Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0760

Experiment: KB with Fusaric 250 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0759 and Psyr_0760 are separated by 30 nucleotidesPsyr_0760 and Psyr_0761 overlap by 4 nucleotidesPsyr_0761 and Psyr_0762 are separated by 21 nucleotides Psyr_0759: Psyr_0759 - carbohydrate ABC transporter ATP-binding protein, CUT1 family, at 864,581 to 865,723 _0759 Psyr_0760: Psyr_0760 - carbohydrate ABC transporter membrane protein 2, CUT1 family, at 865,754 to 866,596 _0760 Psyr_0761: Psyr_0761 - carbohydrate ABC transporter membrane protein 1, CUT1 family, at 866,593 to 867,555 _0761 Psyr_0762: Psyr_0762 - carbohydrate ABC transporter substrate-binding protein, CUT1 family, at 867,577 to 868,851 _0762 Position (kb) 865 866 867Strain fitness (log2 ratio) -2 -1 0 1 2 3at 864.795 kb on + strand, within Psyr_0759at 864.795 kb on + strand, within Psyr_0759at 864.795 kb on + strand, within Psyr_0759at 864.795 kb on + strand, within Psyr_0759at 864.795 kb on + strand, within Psyr_0759at 864.795 kb on + strand, within Psyr_0759at 864.795 kb on + strand, within Psyr_0759at 864.795 kb on + strand, within Psyr_0759at 864.795 kb on + strand, within Psyr_0759at 864.795 kb on + strand, within Psyr_0759at 864.795 kb on + strand, within Psyr_0759at 864.795 kb on + strand, within Psyr_0759at 864.796 kb on - strand, within Psyr_0759at 864.796 kb on - strand, within Psyr_0759at 864.796 kb on - strand, within Psyr_0759at 864.796 kb on - strand, within Psyr_0759at 864.796 kb on - strand, within Psyr_0759at 864.796 kb on - strand, within Psyr_0759at 864.796 kb on - strand, within Psyr_0759at 864.796 kb on - strand, within Psyr_0759at 864.796 kb on - strand, within Psyr_0759at 864.796 kb on - strand, within Psyr_0759at 864.796 kb on - strand, within Psyr_0759at 864.796 kb on - strand, within Psyr_0759at 864.796 kb on - strand, within Psyr_0759at 864.796 kb on - strand, within Psyr_0759at 864.796 kb on - strand, within Psyr_0759at 864.814 kb on - strand, within Psyr_0759at 864.814 kb on - strand, within Psyr_0759at 865.063 kb on - strand, within Psyr_0759at 865.063 kb on - strand, within Psyr_0759at 865.109 kb on + strand, within Psyr_0759at 865.109 kb on + strand, within Psyr_0759at 865.110 kb on - strand, within Psyr_0759at 865.110 kb on - strand, within Psyr_0759at 865.143 kb on - strand, within Psyr_0759at 865.161 kb on + strand, within Psyr_0759at 865.161 kb on + strand, within Psyr_0759at 865.161 kb on + strand, within Psyr_0759at 865.161 kb on + strand, within Psyr_0759at 865.161 kb on + strand, within Psyr_0759at 865.161 kb on + strand, within Psyr_0759at 865.161 kb on + strand, within Psyr_0759at 865.161 kb on + strand, within Psyr_0759at 865.161 kb on + strand, within Psyr_0759at 865.161 kb on + strand, within Psyr_0759at 865.161 kb on + strand, within Psyr_0759at 865.161 kb on + strand, within Psyr_0759at 865.161 kb on + strand, within Psyr_0759at 865.161 kb on + strand, within Psyr_0759at 865.161 kb on + strand, within Psyr_0759at 865.161 kb on + strand, within Psyr_0759at 865.161 kb on + strand, within Psyr_0759at 865.162 kb on - strand, within Psyr_0759at 865.162 kb on - strand, within Psyr_0759at 865.162 kb on - strand, within Psyr_0759at 865.162 kb on - strand, within Psyr_0759at 865.162 kb on - strand, within Psyr_0759at 865.162 kb on - strand, within Psyr_0759at 865.162 kb on - strand, within Psyr_0759at 865.162 kb on - strand, within Psyr_0759at 865.450 kb on - strand, within Psyr_0759at 865.476 kb on + strand, within Psyr_0759at 865.675 kb on + strandat 865.676 kb on - strandat 865.709 kb on + strandat 865.709 kb on + strandat 865.710 kb on - strandat 865.710 kb on - strandat 866.157 kb on + strand, within Psyr_0760at 866.157 kb on + strand, within Psyr_0760at 866.187 kb on + strand, within Psyr_0760at 866.187 kb on + strand, within Psyr_0760at 866.187 kb on + strand, within Psyr_0760at 866.187 kb on + strand, within Psyr_0760at 866.187 kb on + strand, within Psyr_0760at 866.187 kb on + strand, within Psyr_0760at 866.187 kb on + strand, within Psyr_0760at 866.187 kb on + strand, within Psyr_0760at 866.188 kb on - strand, within Psyr_0760at 866.188 kb on - strand, within Psyr_0760at 866.188 kb on - strand, within Psyr_0760at 866.188 kb on - strand, within Psyr_0760at 866.313 kb on + strand, within Psyr_0760at 866.314 kb on - strand, within Psyr_0760at 866.314 kb on - strand, within Psyr_0760at 866.314 kb on - strand, within Psyr_0760at 866.314 kb on - strand, within Psyr_0760at 866.421 kb on + strand, within Psyr_0760at 866.422 kb on - strand, within Psyr_0760at 866.451 kb on + strand, within Psyr_0760at 866.451 kb on + strand, within Psyr_0760at 866.451 kb on + strand, within Psyr_0760at 866.452 kb on - strand, within Psyr_0760at 866.502 kb on + strand, within Psyr_0760at 866.506 kb on - strand, within Psyr_0760at 866.506 kb on - strand, within Psyr_0760at 866.627 kb on + strandat 866.627 kb on + strandat 866.628 kb on - strandat 866.628 kb on - strandat 866.628 kb on - strandat 866.633 kb on + strandat 866.633 kb on + strandat 866.634 kb on - strandat 866.634 kb on - strandat 866.674 kb on - strandat 866.729 kb on + strand, within Psyr_0761at 866.730 kb on - strand, within Psyr_0761at 866.730 kb on - strand, within Psyr_0761at 866.730 kb on - strand, within Psyr_0761at 866.774 kb on + strand, within Psyr_0761at 866.774 kb on + strand, within Psyr_0761at 866.774 kb on + strand, within Psyr_0761at 866.774 kb on + strand, within Psyr_0761at 866.774 kb on + strand, within Psyr_0761at 866.774 kb on + strand, within Psyr_0761at 866.774 kb on + strand, within Psyr_0761at 866.774 kb on + strand, within Psyr_0761at 866.774 kb on + strand, within Psyr_0761at 866.775 kb on - strand, within Psyr_0761at 866.775 kb on - strand, within Psyr_0761at 866.775 kb on - strand, within Psyr_0761at 866.775 kb on - strand, within Psyr_0761at 866.775 kb on - strand, within Psyr_0761at 866.910 kb on - strand, within Psyr_0761at 867.254 kb on + strand, within Psyr_0761at 867.255 kb on - strand, within Psyr_0761at 867.332 kb on + strand, within Psyr_0761at 867.332 kb on + strand, within Psyr_0761at 867.332 kb on + strand, within Psyr_0761at 867.332 kb on + strand, within Psyr_0761at 867.333 kb on - strand, within Psyr_0761at 867.333 kb on - strand, within Psyr_0761at 867.333 kb on - strand, within Psyr_0761at 867.333 kb on - strand, within Psyr_0761at 867.493 kb on + strandat 867.493 kb on + strandat 867.493 kb on + strandat 867.493 kb on + strandat 867.493 kb on + strandat 867.493 kb on + strandat 867.494 kb on - strandat 867.494 kb on - strandat 867.494 kb on - strandat 867.494 kb on - strandat 867.533 kb on + strandat 867.541 kb on - strandat 867.541 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Fusaric 250 ug/ml
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864,795 + Psyr_0759 0.19 +1.1
864,795 + Psyr_0759 0.19 +1.7
864,795 + Psyr_0759 0.19 +0.5
864,795 + Psyr_0759 0.19 +1.1
864,795 + Psyr_0759 0.19 +0.3
864,795 + Psyr_0759 0.19 -0.2
864,795 + Psyr_0759 0.19 -0.1
864,795 + Psyr_0759 0.19 +0.2
864,795 + Psyr_0759 0.19 -0.2
864,795 + Psyr_0759 0.19 +0.3
864,795 + Psyr_0759 0.19 +0.4
864,795 + Psyr_0759 0.19 +0.4
864,796 - Psyr_0759 0.19 -0.3
864,796 - Psyr_0759 0.19 +0.3
864,796 - Psyr_0759 0.19 -0.7
864,796 - Psyr_0759 0.19 +2.0
864,796 - Psyr_0759 0.19 +1.2
864,796 - Psyr_0759 0.19 -1.4
864,796 - Psyr_0759 0.19 -0.4
864,796 - Psyr_0759 0.19 -0.6
864,796 - Psyr_0759 0.19 +0.3
864,796 - Psyr_0759 0.19 +0.7
864,796 - Psyr_0759 0.19 -0.1
864,796 - Psyr_0759 0.19 +0.5
864,796 - Psyr_0759 0.19 -1.1
864,796 - Psyr_0759 0.19 -0.2
864,796 - Psyr_0759 0.19 -1.0
864,814 - Psyr_0759 0.20 -1.6
864,814 - Psyr_0759 0.20 -0.6
865,063 - Psyr_0759 0.42 -0.8
865,063 - Psyr_0759 0.42 -1.0
865,109 + Psyr_0759 0.46 -0.0
865,109 + Psyr_0759 0.46 +0.7
865,110 - Psyr_0759 0.46 +0.2
865,110 - Psyr_0759 0.46 +0.7
865,143 - Psyr_0759 0.49 +0.3
865,161 + Psyr_0759 0.51 -2.1
865,161 + Psyr_0759 0.51 -0.8
865,161 + Psyr_0759 0.51 +0.7
865,161 + Psyr_0759 0.51 +0.1
865,161 + Psyr_0759 0.51 -1.0
865,161 + Psyr_0759 0.51 +0.0
865,161 + Psyr_0759 0.51 -2.5
865,161 + Psyr_0759 0.51 +1.1
865,161 + Psyr_0759 0.51 +0.1
865,161 + Psyr_0759 0.51 -0.3
865,161 + Psyr_0759 0.51 -0.4
865,161 + Psyr_0759 0.51 -1.0
865,161 + Psyr_0759 0.51 -0.4
865,161 + Psyr_0759 0.51 -0.9
865,161 + Psyr_0759 0.51 +2.3
865,161 + Psyr_0759 0.51 +3.0
865,161 + Psyr_0759 0.51 -0.7
865,162 - Psyr_0759 0.51 -0.4
865,162 - Psyr_0759 0.51 -1.0
865,162 - Psyr_0759 0.51 +1.4
865,162 - Psyr_0759 0.51 +1.3
865,162 - Psyr_0759 0.51 +0.4
865,162 - Psyr_0759 0.51 +0.3
865,162 - Psyr_0759 0.51 +0.3
865,162 - Psyr_0759 0.51 -1.3
865,450 - Psyr_0759 0.76 +0.7
865,476 + Psyr_0759 0.78 -1.4
865,675 + -1.4
865,676 - -1.5
865,709 + -1.6
865,709 + -0.9
865,710 - +2.3
865,710 - -0.8
866,157 + Psyr_0760 0.48 -0.4
866,157 + Psyr_0760 0.48 -0.7
866,187 + Psyr_0760 0.51 -0.2
866,187 + Psyr_0760 0.51 -0.5
866,187 + Psyr_0760 0.51 +0.5
866,187 + Psyr_0760 0.51 +0.2
866,187 + Psyr_0760 0.51 +0.3
866,187 + Psyr_0760 0.51 -1.8
866,187 + Psyr_0760 0.51 +0.1
866,187 + Psyr_0760 0.51 +0.1
866,188 - Psyr_0760 0.51 +0.1
866,188 - Psyr_0760 0.51 -0.4
866,188 - Psyr_0760 0.51 +0.2
866,188 - Psyr_0760 0.51 -0.6
866,313 + Psyr_0760 0.66 +0.7
866,314 - Psyr_0760 0.66 +0.1
866,314 - Psyr_0760 0.66 -1.3
866,314 - Psyr_0760 0.66 -1.2
866,314 - Psyr_0760 0.66 -0.9
866,421 + Psyr_0760 0.79 -0.5
866,422 - Psyr_0760 0.79 +1.8
866,451 + Psyr_0760 0.83 -0.9
866,451 + Psyr_0760 0.83 -1.0
866,451 + Psyr_0760 0.83 -0.4
866,452 - Psyr_0760 0.83 +0.4
866,502 + Psyr_0760 0.89 -0.3
866,506 - Psyr_0760 0.89 +0.1
866,506 - Psyr_0760 0.89 -0.1
866,627 + -0.1
866,627 + -1.0
866,628 - -1.5
866,628 - -0.2
866,628 - -1.1
866,633 + +0.6
866,633 + -0.5
866,634 - -1.0
866,634 - -1.6
866,674 - -2.3
866,729 + Psyr_0761 0.14 -2.0
866,730 - Psyr_0761 0.14 -0.2
866,730 - Psyr_0761 0.14 +1.7
866,730 - Psyr_0761 0.14 +0.3
866,774 + Psyr_0761 0.19 +0.3
866,774 + Psyr_0761 0.19 -0.2
866,774 + Psyr_0761 0.19 +0.1
866,774 + Psyr_0761 0.19 -0.5
866,774 + Psyr_0761 0.19 +0.5
866,774 + Psyr_0761 0.19 -1.1
866,774 + Psyr_0761 0.19 -0.0
866,774 + Psyr_0761 0.19 -0.3
866,774 + Psyr_0761 0.19 -0.8
866,775 - Psyr_0761 0.19 -0.1
866,775 - Psyr_0761 0.19 +0.2
866,775 - Psyr_0761 0.19 +0.1
866,775 - Psyr_0761 0.19 -0.5
866,775 - Psyr_0761 0.19 +1.4
866,910 - Psyr_0761 0.33 -0.5
867,254 + Psyr_0761 0.69 +0.7
867,255 - Psyr_0761 0.69 -0.1
867,332 + Psyr_0761 0.77 +0.9
867,332 + Psyr_0761 0.77 +0.2
867,332 + Psyr_0761 0.77 +0.0
867,332 + Psyr_0761 0.77 +0.7
867,333 - Psyr_0761 0.77 -2.1
867,333 - Psyr_0761 0.77 +0.1
867,333 - Psyr_0761 0.77 +0.2
867,333 - Psyr_0761 0.77 +1.3
867,493 + +0.6
867,493 + -0.5
867,493 + +1.6
867,493 + -0.2
867,493 + +0.2
867,493 + +1.3
867,494 - +0.6
867,494 - -0.7
867,494 - +0.9
867,494 - +1.3
867,533 + -0.3
867,541 - +0.4
867,541 - +1.2

Or see this region's nucleotide sequence