Experiment: KB with Fusaric 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1969 and Psyr_1970 are separated by 0 nucleotides Psyr_1970 and Psyr_1971 are separated by 186 nucleotides
Psyr_1969: Psyr_1969 - ABC transporter:Protein of unknown function DUF214, at 2,282,501 to 2,284,474
_1969
Psyr_1970: Psyr_1970 - Secretion protein HlyD, at 2,284,475 to 2,285,647
_1970
Psyr_1971: Psyr_1971 - Peptidase S45, penicillin amidase, at 2,285,834 to 2,288,173
_1971
Position (kb)
2284
2285
2286 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2283.501 kb on + strand, within Psyr_1969 at 2283.502 kb on - strand, within Psyr_1969 at 2283.502 kb on - strand, within Psyr_1969 at 2284.131 kb on + strand, within Psyr_1969 at 2284.275 kb on + strand, within Psyr_1969 at 2284.275 kb on + strand at 2284.275 kb on + strand, within Psyr_1969 at 2284.275 kb on + strand, within Psyr_1969 at 2284.276 kb on - strand, within Psyr_1969 at 2284.432 kb on - strand at 2284.538 kb on + strand at 2284.744 kb on + strand, within Psyr_1970 at 2284.767 kb on + strand, within Psyr_1970 at 2284.767 kb on + strand, within Psyr_1970 at 2284.768 kb on - strand, within Psyr_1970 at 2284.768 kb on - strand, within Psyr_1970 at 2284.917 kb on + strand, within Psyr_1970 at 2284.918 kb on - strand, within Psyr_1970 at 2285.092 kb on + strand, within Psyr_1970 at 2285.093 kb on - strand, within Psyr_1970 at 2285.100 kb on + strand, within Psyr_1970 at 2285.466 kb on + strand, within Psyr_1970 at 2285.467 kb on - strand, within Psyr_1970 at 2285.708 kb on + strand at 2286.230 kb on + strand, within Psyr_1971 at 2286.230 kb on + strand, within Psyr_1971 at 2286.519 kb on + strand, within Psyr_1971 at 2286.519 kb on + strand, within Psyr_1971 at 2286.519 kb on + strand, within Psyr_1971
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Fusaric 250 ug/ml remove 2,283,501 + Psyr_1969 0.51 +0.0 2,283,502 - Psyr_1969 0.51 -0.6 2,283,502 - Psyr_1969 0.51 -3.2 2,284,131 + Psyr_1969 0.83 -0.5 2,284,275 + Psyr_1969 0.90 -1.5 2,284,275 + +0.5 2,284,275 + Psyr_1969 0.90 -1.6 2,284,275 + Psyr_1969 0.90 -1.2 2,284,276 - Psyr_1969 0.90 -2.3 2,284,432 - -0.8 2,284,538 + -0.3 2,284,744 + Psyr_1970 0.23 -2.4 2,284,767 + Psyr_1970 0.25 -0.8 2,284,767 + Psyr_1970 0.25 -0.7 2,284,768 - Psyr_1970 0.25 +0.5 2,284,768 - Psyr_1970 0.25 -2.1 2,284,917 + Psyr_1970 0.38 -0.0 2,284,918 - Psyr_1970 0.38 -0.1 2,285,092 + Psyr_1970 0.53 +0.1 2,285,093 - Psyr_1970 0.53 +0.2 2,285,100 + Psyr_1970 0.53 +0.1 2,285,466 + Psyr_1970 0.84 +1.7 2,285,467 - Psyr_1970 0.85 -0.9 2,285,708 + -1.6 2,286,230 + Psyr_1971 0.17 +0.3 2,286,230 + Psyr_1971 0.17 +1.4 2,286,519 + Psyr_1971 0.29 +0.9 2,286,519 + Psyr_1971 0.29 +0.3 2,286,519 + Psyr_1971 0.29 +0.0
Or see this region's nucleotide sequence