -1.1
3,254,075 + Psyr_2681 0.76 +0.2
3,254,075 + Psyr_2681 0.76 -0.4
3,254,076 - Psyr_2681 0.76 +0.7
3,254,076 - Psyr_2681 0.76 +0.0
3,254,076 - Psyr_2681 0.76 -1.3
3,254,076 - Psyr_2681 0.76 -0.2
3,254,076 - Psyr_2681 0.76 +0.4
3,254,104 + Psyr_2681 0.78 -0.8
3,254,399 - +0.7
3,254,420 + +0.9
3,254,420 + -0.6
3,254,421 - -0.0
3,254,465 + -0.3
3,254,466 - -1.0
3,254,466 - -2.4
3,254,564 + -0.1
3,254,565 - +0.5
3,254,721 + -0.3
3,254,722 - -0.5
3,254,722 - +1.5
3,254,722 - +4.1
3,254,722 - +0.8
3,254,824 + Psyr_2682 0.14 +0.4
3,254,824 + Psyr_2682 0.14 +0.6
3,254,824 + Psyr_2682 0.14 -1.0
3,254,825 - Psyr_2682 0.14 +1.5
3,254,825 - Psyr_2682 0.14 +0.1
3,254,891 + Psyr_2682 0.17 +0.0
3,254,891 + Psyr_2682 0.17 +1.1
3,254,891 + Psyr_2682 0.17 -1.1
3,254,891 + Psyr_2682 0.17 -0.5
3,254,892 - Psyr_2682 0.17 +0.5
3,254,892 - Psyr_2682 0.17 +0.1
3,254,892 - Psyr_2682 0.17 -0.9
3,254,892 - Psyr_2682 0.17 -2.0
3,254,989 + Psyr_2682 0.21 -1.7
3,254,989 + Psyr_2682 0.21 -0.1
3,254,990 - Psyr_2682 0.21 +0.7
3,254,990 - Psyr_2682 0.21 -0.8
3,255,034 + Psyr_2682 0.23 +0.8
3,255,058 + Psyr_2682 0.24 -0.6
3,255,058 + Psyr_2682 0.24 -0.0
3,255,058 + Psyr_2682 0.24 +0.7
3,255,442 + Psyr_2682 0.42 -0.5
3,255,462 - Psyr_2682 0.43 +0.5

Or see this region's nucleotide sequence