Experiment: KB with Fusaric 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0469 and Psyr_0470 are separated by 75 nucleotides Psyr_0470 and Psyr_0471 are separated by 9 nucleotides
Psyr_0469: Psyr_0469 - dihydroxyacid dehydratase, at 508,137 to 509,984
_0469
Psyr_0470: Psyr_0470 - conserved hypothetical protein, at 510,060 to 510,383
_0470
Psyr_0471: Psyr_0471 - coproporphyrinogen III oxidase, anaerobic, at 510,393 to 511,607
_0471
Position (kb) 510
511 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 509.081 kb on + strand, within Psyr_0469 at 509.091 kb on + strand, within Psyr_0469 at 509.091 kb on + strand, within Psyr_0469 at 509.091 kb on + strand, within Psyr_0469 at 509.092 kb on - strand, within Psyr_0469 at 509.092 kb on - strand, within Psyr_0469 at 509.092 kb on - strand, within Psyr_0469 at 509.186 kb on - strand, within Psyr_0469 at 509.186 kb on - strand, within Psyr_0469 at 509.377 kb on - strand, within Psyr_0469 at 509.404 kb on + strand, within Psyr_0469 at 509.405 kb on - strand, within Psyr_0469 at 509.405 kb on - strand, within Psyr_0469 at 509.405 kb on - strand, within Psyr_0469 at 509.405 kb on - strand, within Psyr_0469 at 509.406 kb on + strand, within Psyr_0469 at 509.406 kb on + strand, within Psyr_0469 at 509.407 kb on - strand, within Psyr_0469 at 509.611 kb on - strand, within Psyr_0469 at 509.623 kb on - strand, within Psyr_0469 at 509.910 kb on + strand at 509.996 kb on - strand at 510.002 kb on + strand at 510.003 kb on - strand at 510.003 kb on - strand at 510.003 kb on - strand at 510.061 kb on + strand at 510.061 kb on + strand at 510.061 kb on + strand at 510.062 kb on - strand at 510.062 kb on - strand at 510.062 kb on - strand at 510.124 kb on + strand, within Psyr_0470 at 510.124 kb on + strand, within Psyr_0470 at 510.124 kb on + strand, within Psyr_0470 at 510.124 kb on + strand, within Psyr_0470 at 510.169 kb on + strand, within Psyr_0470 at 510.169 kb on + strand, within Psyr_0470 at 510.170 kb on - strand, within Psyr_0470 at 510.170 kb on - strand, within Psyr_0470 at 510.394 kb on + strand at 510.394 kb on + strand at 510.394 kb on + strand at 510.394 kb on + strand at 510.394 kb on + strand at 510.394 kb on + strand at 510.395 kb on - strand at 510.395 kb on - strand at 510.406 kb on + strand at 510.406 kb on + strand at 510.407 kb on - strand at 510.550 kb on - strand, within Psyr_0471 at 510.665 kb on - strand, within Psyr_0471 at 510.692 kb on + strand, within Psyr_0471 at 510.772 kb on + strand, within Psyr_0471 at 510.772 kb on + strand, within Psyr_0471 at 510.772 kb on + strand, within Psyr_0471 at 510.772 kb on + strand, within Psyr_0471 at 510.811 kb on + strand, within Psyr_0471 at 510.811 kb on + strand, within Psyr_0471 at 510.812 kb on - strand, within Psyr_0471 at 510.826 kb on + strand, within Psyr_0471
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Fusaric 250 ug/ml remove 509,081 + Psyr_0469 0.51 +0.4 509,091 + Psyr_0469 0.52 +0.7 509,091 + Psyr_0469 0.52 -0.1 509,091 + Psyr_0469 0.52 +0.7 509,092 - Psyr_0469 0.52 -1.8 509,092 - Psyr_0469 0.52 -0.8 509,092 - Psyr_0469 0.52 +2.8 509,186 - Psyr_0469 0.57 -0.3 509,186 - Psyr_0469 0.57 -1.0 509,377 - Psyr_0469 0.67 -1.4 509,404 + Psyr_0469 0.69 +0.8 509,405 - Psyr_0469 0.69 +0.1 509,405 - Psyr_0469 0.69 -0.5 509,405 - Psyr_0469 0.69 +0.2 509,405 - Psyr_0469 0.69 -0.5 509,406 + Psyr_0469 0.69 -0.7 509,406 + Psyr_0469 0.69 -2.0 509,407 - Psyr_0469 0.69 +0.4 509,611 - Psyr_0469 0.80 +2.8 509,623 - Psyr_0469 0.80 -0.2 509,910 + +1.1 509,996 - -1.6 510,002 + -0.2 510,003 - +1.1 510,003 - -0.9 510,003 - -0.4 510,061 + -1.8 510,061 + +0.9 510,061 + +0.8 510,062 - +0.4 510,062 - +0.9 510,062 - -1.4 510,124 + Psyr_0470 0.20 +2.1 510,124 + Psyr_0470 0.20 -2.0 510,124 + Psyr_0470 0.20 +0.4 510,124 + Psyr_0470 0.20 +0.6 510,169 + Psyr_0470 0.34 +0.1 510,169 + Psyr_0470 0.34 +0.2 510,170 - Psyr_0470 0.34 -0.1 510,170 - Psyr_0470 0.34 +1.4 510,394 + +0.8 510,394 + +1.5 510,394 + -0.1 510,394 + +0.8 510,394 + +0.2 510,394 + -1.3 510,395 - -0.1 510,395 - +0.0 510,406 + +2.8 510,406 + -0.2 510,407 - -0.3 510,550 - Psyr_0471 0.13 -0.4 510,665 - Psyr_0471 0.22 +0.8 510,692 + Psyr_0471 0.25 +0.2 510,772 + Psyr_0471 0.31 +2.0 510,772 + Psyr_0471 0.31 +0.4 510,772 + Psyr_0471 0.31 +0.1 510,772 + Psyr_0471 0.31 -1.2 510,811 + Psyr_0471 0.34 +0.4 510,811 + Psyr_0471 0.34 +0.4 510,812 - Psyr_0471 0.34 +0.8 510,826 + Psyr_0471 0.36 -0.9
Or see this region's nucleotide sequence