Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0436

Experiment: KB with Fusaric 250 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0434 and Psyr_0435 are separated by 1 nucleotidesPsyr_0435 and Psyr_0436 overlap by 4 nucleotidesPsyr_0436 and Psyr_0437 are separated by 9 nucleotidesPsyr_0437 and Psyr_0438 overlap by 26 nucleotides Psyr_0434: Psyr_0434 - AMP-dependent synthetase and ligase, at 472,788 to 474,479 _0434 Psyr_0435: Psyr_0435 - membrane protein, putative, at 474,481 to 475,026 _0435 Psyr_0436: Psyr_0436 - Phosphopantetheine-binding protein, at 475,023 to 475,277 _0436 Psyr_0437: Psyr_0437 - acyl carrier protein, putative, at 475,287 to 475,547 _0437 Psyr_0438: Psyr_0438 - Phospholipid/glycerol acyltransferase, at 475,522 to 476,334 _0438 Position (kb) 475 476Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 474.661 kb on - strand, within Psyr_0435at 474.669 kb on - strand, within Psyr_0435at 475.049 kb on - strand, within Psyr_0436at 475.049 kb on - strand, within Psyr_0436at 475.059 kb on + strand, within Psyr_0436at 475.060 kb on - strand, within Psyr_0436at 475.460 kb on + strand, within Psyr_0437at 475.461 kb on - strand, within Psyr_0437at 475.523 kb on + strandat 475.523 kb on + strandat 475.523 kb on + strandat 475.523 kb on + strandat 475.523 kb on + strandat 475.523 kb on + strandat 475.571 kb on + strandat 475.571 kb on + strandat 475.571 kb on + strandat 475.571 kb on + strandat 475.571 kb on + strandat 475.571 kb on + strandat 475.571 kb on + strandat 475.571 kb on + strandat 475.572 kb on - strandat 475.572 kb on - strandat 475.584 kb on - strandat 475.584 kb on - strandat 475.645 kb on + strand, within Psyr_0438at 475.645 kb on + strand, within Psyr_0438at 475.645 kb on + strand, within Psyr_0438at 475.646 kb on - strand, within Psyr_0438at 475.646 kb on - strand, within Psyr_0438at 475.646 kb on - strand, within Psyr_0438at 475.646 kb on - strand, within Psyr_0438at 475.646 kb on - strand, within Psyr_0438at 475.646 kb on - strand, within Psyr_0438at 475.919 kb on + strand, within Psyr_0438at 475.920 kb on - strand, within Psyr_0438at 476.093 kb on + strand, within Psyr_0438at 476.093 kb on + strand, within Psyr_0438at 476.093 kb on + strand, within Psyr_0438at 476.093 kb on + strand, within Psyr_0438at 476.093 kb on + strand, within Psyr_0438at 476.093 kb on + strand, within Psyr_0438at 476.093 kb on + strand, within Psyr_0438at 476.093 kb on + strand, within Psyr_0438at 476.093 kb on + strand, within Psyr_0438at 476.093 kb on + strand, within Psyr_0438at 476.094 kb on - strand, within Psyr_0438at 476.094 kb on - strand, within Psyr_0438at 476.094 kb on - strand, within Psyr_0438at 476.094 kb on - strand, within Psyr_0438

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Fusaric 250 ug/ml
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474,661 - Psyr_0435 0.33 -1.2
474,669 - Psyr_0435 0.34 +0.2
475,049 - Psyr_0436 0.10 +0.4
475,049 - Psyr_0436 0.10 -1.8
475,059 + Psyr_0436 0.14 -0.5
475,060 - Psyr_0436 0.15 -1.4
475,460 + Psyr_0437 0.66 +0.0
475,461 - Psyr_0437 0.67 -0.2
475,523 + +0.8
475,523 + +0.1
475,523 + -0.8
475,523 + +1.8
475,523 + +3.3
475,523 + +0.7
475,571 + +1.0
475,571 + +0.6
475,571 + +1.0
475,571 + -0.1
475,571 + +0.8
475,571 + +0.1
475,571 + +3.8
475,571 + +0.3
475,572 - +1.2
475,572 - +0.4
475,584 - +0.3
475,584 - -0.0
475,645 + Psyr_0438 0.15 +0.0
475,645 + Psyr_0438 0.15 +0.7
475,645 + Psyr_0438 0.15 -0.4
475,646 - Psyr_0438 0.15 +0.2
475,646 - Psyr_0438 0.15 -0.2
475,646 - Psyr_0438 0.15 +0.6
475,646 - Psyr_0438 0.15 -2.3
475,646 - Psyr_0438 0.15 +1.0
475,646 - Psyr_0438 0.15 +0.3
475,919 + Psyr_0438 0.49 -0.5
475,920 - Psyr_0438 0.49 -0.2
476,093 + Psyr_0438 0.70 +1.0
476,093 + Psyr_0438 0.70 +1.4
476,093 + Psyr_0438 0.70 +0.1
476,093 + Psyr_0438 0.70 -0.8
476,093 + Psyr_0438 0.70 +0.2
476,093 + Psyr_0438 0.70 +0.4
476,093 + Psyr_0438 0.70 +0.7
476,093 + Psyr_0438 0.70 -2.5
476,093 + Psyr_0438 0.70 +0.4
476,093 + Psyr_0438 0.70 +0.7
476,094 - Psyr_0438 0.70 -0.1
476,094 - Psyr_0438 0.70 -0.4
476,094 - Psyr_0438 0.70 -1.4
476,094 - Psyr_0438 0.70 +0.6

Or see this region's nucleotide sequence