Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1429

Experiment: KB with Fusaric 250 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1428 and Psyr_1429 are separated by 20 nucleotidesPsyr_1429 and Psyr_1430 overlap by 4 nucleotides Psyr_1428: Psyr_1428 - conserved hypothetical protein, at 1,616,775 to 1,618,142 _1428 Psyr_1429: Psyr_1429 - Protein of unknown function DUF1527, at 1,618,163 to 1,619,101 _1429 Psyr_1430: Psyr_1430 - Protein of unknown function DUF1525, at 1,619,098 to 1,619,571 _1430 Position (kb) 1618 1619 1620Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1617.253 kb on + strand, within Psyr_1428at 1617.254 kb on - strand, within Psyr_1428at 1617.365 kb on + strand, within Psyr_1428at 1617.366 kb on - strand, within Psyr_1428at 1617.366 kb on - strand, within Psyr_1428at 1617.366 kb on - strand, within Psyr_1428at 1617.366 kb on - strand, within Psyr_1428at 1617.425 kb on + strand, within Psyr_1428at 1617.426 kb on - strand, within Psyr_1428at 1617.426 kb on - strand, within Psyr_1428at 1617.426 kb on - strand, within Psyr_1428at 1617.437 kb on + strand, within Psyr_1428at 1617.438 kb on - strand, within Psyr_1428at 1617.438 kb on - strand, within Psyr_1428at 1617.438 kb on - strand, within Psyr_1428at 1617.470 kb on - strand, within Psyr_1428at 1617.482 kb on + strand, within Psyr_1428at 1617.492 kb on + strand, within Psyr_1428at 1617.493 kb on - strand, within Psyr_1428at 1617.493 kb on - strand, within Psyr_1428at 1617.493 kb on - strand, within Psyr_1428at 1617.493 kb on - strand, within Psyr_1428at 1617.493 kb on - strand, within Psyr_1428at 1617.493 kb on - strand, within Psyr_1428at 1617.503 kb on + strand, within Psyr_1428at 1617.504 kb on - strand, within Psyr_1428at 1617.504 kb on - strand, within Psyr_1428at 1617.504 kb on - strand, within Psyr_1428at 1617.504 kb on - strand, within Psyr_1428at 1617.504 kb on - strand, within Psyr_1428at 1617.530 kb on + strand, within Psyr_1428at 1617.530 kb on + strand, within Psyr_1428at 1617.531 kb on - strand, within Psyr_1428at 1617.531 kb on - strand, within Psyr_1428at 1617.531 kb on - strand, within Psyr_1428at 1617.531 kb on - strand, within Psyr_1428at 1617.632 kb on + strand, within Psyr_1428at 1617.633 kb on - strand, within Psyr_1428at 1617.772 kb on + strand, within Psyr_1428at 1617.772 kb on + strand, within Psyr_1428at 1617.810 kb on + strand, within Psyr_1428at 1617.811 kb on - strand, within Psyr_1428at 1617.911 kb on + strand, within Psyr_1428at 1617.911 kb on + strand, within Psyr_1428at 1617.912 kb on - strand, within Psyr_1428at 1617.912 kb on - strand, within Psyr_1428at 1617.965 kb on + strand, within Psyr_1428at 1617.966 kb on - strand, within Psyr_1428at 1618.019 kb on - strandat 1618.019 kb on - strandat 1618.119 kb on - strandat 1618.119 kb on - strandat 1618.142 kb on + strandat 1618.142 kb on + strandat 1618.142 kb on + strandat 1618.143 kb on - strandat 1618.143 kb on - strandat 1618.143 kb on - strandat 1618.143 kb on - strandat 1618.177 kb on + strandat 1618.177 kb on + strandat 1618.286 kb on + strand, within Psyr_1429at 1618.287 kb on - strand, within Psyr_1429at 1618.330 kb on + strand, within Psyr_1429at 1618.407 kb on + strand, within Psyr_1429at 1618.408 kb on - strand, within Psyr_1429at 1618.476 kb on + strand, within Psyr_1429at 1618.476 kb on + strand, within Psyr_1429at 1618.476 kb on + strand, within Psyr_1429at 1618.477 kb on - strand, within Psyr_1429at 1618.477 kb on - strand, within Psyr_1429at 1618.477 kb on - strand, within Psyr_1429at 1618.477 kb on - strand, within Psyr_1429at 1618.477 kb on - strand, within Psyr_1429at 1618.513 kb on - strand, within Psyr_1429at 1618.513 kb on - strand, within Psyr_1429at 1618.585 kb on - strand, within Psyr_1429at 1618.585 kb on - strand, within Psyr_1429at 1618.650 kb on + strand, within Psyr_1429at 1618.650 kb on + strand, within Psyr_1429at 1618.650 kb on + strand, within Psyr_1429at 1618.650 kb on + strand, within Psyr_1429at 1618.651 kb on - strand, within Psyr_1429at 1618.651 kb on - strand, within Psyr_1429at 1618.651 kb on - strand, within Psyr_1429at 1618.651 kb on - strand, within Psyr_1429at 1618.700 kb on - strand, within Psyr_1429at 1618.700 kb on - strand, within Psyr_1429at 1618.728 kb on - strand, within Psyr_1429at 1618.728 kb on - strand, within Psyr_1429at 1618.759 kb on + strand, within Psyr_1429at 1618.759 kb on + strand, within Psyr_1429at 1618.760 kb on - strand, within Psyr_1429at 1618.866 kb on + strand, within Psyr_1429at 1618.866 kb on + strand, within Psyr_1429at 1618.919 kb on + strand, within Psyr_1429at 1618.919 kb on + strand, within Psyr_1429at 1618.920 kb on - strand, within Psyr_1429at 1618.920 kb on - strand, within Psyr_1429at 1618.974 kb on + strand, within Psyr_1429at 1618.974 kb on + strand, within Psyr_1429at 1618.974 kb on + strand, within Psyr_1429at 1618.975 kb on - strand, within Psyr_1429at 1618.975 kb on - strand, within Psyr_1429at 1618.975 kb on - strand, within Psyr_1429at 1619.187 kb on + strand, within Psyr_1430at 1619.187 kb on + strand, within Psyr_1430at 1619.198 kb on + strand, within Psyr_1430at 1619.198 kb on + strand, within Psyr_1430at 1619.198 kb on + strand, within Psyr_1430at 1619.199 kb on - strand, within Psyr_1430at 1619.199 kb on - strand, within Psyr_1430at 1619.199 kb on - strand, within Psyr_1430at 1619.263 kb on + strand, within Psyr_1430at 1619.263 kb on + strand, within Psyr_1430at 1619.281 kb on + strand, within Psyr_1430at 1619.282 kb on - strand, within Psyr_1430at 1619.501 kb on - strand, within Psyr_1430at 1619.501 kb on - strand, within Psyr_1430at 1619.501 kb on - strand, within Psyr_1430at 1619.572 kb on + strandat 1619.572 kb on + strandat 1619.572 kb on + strandat 1619.573 kb on - strandat 1619.579 kb on + strandat 1619.579 kb on + strandat 1619.718 kb on + strandat 1619.718 kb on + strandat 1619.719 kb on - strandat 1619.722 kb on + strandat 1619.746 kb on + strandat 1619.746 kb on + strandat 1619.753 kb on - strandat 1619.803 kb on + strandat 1619.804 kb on - strandat 1619.804 kb on - strandat 1619.860 kb on + strandat 1619.860 kb on + strandat 1619.860 kb on + strandat 1619.860 kb on + strandat 1619.860 kb on + strandat 1619.860 kb on + strandat 1619.860 kb on + strandat 1619.860 kb on + strandat 1619.860 kb on + strandat 1619.861 kb on - strandat 1619.861 kb on - strandat 1619.861 kb on - strandat 1619.861 kb on - strandat 1619.861 kb on - strandat 1619.913 kb on - strandat 1619.954 kb on + strandat 1619.954 kb on + strandat 1619.954 kb on + strandat 1619.954 kb on + strandat 1619.954 kb on + strandat 1619.954 kb on + strandat 1619.955 kb on - strandat 1619.955 kb on - strandat 1619.955 kb on - strandat 1619.955 kb on - strandat 1619.956 kb on + strandat 1619.986 kb on - strandat 1620.048 kb on + strandat 1620.065 kb on + strandat 1620.065 kb on + strandat 1620.066 kb on - strandat 1620.066 kb on - strandat 1620.066 kb on - strandat 1620.092 kb on + strandat 1620.101 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Fusaric 250 ug/ml
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1,617,253 + Psyr_1428 0.35 -0.1
1,617,254 - Psyr_1428 0.35 +1.0
1,617,365 + Psyr_1428 0.43 -0.1
1,617,366 - Psyr_1428 0.43 -1.8
1,617,366 - Psyr_1428 0.43 -1.2
1,617,366 - Psyr_1428 0.43 -0.7
1,617,366 - Psyr_1428 0.43 -0.3
1,617,425 + Psyr_1428 0.48 +1.2
1,617,426 - Psyr_1428 0.48 +0.9
1,617,426 - Psyr_1428 0.48 +0.0
1,617,426 - Psyr_1428 0.48 -1.3
1,617,437 + Psyr_1428 0.48 +0.0
1,617,438 - Psyr_1428 0.48 -0.5
1,617,438 - Psyr_1428 0.48 -0.3
1,617,438 - Psyr_1428 0.48 -1.1
1,617,470 - Psyr_1428 0.51 -0.5
1,617,482 + Psyr_1428 0.52 -1.0
1,617,492 + Psyr_1428 0.52 -1.0
1,617,493 - Psyr_1428 0.52 -1.7
1,617,493 - Psyr_1428 0.52 +0.0
1,617,493 - Psyr_1428 0.52 +0.4
1,617,493 - Psyr_1428 0.52 +0.1
1,617,493 - Psyr_1428 0.52 +1.3
1,617,493 - Psyr_1428 0.52 -1.2
1,617,503 + Psyr_1428 0.53 -1.0
1,617,504 - Psyr_1428 0.53 +0.3
1,617,504 - Psyr_1428 0.53 +1.4
1,617,504 - Psyr_1428 0.53 +2.6
1,617,504 - Psyr_1428 0.53 -0.1
1,617,504 - Psyr_1428 0.53 -0.2
1,617,530 + Psyr_1428 0.55 -0.7
1,617,530 + Psyr_1428 0.55 +0.8
1,617,531 - Psyr_1428 0.55 -1.4
1,617,531 - Psyr_1428 0.55 -0.1
1,617,531 - Psyr_1428 0.55 +1.2
1,617,531 - Psyr_1428 0.55 -0.6
1,617,632 + Psyr_1428 0.63 -1.8
1,617,633 - Psyr_1428 0.63 +0.3
1,617,772 + Psyr_1428 0.73 -0.3
1,617,772 + Psyr_1428 0.73 +0.1
1,617,810 + Psyr_1428 0.76 -1.0
1,617,811 - Psyr_1428 0.76 +0.1
1,617,911 + Psyr_1428 0.83 -0.6
1,617,911 + Psyr_1428 0.83 +0.2
1,617,912 - Psyr_1428 0.83 +0.4
1,617,912 - Psyr_1428 0.83 -1.7
1,617,965 + Psyr_1428 0.87 -0.4
1,617,966 - Psyr_1428 0.87 -1.4
1,618,019 - +0.0
1,618,019 - -0.6
1,618,119 - +0.5
1,618,119 - -0.2
1,618,142 + -0.1
1,618,142 + -0.3
1,618,142 + +0.0
1,618,143 - +0.7
1,618,143 - -1.1
1,618,143 - -0.6
1,618,143 - -0.7
1,618,177 + +0.5
1,618,177 + +1.5
1,618,286 + Psyr_1429 0.13 -1.5
1,618,287 - Psyr_1429 0.13 +0.1
1,618,330 + Psyr_1429 0.18 -1.1
1,618,407 + Psyr_1429 0.26 +0.5
1,618,408 - Psyr_1429 0.26 +0.0
1,618,476 + Psyr_1429 0.33 -2.4
1,618,476 + Psyr_1429 0.33 -1.9
1,618,476 + Psyr_1429 0.33 -1.4
1,618,477 - Psyr_1429 0.33 +0.3
1,618,477 - Psyr_1429 0.33 +0.4
1,618,477 - Psyr_1429 0.33 -1.0
1,618,477 - Psyr_1429 0.33 -2.0
1,618,477 - Psyr_1429 0.33 +1.3
1,618,513 - Psyr_1429 0.37 +1.7
1,618,513 - Psyr_1429 0.37 +0.0
1,618,585 - Psyr_1429 0.45 +0.3
1,618,585 - Psyr_1429 0.45 -0.2
1,618,650 + Psyr_1429 0.52 -0.8
1,618,650 + Psyr_1429 0.52 -0.5
1,618,650 + Psyr_1429 0.52 -1.0
1,618,650 + Psyr_1429 0.52 +2.1
1,618,651 - Psyr_1429 0.52 +0.1
1,618,651 - Psyr_1429 0.52 +1.6
1,618,651 - Psyr_1429 0.52 -0.2
1,618,651 - Psyr_1429 0.52 -1.2
1,618,700 - Psyr_1429 0.57 -0.3
1,618,700 - Psyr_1429 0.57 +0.5
1,618,728 - Psyr_1429 0.60 +0.9
1,618,728 - Psyr_1429 0.60 +1.0
1,618,759 + Psyr_1429 0.63 -0.7
1,618,759 + Psyr_1429 0.63 -1.6
1,618,760 - Psyr_1429 0.64 +1.1
1,618,866 + Psyr_1429 0.75 +0.0
1,618,866 + Psyr_1429 0.75 -0.2
1,618,919 + Psyr_1429 0.81 -0.6
1,618,919 + Psyr_1429 0.81 -1.2
1,618,920 - Psyr_1429 0.81 +1.9
1,618,920 - Psyr_1429 0.81 +1.4
1,618,974 + Psyr_1429 0.86 -1.5
1,618,974 + Psyr_1429 0.86 -3.4
1,618,974 + Psyr_1429 0.86 +0.4
1,618,975 - Psyr_1429 0.86 -1.0
1,618,975 - Psyr_1429 0.86 -1.3
1,618,975 - Psyr_1429 0.86 +0.5
1,619,187 + Psyr_1430 0.19 -1.0
1,619,187 + Psyr_1430 0.19 +0.0
1,619,198 + Psyr_1430 0.21 +0.9
1,619,198 + Psyr_1430 0.21 +0.1
1,619,198 + Psyr_1430 0.21 -1.0
1,619,199 - Psyr_1430 0.21 +1.0
1,619,199 - Psyr_1430 0.21 -0.4
1,619,199 - Psyr_1430 0.21 -2.1
1,619,263 + Psyr_1430 0.35 +1.2
1,619,263 + Psyr_1430 0.35 +0.4
1,619,281 + Psyr_1430 0.39 +1.6
1,619,282 - Psyr_1430 0.39 +0.6
1,619,501 - Psyr_1430 0.85 +0.3
1,619,501 - Psyr_1430 0.85 -0.5
1,619,501 - Psyr_1430 0.85 +1.0
1,619,572 + -0.7
1,619,572 + +0.7
1,619,572 + +1.6
1,619,573 - +0.3
1,619,579 + +0.5
1,619,579 + -0.3
1,619,718 + +2.9
1,619,718 + +0.9
1,619,719 - -0.5
1,619,722 + +0.2
1,619,746 + -0.3
1,619,746 + +0.4
1,619,753 - -0.4
1,619,803 + -2.6
1,619,804 - -0.5
1,619,804 - -1.1
1,619,860 + +0.1
1,619,860 + +0.4
1,619,860 + +2.2
1,619,860 + +0.7
1,619,860 + -0.6
1,619,860 + +0.4
1,619,860 + +0.0
1,619,860 + +1.0
1,619,860 + +1.2
1,619,861 - -1.1
1,619,861 - -1.6
1,619,861 - +1.1
1,619,861 - +0.4
1,619,861 - -0.4
1,619,913 - -0.8
1,619,954 + +0.9
1,619,954 + -0.4
1,619,954 + +1.0
1,619,954 + -0.1
1,619,954 + -0.3
1,619,954 + +2.6
1,619,955 - -1.9
1,619,955 - -0.7
1,619,955 - -0.1
1,619,955 - -0.1
1,619,956 + +0.8
1,619,986 - -2.5
1,620,048 + +0.4
1,620,065 + +1.9
1,620,065 + +2.0
1,620,066 - +0.0
1,620,066 - +2.4
1,620,066 - +0.7
1,620,092 + -0.4
1,620,101 - -3.1

Or see this region's nucleotide sequence