Experiment: KB with Fusaric 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0735 and Psyr_0736 overlap by 14 nucleotides Psyr_0736 and Psyr_0737 are separated by 213 nucleotides Psyr_0737 and Psyr_0738 are separated by 794 nucleotides
Psyr_0735: Psyr_0735 - Peptidase S24, S26A and S26B, at 840,487 to 840,921
_0735
Psyr_0736: Psyr_0736 - umuC protein, at 840,908 to 841,153
_0736
Psyr_0737: Psyr_0737 - putative transmembrane protein, at 841,367 to 841,780
_0737
Psyr_0738: Psyr_0738 - type III effector protein AvrRpm1, at 842,575 to 843,261
_0738
Position (kb)
841
842 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 840.452 kb on + strand at 840.452 kb on + strand at 840.452 kb on + strand at 840.452 kb on + strand at 840.452 kb on + strand at 840.454 kb on + strand at 840.829 kb on - strand, within Psyr_0735 at 840.829 kb on - strand, within Psyr_0735 at 840.829 kb on - strand, within Psyr_0735 at 840.829 kb on - strand, within Psyr_0735 at 840.892 kb on + strand at 840.938 kb on - strand, within Psyr_0736 at 840.957 kb on - strand, within Psyr_0736 at 840.957 kb on - strand, within Psyr_0736 at 840.957 kb on - strand, within Psyr_0736 at 840.957 kb on - strand, within Psyr_0736 at 840.957 kb on - strand, within Psyr_0736 at 840.957 kb on - strand, within Psyr_0736 at 841.143 kb on - strand at 841.143 kb on - strand at 841.152 kb on - strand at 841.152 kb on - strand at 841.152 kb on - strand at 841.154 kb on + strand at 841.154 kb on + strand at 841.154 kb on + strand at 841.154 kb on + strand at 841.154 kb on + strand at 841.155 kb on - strand at 841.159 kb on + strand at 841.160 kb on - strand at 841.160 kb on - strand at 841.223 kb on + strand at 841.223 kb on + strand at 841.224 kb on - strand at 841.340 kb on - strand at 841.354 kb on + strand at 841.357 kb on + strand at 841.446 kb on - strand, within Psyr_0737 at 841.446 kb on - strand, within Psyr_0737 at 841.487 kb on - strand, within Psyr_0737 at 841.487 kb on - strand, within Psyr_0737 at 841.497 kb on + strand, within Psyr_0737 at 841.519 kb on + strand, within Psyr_0737 at 841.520 kb on - strand, within Psyr_0737 at 841.545 kb on - strand, within Psyr_0737 at 841.545 kb on - strand, within Psyr_0737 at 841.571 kb on - strand, within Psyr_0737 at 841.571 kb on - strand, within Psyr_0737 at 841.571 kb on - strand, within Psyr_0737 at 841.571 kb on - strand, within Psyr_0737 at 841.574 kb on + strand, within Psyr_0737 at 841.574 kb on + strand, within Psyr_0737 at 841.575 kb on - strand, within Psyr_0737 at 841.575 kb on - strand, within Psyr_0737 at 841.640 kb on - strand, within Psyr_0737 at 841.641 kb on + strand, within Psyr_0737 at 841.641 kb on + strand, within Psyr_0737 at 841.641 kb on + strand, within Psyr_0737 at 841.642 kb on - strand, within Psyr_0737 at 841.716 kb on + strand, within Psyr_0737 at 841.784 kb on - strand at 841.880 kb on + strand at 841.881 kb on - strand at 841.885 kb on - strand at 841.895 kb on - strand at 841.965 kb on - strand at 842.014 kb on + strand at 842.024 kb on + strand at 842.024 kb on + strand at 842.144 kb on - strand at 842.189 kb on + strand at 842.207 kb on - strand at 842.207 kb on - strand at 842.212 kb on - strand at 842.212 kb on - strand at 842.212 kb on - strand at 842.212 kb on - strand at 842.236 kb on + strand at 842.236 kb on + strand at 842.236 kb on + strand at 842.315 kb on + strand at 842.372 kb on + strand at 842.372 kb on + strand at 842.373 kb on - strand at 842.378 kb on - strand at 842.378 kb on - strand at 842.403 kb on + strand at 842.403 kb on + strand at 842.404 kb on - strand at 842.440 kb on + strand at 842.474 kb on + strand at 842.474 kb on + strand at 842.475 kb on - strand at 842.475 kb on - strand at 842.493 kb on + strand at 842.494 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Fusaric 250 ug/ml remove 840,452 + -1.5 840,452 + +1.1 840,452 + +0.7 840,452 + +0.1 840,452 + +0.2 840,454 + +0.6 840,829 - Psyr_0735 0.79 -1.9 840,829 - Psyr_0735 0.79 -0.2 840,829 - Psyr_0735 0.79 -1.3 840,829 - Psyr_0735 0.79 -0.8 840,892 + -0.7 840,938 - Psyr_0736 0.12 -1.6 840,957 - Psyr_0736 0.20 -0.3 840,957 - Psyr_0736 0.20 +0.0 840,957 - Psyr_0736 0.20 -0.0 840,957 - Psyr_0736 0.20 -0.8 840,957 - Psyr_0736 0.20 +0.7 840,957 - Psyr_0736 0.20 +0.5 841,143 - -1.0 841,143 - -1.7 841,152 - +0.1 841,152 - -3.6 841,152 - -0.4 841,154 + -0.7 841,154 + +0.7 841,154 + -0.9 841,154 + -1.0 841,154 + +1.2 841,155 - +0.7 841,159 + +0.4 841,160 - +0.6 841,160 - +0.6 841,223 + -0.0 841,223 + -2.0 841,224 - -0.2 841,340 - -0.9 841,354 + -3.7 841,357 + -0.4 841,446 - Psyr_0737 0.19 -0.0 841,446 - Psyr_0737 0.19 +1.7 841,487 - Psyr_0737 0.29 +0.2 841,487 - Psyr_0737 0.29 +0.5 841,497 + Psyr_0737 0.31 -1.5 841,519 + Psyr_0737 0.37 -1.5 841,520 - Psyr_0737 0.37 -0.2 841,545 - Psyr_0737 0.43 -0.6 841,545 - Psyr_0737 0.43 -1.1 841,571 - Psyr_0737 0.49 -0.9 841,571 - Psyr_0737 0.49 -1.4 841,571 - Psyr_0737 0.49 +0.7 841,571 - Psyr_0737 0.49 -0.4 841,574 + Psyr_0737 0.50 +0.7 841,574 + Psyr_0737 0.50 -3.2 841,575 - Psyr_0737 0.50 +1.4 841,575 - Psyr_0737 0.50 -0.2 841,640 - Psyr_0737 0.66 +0.7 841,641 + Psyr_0737 0.66 -1.6 841,641 + Psyr_0737 0.66 -0.9 841,641 + Psyr_0737 0.66 -1.0 841,642 - Psyr_0737 0.66 -0.4 841,716 + Psyr_0737 0.84 +0.1 841,784 - +0.7 841,880 + -0.3 841,881 - -1.2 841,885 - -0.9 841,895 - -0.6 841,965 - -0.9 842,014 + -0.5 842,024 + +0.8 842,024 + +0.0 842,144 - +0.6 842,189 + +1.3 842,207 - -0.5 842,207 - +2.0 842,212 - +0.6 842,212 - -1.7 842,212 - +0.5 842,212 - +0.7 842,236 + -0.6 842,236 + -1.7 842,236 + -0.7 842,315 + -1.6 842,372 + -0.4 842,372 + +0.6 842,373 - +0.1 842,378 - -2.0 842,378 - -1.0 842,403 + -0.1 842,403 + +0.4 842,404 - -1.1 842,440 + +1.1 842,474 + -2.7 842,474 + -0.6 842,475 - +2.2 842,475 - +0.7 842,493 + -0.3 842,494 - +0.5
Or see this region's nucleotide sequence