Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1731

Experiment: KB with Fusaric 250 ug/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_1730 and Psyr_1731 are separated by 63 nucleotidesPsyr_1731 and Psyr_1732 are separated by 698 nucleotides Psyr_1730: Psyr_1730 - Secretion protein HlyD, at 1,963,800 to 1,965,008 _1730 Psyr_1731: Psyr_1731 - Drug resistance transporter EmrB/QacA subfamily, at 1,965,072 to 1,966,610 _1731 Psyr_1732: Psyr_1732 - UDP-2,3-diacylglucosamine hydrolase, at 1,967,309 to 1,968,055 _1732 Position (kb) 1965 1966 1967Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1964.163 kb on + strand, within Psyr_1730at 1964.165 kb on + strand, within Psyr_1730at 1964.235 kb on + strand, within Psyr_1730at 1964.235 kb on + strand, within Psyr_1730at 1964.235 kb on + strand, within Psyr_1730at 1964.235 kb on + strand, within Psyr_1730at 1964.235 kb on + strand, within Psyr_1730at 1964.235 kb on + strand, within Psyr_1730at 1964.235 kb on + strand, within Psyr_1730at 1964.235 kb on + strand, within Psyr_1730at 1964.235 kb on + strand, within Psyr_1730at 1964.235 kb on + strand, within Psyr_1730at 1964.235 kb on + strand, within Psyr_1730at 1964.236 kb on - strand, within Psyr_1730at 1964.236 kb on - strand, within Psyr_1730at 1964.236 kb on - strand, within Psyr_1730at 1964.236 kb on - strand, within Psyr_1730at 1964.236 kb on - strand, within Psyr_1730at 1964.236 kb on - strand, within Psyr_1730at 1964.236 kb on - strand, within Psyr_1730at 1964.236 kb on - strand, within Psyr_1730at 1964.236 kb on - strand, within Psyr_1730at 1964.236 kb on - strand, within Psyr_1730at 1964.236 kb on - strand, within Psyr_1730at 1964.236 kb on - strand, within Psyr_1730at 1964.236 kb on - strand, within Psyr_1730at 1964.236 kb on - strand, within Psyr_1730at 1964.236 kb on - strand, within Psyr_1730at 1964.236 kb on - strand, within Psyr_1730at 1964.236 kb on - strand, within Psyr_1730at 1964.436 kb on + strand, within Psyr_1730at 1964.643 kb on + strandat 1964.661 kb on + strand, within Psyr_1730at 1964.661 kb on + strand, within Psyr_1730at 1964.661 kb on + strand, within Psyr_1730at 1964.662 kb on - strand, within Psyr_1730at 1964.780 kb on + strand, within Psyr_1730at 1964.780 kb on + strand, within Psyr_1730at 1964.805 kb on + strand, within Psyr_1730at 1964.806 kb on - strand, within Psyr_1730at 1964.916 kb on + strandat 1964.916 kb on + strandat 1964.916 kb on + strandat 1964.917 kb on - strandat 1964.917 kb on - strandat 1964.917 kb on - strandat 1964.917 kb on - strandat 1964.917 kb on - strandat 1965.570 kb on + strand, within Psyr_1731at 1965.570 kb on + strand, within Psyr_1731at 1965.570 kb on + strand, within Psyr_1731at 1965.570 kb on + strand, within Psyr_1731at 1965.570 kb on + strand, within Psyr_1731at 1965.571 kb on - strand, within Psyr_1731at 1965.571 kb on - strand, within Psyr_1731at 1965.571 kb on - strand, within Psyr_1731at 1965.629 kb on - strand, within Psyr_1731at 1965.636 kb on - strand, within Psyr_1731at 1965.684 kb on + strand, within Psyr_1731at 1965.684 kb on + strand, within Psyr_1731at 1965.685 kb on - strand, within Psyr_1731at 1965.685 kb on - strand, within Psyr_1731at 1965.685 kb on - strand, within Psyr_1731at 1965.685 kb on - strand, within Psyr_1731at 1965.685 kb on - strand, within Psyr_1731at 1965.685 kb on - strand, within Psyr_1731at 1965.731 kb on - strand, within Psyr_1731at 1965.746 kb on + strand, within Psyr_1731at 1965.978 kb on + strand, within Psyr_1731at 1965.978 kb on + strand, within Psyr_1731at 1965.979 kb on - strand, within Psyr_1731at 1965.979 kb on - strand, within Psyr_1731at 1966.030 kb on + strand, within Psyr_1731at 1966.056 kb on + strand, within Psyr_1731at 1966.056 kb on + strand, within Psyr_1731at 1966.057 kb on - strand, within Psyr_1731at 1966.057 kb on - strand, within Psyr_1731at 1966.165 kb on + strand, within Psyr_1731at 1966.165 kb on + strand, within Psyr_1731at 1966.166 kb on - strand, within Psyr_1731at 1966.166 kb on - strand, within Psyr_1731at 1966.365 kb on + strand, within Psyr_1731at 1966.365 kb on + strand, within Psyr_1731at 1966.366 kb on - strand, within Psyr_1731at 1966.482 kb on + strandat 1966.482 kb on + strandat 1966.482 kb on + strandat 1966.482 kb on + strandat 1966.483 kb on - strandat 1966.483 kb on - strandat 1966.483 kb on - strandat 1966.503 kb on + strandat 1966.503 kb on + strandat 1966.504 kb on - strandat 1966.504 kb on - strandat 1966.504 kb on - strandat 1966.504 kb on - strandat 1966.504 kb on - strandat 1966.504 kb on - strandat 1966.504 kb on - strandat 1966.510 kb on - strandat 1966.609 kb on - strandat 1966.624 kb on + strandat 1966.840 kb on + strandat 1966.840 kb on + strandat 1966.840 kb on + strandat 1966.840 kb on + strandat 1966.840 kb on + strandat 1966.840 kb on + strandat 1966.841 kb on - strandat 1966.841 kb on - strandat 1966.841 kb on - strandat 1966.841 kb on - strandat 1966.897 kb on + strandat 1966.898 kb on - strandat 1967.116 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Fusaric 250 ug/ml
remove
1,964,163 + Psyr_1730 0.30 +0.2
1,964,165 + Psyr_1730 0.30 -0.6
1,964,235 + Psyr_1730 0.36 +0.9
1,964,235 + Psyr_1730 0.36 +1.1
1,964,235 + Psyr_1730 0.36 +0.4
1,964,235 + Psyr_1730 0.36 +1.5
1,964,235 + Psyr_1730 0.36 +0.2
1,964,235 + Psyr_1730 0.36 -0.7
1,964,235 + Psyr_1730 0.36 +0.3
1,964,235 + Psyr_1730 0.36 +0.5
1,964,235 + Psyr_1730 0.36 +0.8
1,964,235 + Psyr_1730 0.36 +0.0
1,964,235 + Psyr_1730 0.36 +1.9
1,964,236 - Psyr_1730 0.36 +0.6
1,964,236 - Psyr_1730 0.36 -3.7
1,964,236 - Psyr_1730 0.36 +0.4
1,964,236 - Psyr_1730 0.36 -0.2
1,964,236 - Psyr_1730 0.36 -0.4
1,964,236 - Psyr_1730 0.36 -0.4
1,964,236 - Psyr_1730 0.36 +1.0
1,964,236 - Psyr_1730 0.36 +0.2
1,964,236 - Psyr_1730 0.36 +1.2
1,964,236 - Psyr_1730 0.36 -0.6
1,964,236 - Psyr_1730 0.36 +0.5
1,964,236 - Psyr_1730 0.36 +1.2
1,964,236 - Psyr_1730 0.36 +1.0
1,964,236 - Psyr_1730 0.36 +0.9
1,964,236 - Psyr_1730 0.36 -0.8
1,964,236 - Psyr_1730 0.36 -0.2
1,964,236 - Psyr_1730 0.36 +0.6
1,964,436 + Psyr_1730 0.53 +0.1
1,964,643 + -0.5
1,964,661 + Psyr_1730 0.71 -1.1
1,964,661 + Psyr_1730 0.71 -0.1
1,964,661 + Psyr_1730 0.71 +0.1
1,964,662 - Psyr_1730 0.71 +0.8
1,964,780 + Psyr_1730 0.81 -0.5
1,964,780 + Psyr_1730 0.81 +0.9
1,964,805 + Psyr_1730 0.83 +0.9
1,964,806 - Psyr_1730 0.83 +1.0
1,964,916 + -0.6
1,964,916 + +1.6
1,964,916 + +1.8
1,964,917 - -0.9
1,964,917 - -2.6
1,964,917 - -0.0
1,964,917 - +1.1
1,964,917 - -0.1
1,965,570 + Psyr_1731 0.32 -2.1
1,965,570 + Psyr_1731 0.32 -1.3
1,965,570 + Psyr_1731 0.32 -0.5
1,965,570 + Psyr_1731 0.32 +0.6
1,965,570 + Psyr_1731 0.32 +0.1
1,965,571 - Psyr_1731 0.32 -0.3
1,965,571 - Psyr_1731 0.32 -3.0
1,965,571 - Psyr_1731 0.32 +0.1
1,965,629 - Psyr_1731 0.36 +2.1
1,965,636 - Psyr_1731 0.37 +0.2
1,965,684 + Psyr_1731 0.40 -0.5
1,965,684 + Psyr_1731 0.40 -1.7
1,965,685 - Psyr_1731 0.40 -0.1
1,965,685 - Psyr_1731 0.40 +0.0
1,965,685 - Psyr_1731 0.40 -0.5
1,965,685 - Psyr_1731 0.40 -0.2
1,965,685 - Psyr_1731 0.40 -1.8
1,965,685 - Psyr_1731 0.40 -2.3
1,965,731 - Psyr_1731 0.43 -0.8
1,965,746 + Psyr_1731 0.44 +0.8
1,965,978 + Psyr_1731 0.59 -0.3
1,965,978 + Psyr_1731 0.59 -1.1
1,965,979 - Psyr_1731 0.59 +0.5
1,965,979 - Psyr_1731 0.59 -0.8
1,966,030 + Psyr_1731 0.62 -2.1
1,966,056 + Psyr_1731 0.64 -0.3
1,966,056 + Psyr_1731 0.64 -1.6
1,966,057 - Psyr_1731 0.64 -1.3
1,966,057 - Psyr_1731 0.64 +1.0
1,966,165 + Psyr_1731 0.71 -2.4
1,966,165 + Psyr_1731 0.71 -0.4
1,966,166 - Psyr_1731 0.71 -0.6
1,966,166 - Psyr_1731 0.71 -1.1
1,966,365 + Psyr_1731 0.84 -2.2
1,966,365 + Psyr_1731 0.84 -0.1
1,966,366 - Psyr_1731 0.84 +0.3
1,966,482 + -3.1
1,966,482 + -0.2
1,966,482 + +1.1
1,966,482 + +1.5
1,966,483 - +0.2
1,966,483 - +1.1
1,966,483 - +0.0
1,966,503 + +0.0
1,966,503 + -0.2
1,966,504 - +0.4
1,966,504 - +0.9
1,966,504 - +0.3
1,966,504 - +1.2
1,966,504 - +1.2
1,966,504 - +1.0
1,966,504 - +0.3
1,966,510 - -0.3
1,966,609 - +1.1
1,966,624 + +1.3
1,966,840 + +0.7
1,966,840 + -0.3
1,966,840 + +0.2
1,966,840 + +0.5
1,966,840 + +0.8
1,966,840 + -0.6
1,966,841 - -0.3
1,966,841 - -0.6
1,966,841 - +0.9
1,966,841 - -0.2
1,966,897 + -0.3
1,966,898 - -0.1
1,967,116 - -0.2

Or see this region's nucleotide sequence