Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1553

Experiment: KB with Fusaric 250 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1552 and Psyr_1553 are separated by 602 nucleotidesPsyr_1553 and Psyr_1554 are separated by 424 nucleotides Psyr_1552: Psyr_1552 - CDS, at 1,745,098 to 1,745,496 _1552 Psyr_1553: Psyr_1553 - hypothetical protein, at 1,746,099 to 1,746,434 _1553 Psyr_1554: Psyr_1554 - hypothetical protein, at 1,746,859 to 1,747,890 _1554 Position (kb) 1746 1747Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1745.113 kb on + strandat 1745.114 kb on - strandat 1745.187 kb on + strand, within Psyr_1552at 1745.187 kb on + strand, within Psyr_1552at 1745.187 kb on + strand, within Psyr_1552at 1745.187 kb on + strand, within Psyr_1552at 1745.187 kb on + strand, within Psyr_1552at 1745.187 kb on + strand, within Psyr_1552at 1745.188 kb on - strand, within Psyr_1552at 1745.188 kb on - strand, within Psyr_1552at 1745.188 kb on - strand, within Psyr_1552at 1745.188 kb on - strand, within Psyr_1552at 1745.188 kb on - strand, within Psyr_1552at 1745.262 kb on + strand, within Psyr_1552at 1745.262 kb on + strand, within Psyr_1552at 1745.263 kb on - strand, within Psyr_1552at 1745.263 kb on - strand, within Psyr_1552at 1745.263 kb on - strand, within Psyr_1552at 1745.263 kb on - strand, within Psyr_1552at 1745.263 kb on - strand, within Psyr_1552at 1745.269 kb on + strand, within Psyr_1552at 1745.269 kb on + strand, within Psyr_1552at 1745.269 kb on + strand, within Psyr_1552at 1745.269 kb on + strand, within Psyr_1552at 1745.270 kb on - strand, within Psyr_1552at 1745.270 kb on - strand, within Psyr_1552at 1745.270 kb on - strand, within Psyr_1552at 1745.270 kb on - strand, within Psyr_1552at 1745.270 kb on - strand, within Psyr_1552at 1745.270 kb on - strand, within Psyr_1552at 1745.270 kb on - strand, within Psyr_1552at 1745.270 kb on - strand, within Psyr_1552at 1745.270 kb on - strand, within Psyr_1552at 1745.270 kb on - strand, within Psyr_1552at 1745.270 kb on - strand, within Psyr_1552at 1745.270 kb on - strand, within Psyr_1552at 1745.270 kb on - strand, within Psyr_1552at 1745.270 kb on - strand, within Psyr_1552at 1745.278 kb on - strand, within Psyr_1552at 1745.316 kb on + strand, within Psyr_1552at 1745.316 kb on + strand, within Psyr_1552at 1745.317 kb on - strand, within Psyr_1552at 1745.317 kb on - strand, within Psyr_1552at 1745.317 kb on - strand, within Psyr_1552at 1745.498 kb on + strandat 1745.498 kb on + strandat 1745.499 kb on - strandat 1745.499 kb on - strandat 1745.499 kb on - strandat 1745.551 kb on - strandat 1745.551 kb on - strandat 1745.551 kb on - strandat 1745.551 kb on - strandat 1745.584 kb on + strandat 1745.613 kb on + strandat 1745.613 kb on + strandat 1745.614 kb on - strandat 1745.655 kb on + strandat 1745.655 kb on + strandat 1745.700 kb on + strandat 1745.785 kb on - strandat 1745.875 kb on - strandat 1745.901 kb on + strandat 1745.950 kb on + strandat 1745.950 kb on + strandat 1745.950 kb on + strandat 1745.950 kb on + strandat 1745.950 kb on + strandat 1745.950 kb on + strandat 1745.950 kb on + strandat 1745.951 kb on - strandat 1745.951 kb on - strandat 1745.951 kb on - strandat 1745.951 kb on - strandat 1745.951 kb on - strandat 1746.053 kb on - strandat 1746.056 kb on - strandat 1746.056 kb on - strandat 1746.056 kb on - strandat 1746.056 kb on - strandat 1746.087 kb on + strandat 1746.110 kb on + strandat 1746.158 kb on + strand, within Psyr_1553at 1746.200 kb on + strand, within Psyr_1553at 1746.200 kb on + strand, within Psyr_1553at 1746.201 kb on - strand, within Psyr_1553at 1746.201 kb on - strand, within Psyr_1553at 1746.292 kb on + strand, within Psyr_1553at 1746.348 kb on - strand, within Psyr_1553at 1746.348 kb on - strand, within Psyr_1553at 1746.351 kb on + strand, within Psyr_1553at 1746.351 kb on + strand, within Psyr_1553at 1746.351 kb on + strand, within Psyr_1553at 1746.352 kb on - strand, within Psyr_1553at 1746.352 kb on - strand, within Psyr_1553at 1746.352 kb on - strand, within Psyr_1553at 1746.352 kb on - strand, within Psyr_1553at 1746.354 kb on - strand, within Psyr_1553at 1746.422 kb on + strandat 1746.423 kb on - strandat 1746.459 kb on + strandat 1746.470 kb on + strandat 1746.533 kb on + strandat 1746.534 kb on - strandat 1746.543 kb on - strandat 1746.620 kb on + strandat 1746.649 kb on + strandat 1746.650 kb on - strandat 1746.650 kb on - strandat 1746.650 kb on - strandat 1746.663 kb on + strandat 1746.694 kb on + strandat 1746.694 kb on + strandat 1746.718 kb on - strandat 1746.739 kb on + strandat 1746.741 kb on + strandat 1746.742 kb on - strandat 1746.780 kb on + strandat 1746.826 kb on + strandat 1746.830 kb on - strandat 1746.834 kb on - strandat 1746.861 kb on - strandat 1746.863 kb on + strandat 1746.863 kb on + strandat 1747.037 kb on - strand, within Psyr_1554at 1747.084 kb on - strand, within Psyr_1554at 1747.087 kb on - strand, within Psyr_1554at 1747.188 kb on + strand, within Psyr_1554at 1747.220 kb on + strand, within Psyr_1554at 1747.223 kb on - strand, within Psyr_1554

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Fusaric 250 ug/ml
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1,745,113 + -1.2
1,745,114 - -1.3
1,745,187 + Psyr_1552 0.22 -0.4
1,745,187 + Psyr_1552 0.22 +2.3
1,745,187 + Psyr_1552 0.22 -0.6
1,745,187 + Psyr_1552 0.22 -0.4
1,745,187 + Psyr_1552 0.22 -0.2
1,745,187 + Psyr_1552 0.22 +0.2
1,745,188 - Psyr_1552 0.23 -1.9
1,745,188 - Psyr_1552 0.23 -1.0
1,745,188 - Psyr_1552 0.23 +0.6
1,745,188 - Psyr_1552 0.23 +1.7
1,745,188 - Psyr_1552 0.23 -0.3
1,745,262 + Psyr_1552 0.41 -1.0
1,745,262 + Psyr_1552 0.41 -1.6
1,745,263 - Psyr_1552 0.41 +0.5
1,745,263 - Psyr_1552 0.41 +0.6
1,745,263 - Psyr_1552 0.41 -0.6
1,745,263 - Psyr_1552 0.41 -0.6
1,745,263 - Psyr_1552 0.41 -1.0
1,745,269 + Psyr_1552 0.43 +1.3
1,745,269 + Psyr_1552 0.43 -0.2
1,745,269 + Psyr_1552 0.43 +0.8
1,745,269 + Psyr_1552 0.43 +0.2
1,745,270 - Psyr_1552 0.43 -0.4
1,745,270 - Psyr_1552 0.43 -0.4
1,745,270 - Psyr_1552 0.43 -0.8
1,745,270 - Psyr_1552 0.43 +0.3
1,745,270 - Psyr_1552 0.43 -0.0
1,745,270 - Psyr_1552 0.43 +0.3
1,745,270 - Psyr_1552 0.43 -2.2
1,745,270 - Psyr_1552 0.43 +0.6
1,745,270 - Psyr_1552 0.43 -1.2
1,745,270 - Psyr_1552 0.43 -0.0
1,745,270 - Psyr_1552 0.43 -1.3
1,745,270 - Psyr_1552 0.43 -4.1
1,745,270 - Psyr_1552 0.43 -1.7
1,745,270 - Psyr_1552 0.43 +1.6
1,745,278 - Psyr_1552 0.45 -1.9
1,745,316 + Psyr_1552 0.55 +1.2
1,745,316 + Psyr_1552 0.55 +0.4
1,745,317 - Psyr_1552 0.55 -0.6
1,745,317 - Psyr_1552 0.55 -0.4
1,745,317 - Psyr_1552 0.55 -2.4
1,745,498 + +0.4
1,745,498 + -2.2
1,745,499 - -1.6
1,745,499 - +1.9
1,745,499 - -0.0
1,745,551 - +0.9
1,745,551 - +2.3
1,745,551 - -1.4
1,745,551 - -0.8
1,745,584 + +1.0
1,745,613 + -0.4
1,745,613 + +0.4
1,745,614 - +1.3
1,745,655 + +0.4
1,745,655 + -0.4
1,745,700 + +0.6
1,745,785 - -0.1
1,745,875 - +1.4
1,745,901 + +0.2
1,745,950 + -1.3
1,745,950 + +1.9
1,745,950 + +0.0
1,745,950 + +0.4
1,745,950 + +0.9
1,745,950 + -0.6
1,745,950 + -0.5
1,745,951 - +0.9
1,745,951 - -1.1
1,745,951 - -0.5
1,745,951 - +0.2
1,745,951 - +1.2
1,746,053 - -1.4
1,746,056 - +0.2
1,746,056 - -0.0
1,746,056 - -0.2
1,746,056 - -0.2
1,746,087 + +0.8
1,746,110 + +1.6
1,746,158 + Psyr_1553 0.18 +0.3
1,746,200 + Psyr_1553 0.30 -0.5
1,746,200 + Psyr_1553 0.30 -1.7
1,746,201 - Psyr_1553 0.30 -0.9
1,746,201 - Psyr_1553 0.30 -1.9
1,746,292 + Psyr_1553 0.57 -0.4
1,746,348 - Psyr_1553 0.74 -0.7
1,746,348 - Psyr_1553 0.74 -0.5
1,746,351 + Psyr_1553 0.75 -0.8
1,746,351 + Psyr_1553 0.75 +0.3
1,746,351 + Psyr_1553 0.75 -2.2
1,746,352 - Psyr_1553 0.75 -2.6
1,746,352 - Psyr_1553 0.75 -1.6
1,746,352 - Psyr_1553 0.75 -1.0
1,746,352 - Psyr_1553 0.75 -0.2
1,746,354 - Psyr_1553 0.76 -0.8
1,746,422 + +0.6
1,746,423 - +0.6
1,746,459 + -0.7
1,746,470 + -1.0
1,746,533 + -1.7
1,746,534 - -0.3
1,746,543 - -1.7
1,746,620 + +0.0
1,746,649 + +1.1
1,746,650 - -1.0
1,746,650 - +0.4
1,746,650 - -1.5
1,746,663 + +0.1
1,746,694 + +1.1
1,746,694 + +1.0
1,746,718 - -0.6
1,746,739 + +0.3
1,746,741 + -0.7
1,746,742 - -1.6
1,746,780 + +0.4
1,746,826 + -1.4
1,746,830 - +1.0
1,746,834 - +1.5
1,746,861 - -0.4
1,746,863 + +3.7
1,746,863 + +1.0
1,747,037 - Psyr_1554 0.17 +0.5
1,747,084 - Psyr_1554 0.22 -0.9
1,747,087 - Psyr_1554 0.22 -0.2
1,747,188 + Psyr_1554 0.32 -0.6
1,747,220 + Psyr_1554 0.35 +1.0
1,747,223 - Psyr_1554 0.35 -0.4

Or see this region's nucleotide sequence