Experiment: KB with Fusaric 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2522 and Psyr_2523 overlap by 4 nucleotides Psyr_2523 and Psyr_2524 overlap by 26 nucleotides Psyr_2524 and Psyr_2525 are separated by 4 nucleotides
Psyr_2522: Psyr_2522 - conserved hypothetical protein, at 2,930,230 to 2,931,660
_2522
Psyr_2523: Psyr_2523 - DNA polymerase III, alpha subunit, at 2,931,657 to 2,934,752
_2523
Psyr_2524: Psyr_2524 - conserved hypothetical protein, at 2,934,727 to 2,935,659
_2524
Psyr_2525: Psyr_2525 - Mg2+ transporter protein, CorA-like protein, at 2,935,664 to 2,936,593
_2525
Position (kb)
2931
2932
2933
2934
2935 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2930.884 kb on - strand, within Psyr_2522 at 2930.884 kb on - strand, within Psyr_2522 at 2930.945 kb on + strand, within Psyr_2522 at 2930.945 kb on + strand, within Psyr_2522 at 2930.946 kb on - strand, within Psyr_2522 at 2930.946 kb on - strand, within Psyr_2522 at 2930.946 kb on - strand, within Psyr_2522 at 2930.946 kb on - strand, within Psyr_2522 at 2930.946 kb on - strand, within Psyr_2522 at 2930.946 kb on - strand, within Psyr_2522 at 2930.946 kb on - strand, within Psyr_2522 at 2930.946 kb on - strand, within Psyr_2522 at 2931.417 kb on + strand, within Psyr_2522 at 2931.418 kb on - strand, within Psyr_2522 at 2931.565 kb on + strand at 2931.568 kb on + strand at 2931.568 kb on + strand at 2931.569 kb on - strand at 2931.569 kb on - strand at 2931.806 kb on - strand at 2931.916 kb on - strand at 2931.973 kb on - strand, within Psyr_2523 at 2932.389 kb on - strand, within Psyr_2523 at 2932.428 kb on + strand, within Psyr_2523 at 2932.428 kb on + strand, within Psyr_2523 at 2932.428 kb on + strand, within Psyr_2523 at 2932.429 kb on - strand, within Psyr_2523 at 2932.429 kb on - strand, within Psyr_2523 at 2932.429 kb on - strand, within Psyr_2523 at 2932.429 kb on - strand, within Psyr_2523 at 2932.470 kb on - strand, within Psyr_2523 at 2932.470 kb on - strand, within Psyr_2523 at 2932.596 kb on + strand, within Psyr_2523 at 2932.597 kb on - strand, within Psyr_2523 at 2932.597 kb on - strand, within Psyr_2523 at 2932.597 kb on - strand, within Psyr_2523 at 2932.689 kb on + strand, within Psyr_2523 at 2932.824 kb on + strand, within Psyr_2523 at 2932.824 kb on + strand, within Psyr_2523 at 2932.824 kb on + strand, within Psyr_2523 at 2932.824 kb on + strand, within Psyr_2523 at 2932.881 kb on + strand, within Psyr_2523 at 2932.881 kb on + strand, within Psyr_2523 at 2932.881 kb on + strand, within Psyr_2523 at 2932.881 kb on + strand, within Psyr_2523 at 2932.881 kb on + strand, within Psyr_2523 at 2932.882 kb on - strand, within Psyr_2523 at 2932.882 kb on - strand, within Psyr_2523 at 2932.882 kb on - strand, within Psyr_2523 at 2932.882 kb on - strand, within Psyr_2523 at 2932.882 kb on - strand, within Psyr_2523 at 2932.882 kb on - strand, within Psyr_2523 at 2933.505 kb on + strand, within Psyr_2523 at 2933.660 kb on - strand, within Psyr_2523 at 2933.660 kb on - strand, within Psyr_2523 at 2933.845 kb on - strand, within Psyr_2523 at 2933.922 kb on + strand, within Psyr_2523 at 2933.922 kb on + strand, within Psyr_2523 at 2933.922 kb on + strand, within Psyr_2523 at 2933.922 kb on + strand, within Psyr_2523 at 2933.922 kb on + strand, within Psyr_2523 at 2933.923 kb on - strand, within Psyr_2523 at 2933.923 kb on - strand, within Psyr_2523 at 2933.923 kb on - strand, within Psyr_2523 at 2934.697 kb on - strand at 2934.782 kb on + strand at 2934.808 kb on - strand at 2934.808 kb on - strand at 2934.808 kb on - strand at 2934.808 kb on - strand at 2934.811 kb on + strand at 2934.811 kb on + strand at 2934.811 kb on + strand at 2934.811 kb on + strand at 2934.812 kb on - strand at 2934.812 kb on - strand at 2934.812 kb on - strand at 2934.812 kb on - strand at 2934.877 kb on + strand, within Psyr_2524 at 2935.235 kb on - strand, within Psyr_2524 at 2935.235 kb on - strand, within Psyr_2524 at 2935.384 kb on + strand, within Psyr_2524 at 2935.385 kb on - strand, within Psyr_2524 at 2935.385 kb on - strand, within Psyr_2524 at 2935.385 kb on - strand, within Psyr_2524 at 2935.385 kb on - strand, within Psyr_2524 at 2935.385 kb on - strand, within Psyr_2524 at 2935.385 kb on - strand, within Psyr_2524 at 2935.555 kb on + strand, within Psyr_2524 at 2935.555 kb on + strand, within Psyr_2524 at 2935.555 kb on + strand, within Psyr_2524 at 2935.556 kb on - strand, within Psyr_2524 at 2935.556 kb on - strand, within Psyr_2524 at 2935.556 kb on - strand, within Psyr_2524 at 2935.609 kb on + strand at 2935.609 kb on + strand at 2935.612 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Fusaric 250 ug/ml remove 2,930,884 - Psyr_2522 0.46 +0.9 2,930,884 - Psyr_2522 0.46 -1.0 2,930,945 + Psyr_2522 0.50 +0.1 2,930,945 + Psyr_2522 0.50 +0.2 2,930,946 - Psyr_2522 0.50 -0.1 2,930,946 - Psyr_2522 0.50 +1.9 2,930,946 - Psyr_2522 0.50 -0.8 2,930,946 - Psyr_2522 0.50 -0.3 2,930,946 - Psyr_2522 0.50 +0.1 2,930,946 - Psyr_2522 0.50 +0.1 2,930,946 - Psyr_2522 0.50 -1.5 2,930,946 - Psyr_2522 0.50 -0.0 2,931,417 + Psyr_2522 0.83 +1.5 2,931,418 - Psyr_2522 0.83 +0.6 2,931,565 + -1.6 2,931,568 + +0.6 2,931,568 + +0.9 2,931,569 - -0.9 2,931,569 - -0.4 2,931,806 - +2.4 2,931,916 - +0.2 2,931,973 - Psyr_2523 0.10 -0.0 2,932,389 - Psyr_2523 0.24 -1.5 2,932,428 + Psyr_2523 0.25 +0.6 2,932,428 + Psyr_2523 0.25 +1.2 2,932,428 + Psyr_2523 0.25 +1.8 2,932,429 - Psyr_2523 0.25 +0.6 2,932,429 - Psyr_2523 0.25 +0.8 2,932,429 - Psyr_2523 0.25 +0.6 2,932,429 - Psyr_2523 0.25 -1.9 2,932,470 - Psyr_2523 0.26 +0.1 2,932,470 - Psyr_2523 0.26 -0.3 2,932,596 + Psyr_2523 0.30 -0.0 2,932,597 - Psyr_2523 0.30 +0.9 2,932,597 - Psyr_2523 0.30 -0.6 2,932,597 - Psyr_2523 0.30 +0.1 2,932,689 + Psyr_2523 0.33 +0.5 2,932,824 + Psyr_2523 0.38 -1.1 2,932,824 + Psyr_2523 0.38 +0.7 2,932,824 + Psyr_2523 0.38 -0.3 2,932,824 + Psyr_2523 0.38 -2.6 2,932,881 + Psyr_2523 0.40 +0.4 2,932,881 + Psyr_2523 0.40 +3.2 2,932,881 + Psyr_2523 0.40 +0.4 2,932,881 + Psyr_2523 0.40 +1.2 2,932,881 + Psyr_2523 0.40 +0.2 2,932,882 - Psyr_2523 0.40 +3.6 2,932,882 - Psyr_2523 0.40 -0.4 2,932,882 - Psyr_2523 0.40 +1.7 2,932,882 - Psyr_2523 0.40 +0.6 2,932,882 - Psyr_2523 0.40 +2.3 2,932,882 - Psyr_2523 0.40 +0.9 2,933,505 + Psyr_2523 0.60 +0.7 2,933,660 - Psyr_2523 0.65 +0.2 2,933,660 - Psyr_2523 0.65 +0.2 2,933,845 - Psyr_2523 0.71 +0.6 2,933,922 + Psyr_2523 0.73 +1.2 2,933,922 + Psyr_2523 0.73 +0.6 2,933,922 + Psyr_2523 0.73 -0.8 2,933,922 + Psyr_2523 0.73 +0.7 2,933,922 + Psyr_2523 0.73 +0.8 2,933,923 - Psyr_2523 0.73 -0.1 2,933,923 - Psyr_2523 0.73 +0.2 2,933,923 - Psyr_2523 0.73 +2.1 2,934,697 - -2.0 2,934,782 + -1.0 2,934,808 - -2.0 2,934,808 - +0.4 2,934,808 - +0.5 2,934,808 - -0.4 2,934,811 + -1.8 2,934,811 + +0.7 2,934,811 + -1.5 2,934,811 + -0.5 2,934,812 - +0.4 2,934,812 - +0.6 2,934,812 - +0.2 2,934,812 - -1.3 2,934,877 + Psyr_2524 0.16 -1.3 2,935,235 - Psyr_2524 0.54 -0.1 2,935,235 - Psyr_2524 0.54 +1.9 2,935,384 + Psyr_2524 0.70 +1.4 2,935,385 - Psyr_2524 0.71 +0.6 2,935,385 - Psyr_2524 0.71 +0.2 2,935,385 - Psyr_2524 0.71 +1.0 2,935,385 - Psyr_2524 0.71 +0.2 2,935,385 - Psyr_2524 0.71 -0.0 2,935,385 - Psyr_2524 0.71 +0.6 2,935,555 + Psyr_2524 0.89 -1.2 2,935,555 + Psyr_2524 0.89 -1.0 2,935,555 + Psyr_2524 0.89 -0.0 2,935,556 - Psyr_2524 0.89 +0.7 2,935,556 - Psyr_2524 0.89 +1.7 2,935,556 - Psyr_2524 0.89 -0.2 2,935,609 + -0.8 2,935,609 + +1.2 2,935,612 - +0.6
Or see this region's nucleotide sequence