Experiment: KB with Fusaric 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1309 and Psyr_1310 are separated by 223 nucleotides Psyr_1310 and Psyr_1311 are separated by 69 nucleotides
Psyr_1309: Psyr_1309 - response regulator receiver modulated diguanylate cyclase, at 1,486,002 to 1,487,006
_1309
Psyr_1310: Psyr_1310 - bacterial peptide chain release factor 2 (bRF-2), at 1,487,230 to 1,488,219
_1310
Psyr_1311: Psyr_1311 - Lysyl-tRNA synthetase, class-2, at 1,488,289 to 1,489,791
_1311
Position (kb) 1487
1488
1489 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1486.315 kb on + strand, within Psyr_1309 at 1486.350 kb on + strand, within Psyr_1309 at 1486.350 kb on + strand, within Psyr_1309 at 1486.350 kb on + strand, within Psyr_1309 at 1486.350 kb on + strand, within Psyr_1309 at 1486.413 kb on + strand, within Psyr_1309 at 1486.413 kb on + strand, within Psyr_1309 at 1486.414 kb on - strand, within Psyr_1309 at 1486.414 kb on - strand, within Psyr_1309 at 1486.414 kb on - strand, within Psyr_1309 at 1486.414 kb on - strand, within Psyr_1309 at 1486.414 kb on - strand, within Psyr_1309 at 1486.630 kb on - strand, within Psyr_1309 at 1486.630 kb on - strand, within Psyr_1309 at 1486.641 kb on + strand, within Psyr_1309 at 1486.642 kb on - strand, within Psyr_1309 at 1486.642 kb on - strand, within Psyr_1309 at 1486.642 kb on - strand, within Psyr_1309 at 1486.650 kb on - strand, within Psyr_1309 at 1486.706 kb on + strand, within Psyr_1309 at 1486.707 kb on - strand, within Psyr_1309 at 1486.841 kb on + strand, within Psyr_1309 at 1487.028 kb on + strand at 1487.029 kb on - strand at 1487.079 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Fusaric 250 ug/ml remove 1,486,315 + Psyr_1309 0.31 -3.1 1,486,350 + Psyr_1309 0.35 +0.9 1,486,350 + Psyr_1309 0.35 +1.2 1,486,350 + Psyr_1309 0.35 -0.6 1,486,350 + Psyr_1309 0.35 -0.8 1,486,413 + Psyr_1309 0.41 +0.0 1,486,413 + Psyr_1309 0.41 +0.0 1,486,414 - Psyr_1309 0.41 +1.0 1,486,414 - Psyr_1309 0.41 +1.0 1,486,414 - Psyr_1309 0.41 +1.6 1,486,414 - Psyr_1309 0.41 +1.6 1,486,414 - Psyr_1309 0.41 +1.3 1,486,630 - Psyr_1309 0.62 +3.6 1,486,630 - Psyr_1309 0.62 +1.2 1,486,641 + Psyr_1309 0.64 -0.4 1,486,642 - Psyr_1309 0.64 +0.3 1,486,642 - Psyr_1309 0.64 +0.9 1,486,642 - Psyr_1309 0.64 +2.4 1,486,650 - Psyr_1309 0.64 -0.7 1,486,706 + Psyr_1309 0.70 +1.6 1,486,707 - Psyr_1309 0.70 +0.4 1,486,841 + Psyr_1309 0.83 -3.3 1,487,028 + -0.8 1,487,029 - +0.4 1,487,079 + -0.4
Or see this region's nucleotide sequence