Experiment: KB with Fusaric 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0602 and Psyr_0603 are separated by 35 nucleotides Psyr_0603 and Psyr_0604 are separated by 72 nucleotides
Psyr_0602: Psyr_0602 - Short-chain dehydrogenase/reductase SDR, at 691,538 to 692,302
_0602
Psyr_0603: Psyr_0603 - N-acylglucosamine 2-epimerase, at 692,338 to 693,552
_0603
Psyr_0604: Psyr_0604 - 1-deoxy-D-xylulose-5-phosphate synthase, at 693,625 to 695,517
_0604
Position (kb) 692
693
694 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 691.433 kb on + strand at 691.434 kb on - strand at 691.434 kb on - strand at 691.494 kb on + strand at 691.494 kb on + strand at 691.494 kb on + strand at 691.495 kb on - strand at 691.495 kb on - strand at 691.551 kb on + strand at 691.551 kb on + strand at 691.551 kb on + strand at 691.552 kb on - strand at 691.552 kb on - strand at 691.552 kb on - strand at 691.552 kb on - strand at 691.552 kb on - strand at 691.552 kb on - strand at 691.552 kb on - strand at 691.552 kb on - strand at 691.696 kb on + strand, within Psyr_0602 at 691.696 kb on + strand, within Psyr_0602 at 691.713 kb on + strand, within Psyr_0602 at 691.713 kb on + strand, within Psyr_0602 at 691.713 kb on + strand, within Psyr_0602 at 691.713 kb on + strand, within Psyr_0602 at 691.713 kb on + strand, within Psyr_0602 at 691.713 kb on + strand, within Psyr_0602 at 691.714 kb on - strand, within Psyr_0602 at 691.714 kb on - strand, within Psyr_0602 at 691.714 kb on - strand, within Psyr_0602 at 691.714 kb on - strand, within Psyr_0602 at 691.714 kb on - strand, within Psyr_0602 at 691.714 kb on - strand, within Psyr_0602 at 691.883 kb on + strand, within Psyr_0602 at 691.883 kb on + strand, within Psyr_0602 at 691.883 kb on + strand, within Psyr_0602 at 691.883 kb on + strand, within Psyr_0602 at 691.883 kb on + strand, within Psyr_0602 at 691.884 kb on - strand, within Psyr_0602 at 691.884 kb on - strand at 691.967 kb on + strand, within Psyr_0602 at 691.974 kb on - strand, within Psyr_0602 at 691.992 kb on - strand, within Psyr_0602 at 692.138 kb on + strand, within Psyr_0602 at 692.138 kb on + strand, within Psyr_0602 at 692.138 kb on + strand, within Psyr_0602 at 692.139 kb on - strand, within Psyr_0602 at 692.139 kb on - strand, within Psyr_0602 at 692.139 kb on - strand, within Psyr_0602 at 692.139 kb on - strand, within Psyr_0602 at 692.150 kb on + strand, within Psyr_0602 at 692.150 kb on + strand, within Psyr_0602 at 692.150 kb on + strand, within Psyr_0602 at 692.151 kb on - strand, within Psyr_0602 at 692.151 kb on - strand, within Psyr_0602 at 692.151 kb on - strand, within Psyr_0602 at 692.411 kb on + strand at 692.412 kb on - strand at 692.412 kb on - strand at 692.412 kb on - strand at 692.412 kb on - strand at 692.412 kb on - strand at 692.412 kb on - strand at 692.412 kb on - strand at 692.586 kb on - strand, within Psyr_0603 at 692.586 kb on - strand, within Psyr_0603 at 692.604 kb on + strand, within Psyr_0603 at 692.605 kb on - strand, within Psyr_0603 at 692.693 kb on + strand, within Psyr_0603 at 692.871 kb on + strand, within Psyr_0603 at 693.015 kb on - strand, within Psyr_0603 at 693.107 kb on + strand, within Psyr_0603 at 693.126 kb on + strand, within Psyr_0603 at 693.143 kb on + strand, within Psyr_0603 at 693.144 kb on - strand, within Psyr_0603 at 693.191 kb on + strand, within Psyr_0603 at 693.191 kb on + strand, within Psyr_0603 at 693.192 kb on - strand, within Psyr_0603 at 693.384 kb on - strand, within Psyr_0603 at 693.555 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Fusaric 250 ug/ml remove 691,433 + +0.9 691,434 - +0.8 691,434 - +0.8 691,494 + -0.2 691,494 + -0.7 691,494 + -0.2 691,495 - +0.2 691,495 - -0.9 691,551 + -0.2 691,551 + +0.5 691,551 + -0.5 691,552 - +1.5 691,552 - -0.9 691,552 - -1.8 691,552 - +0.6 691,552 - -0.7 691,552 - +1.4 691,552 - +1.2 691,552 - +0.3 691,696 + Psyr_0602 0.21 -1.2 691,696 + Psyr_0602 0.21 -0.7 691,713 + Psyr_0602 0.23 +0.6 691,713 + Psyr_0602 0.23 +0.0 691,713 + Psyr_0602 0.23 -1.2 691,713 + Psyr_0602 0.23 +0.4 691,713 + Psyr_0602 0.23 +1.5 691,713 + Psyr_0602 0.23 -0.7 691,714 - Psyr_0602 0.23 +1.7 691,714 - Psyr_0602 0.23 +0.6 691,714 - Psyr_0602 0.23 +0.5 691,714 - Psyr_0602 0.23 +0.2 691,714 - Psyr_0602 0.23 +1.7 691,714 - Psyr_0602 0.23 -0.2 691,883 + Psyr_0602 0.45 +1.4 691,883 + Psyr_0602 0.45 -0.3 691,883 + Psyr_0602 0.45 +0.1 691,883 + Psyr_0602 0.45 +0.9 691,883 + Psyr_0602 0.45 +0.8 691,884 - Psyr_0602 0.45 +0.9 691,884 - +1.6 691,967 + Psyr_0602 0.56 +0.8 691,974 - Psyr_0602 0.57 -3.3 691,992 - Psyr_0602 0.59 +1.0 692,138 + Psyr_0602 0.78 +0.5 692,138 + Psyr_0602 0.78 +1.4 692,138 + Psyr_0602 0.78 -0.9 692,139 - Psyr_0602 0.79 -1.5 692,139 - Psyr_0602 0.79 +0.4 692,139 - Psyr_0602 0.79 -1.3 692,139 - Psyr_0602 0.79 +1.0 692,150 + Psyr_0602 0.80 -1.2 692,150 + Psyr_0602 0.80 -0.5 692,150 + Psyr_0602 0.80 +2.2 692,151 - Psyr_0602 0.80 +0.5 692,151 - Psyr_0602 0.80 -0.5 692,151 - Psyr_0602 0.80 -0.3 692,411 + -4.3 692,412 - -3.4 692,412 - -0.5 692,412 - -3.3 692,412 - -4.7 692,412 - -3.2 692,412 - -3.5 692,412 - -3.5 692,586 - Psyr_0603 0.20 -1.6 692,586 - Psyr_0603 0.20 -6.4 692,604 + Psyr_0603 0.22 -2.4 692,605 - Psyr_0603 0.22 -2.7 692,693 + Psyr_0603 0.29 -4.7 692,871 + Psyr_0603 0.44 -4.8 693,015 - Psyr_0603 0.56 -1.2 693,107 + Psyr_0603 0.63 -3.0 693,126 + Psyr_0603 0.65 -4.9 693,143 + Psyr_0603 0.66 -2.2 693,144 - Psyr_0603 0.66 +0.8 693,191 + Psyr_0603 0.70 -2.9 693,191 + Psyr_0603 0.70 -5.0 693,192 - Psyr_0603 0.70 -5.4 693,384 - Psyr_0603 0.86 -2.8 693,555 + -1.1
Or see this region's nucleotide sequence