Experiment: KB with Fusaric 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0399 and Psyr_0400 are separated by 13 nucleotides Psyr_0400 and Psyr_0401 are separated by 181 nucleotides Psyr_0401 and Psyr_0402 are separated by 584 nucleotides
Psyr_0399: Psyr_0399 - LSU ribosomal protein L31P, at 427,900 to 428,121
_0399
Psyr_0400: Psyr_0400 - nuclease (SNase-like), at 428,135 to 428,938
_0400
Psyr_0401: Psyr_0401 - Malate dehydrogenase (oxaloacetate decarboxylating) (NADP+), at 429,120 to 430,388
_0401
Psyr_0402: Psyr_0402 - Peptidoglycan glycosyltransferase, at 430,973 to 433,417
_0402
Position (kb) 429
430
431 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 428.120 kb on - strand at 428.120 kb on - strand at 428.120 kb on - strand at 428.283 kb on + strand, within Psyr_0400 at 428.326 kb on + strand, within Psyr_0400 at 428.327 kb on - strand, within Psyr_0400 at 428.459 kb on + strand, within Psyr_0400 at 428.483 kb on + strand, within Psyr_0400 at 428.483 kb on + strand, within Psyr_0400 at 428.484 kb on - strand, within Psyr_0400 at 428.484 kb on - strand, within Psyr_0400 at 428.484 kb on - strand, within Psyr_0400 at 428.537 kb on + strand, within Psyr_0400 at 428.537 kb on + strand, within Psyr_0400 at 428.936 kb on + strand at 428.987 kb on + strand at 428.999 kb on - strand at 428.999 kb on - strand at 429.003 kb on + strand at 429.003 kb on + strand at 429.003 kb on + strand at 429.004 kb on - strand at 429.004 kb on - strand at 429.010 kb on + strand at 429.010 kb on + strand at 429.010 kb on + strand at 429.011 kb on - strand at 429.022 kb on + strand at 429.023 kb on - strand at 429.051 kb on + strand at 429.051 kb on + strand at 429.057 kb on + strand at 429.057 kb on + strand at 429.057 kb on + strand at 429.057 kb on + strand at 429.057 kb on + strand at 429.058 kb on - strand at 429.058 kb on - strand at 429.058 kb on - strand at 429.058 kb on - strand at 429.070 kb on + strand at 429.098 kb on + strand at 429.117 kb on + strand at 429.117 kb on + strand at 429.117 kb on + strand at 429.117 kb on + strand at 429.118 kb on - strand at 429.118 kb on - strand at 429.118 kb on - strand at 429.118 kb on - strand at 429.118 kb on - strand at 429.118 kb on - strand at 429.118 kb on - strand at 429.118 kb on - strand at 429.118 kb on - strand at 429.118 kb on - strand at 429.151 kb on - strand at 429.151 kb on - strand at 429.231 kb on + strand at 429.232 kb on - strand at 429.232 kb on - strand at 429.288 kb on + strand, within Psyr_0401 at 429.288 kb on + strand, within Psyr_0401 at 429.288 kb on + strand, within Psyr_0401 at 429.288 kb on + strand, within Psyr_0401 at 429.289 kb on - strand, within Psyr_0401 at 429.289 kb on - strand, within Psyr_0401 at 429.289 kb on - strand, within Psyr_0401 at 429.294 kb on + strand, within Psyr_0401 at 429.294 kb on + strand, within Psyr_0401 at 429.294 kb on + strand, within Psyr_0401 at 429.294 kb on + strand, within Psyr_0401 at 429.294 kb on + strand, within Psyr_0401 at 429.295 kb on - strand, within Psyr_0401 at 429.295 kb on - strand, within Psyr_0401 at 429.295 kb on - strand, within Psyr_0401 at 429.295 kb on - strand, within Psyr_0401 at 429.295 kb on - strand, within Psyr_0401 at 429.295 kb on - strand, within Psyr_0401 at 429.295 kb on - strand, within Psyr_0401 at 429.295 kb on - strand, within Psyr_0401 at 429.316 kb on + strand, within Psyr_0401 at 429.323 kb on + strand, within Psyr_0401 at 429.323 kb on + strand, within Psyr_0401 at 429.323 kb on + strand, within Psyr_0401 at 429.324 kb on - strand, within Psyr_0401 at 429.324 kb on - strand, within Psyr_0401 at 429.324 kb on - strand, within Psyr_0401 at 429.395 kb on + strand, within Psyr_0401 at 429.395 kb on + strand, within Psyr_0401 at 429.395 kb on + strand, within Psyr_0401 at 429.491 kb on + strand, within Psyr_0401 at 429.780 kb on - strand, within Psyr_0401 at 429.820 kb on - strand, within Psyr_0401 at 429.820 kb on - strand, within Psyr_0401 at 429.886 kb on + strand, within Psyr_0401 at 429.886 kb on + strand, within Psyr_0401 at 429.887 kb on - strand, within Psyr_0401 at 429.887 kb on - strand, within Psyr_0401 at 429.887 kb on - strand, within Psyr_0401 at 430.051 kb on - strand, within Psyr_0401 at 430.210 kb on - strand, within Psyr_0401 at 430.242 kb on + strand, within Psyr_0401 at 430.242 kb on + strand, within Psyr_0401 at 430.242 kb on + strand, within Psyr_0401 at 430.242 kb on + strand, within Psyr_0401 at 430.242 kb on + strand, within Psyr_0401 at 430.242 kb on + strand, within Psyr_0401 at 430.242 kb on + strand, within Psyr_0401 at 430.242 kb on + strand, within Psyr_0401 at 430.242 kb on + strand, within Psyr_0401 at 430.242 kb on + strand, within Psyr_0401 at 430.243 kb on - strand, within Psyr_0401 at 430.243 kb on - strand, within Psyr_0401 at 430.243 kb on - strand, within Psyr_0401 at 430.243 kb on - strand, within Psyr_0401 at 430.243 kb on - strand, within Psyr_0401 at 430.243 kb on - strand, within Psyr_0401 at 430.243 kb on - strand, within Psyr_0401 at 430.547 kb on - strand at 430.547 kb on - strand at 430.578 kb on - strand at 430.578 kb on - strand at 430.579 kb on + strand at 430.579 kb on + strand at 430.579 kb on + strand at 430.579 kb on + strand at 430.580 kb on - strand at 430.580 kb on - strand at 430.580 kb on - strand at 430.580 kb on - strand at 430.580 kb on - strand at 430.580 kb on - strand at 430.580 kb on - strand at 430.580 kb on - strand at 430.795 kb on + strand at 430.797 kb on + strand at 430.797 kb on + strand at 430.797 kb on + strand at 430.797 kb on + strand at 430.798 kb on - strand at 430.798 kb on - strand at 430.854 kb on + strand at 430.854 kb on + strand at 430.854 kb on + strand at 430.854 kb on + strand at 430.855 kb on - strand at 430.855 kb on - strand at 430.855 kb on - strand at 430.971 kb on + strand at 431.208 kb on + strand at 431.208 kb on + strand at 431.208 kb on + strand at 431.208 kb on + strand at 431.208 kb on + strand at 431.208 kb on + strand at 431.209 kb on - strand at 431.209 kb on - strand at 431.209 kb on - strand at 431.209 kb on - strand at 431.209 kb on - strand at 431.209 kb on - strand at 431.209 kb on - strand at 431.209 kb on - strand at 431.301 kb on + strand, within Psyr_0402 at 431.301 kb on + strand, within Psyr_0402 at 431.301 kb on + strand, within Psyr_0402 at 431.301 kb on + strand, within Psyr_0402 at 431.313 kb on + strand, within Psyr_0402 at 431.314 kb on - strand, within Psyr_0402
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Fusaric 250 ug/ml remove 428,120 - -3.1 428,120 - +1.3 428,120 - -0.8 428,283 + Psyr_0400 0.18 +1.9 428,326 + Psyr_0400 0.24 -1.1 428,327 - Psyr_0400 0.24 -0.4 428,459 + Psyr_0400 0.40 +1.4 428,483 + Psyr_0400 0.43 -0.4 428,483 + Psyr_0400 0.43 +0.8 428,484 - Psyr_0400 0.43 -0.8 428,484 - Psyr_0400 0.43 +0.0 428,484 - Psyr_0400 0.43 -0.5 428,537 + Psyr_0400 0.50 -1.2 428,537 + Psyr_0400 0.50 -0.0 428,936 + -2.2 428,987 + +0.4 428,999 - +0.4 428,999 - +0.6 429,003 + +2.8 429,003 + -0.2 429,003 + -0.7 429,004 - +2.7 429,004 - +1.6 429,010 + -1.8 429,010 + -0.3 429,010 + -0.2 429,011 - +0.2 429,022 + -0.7 429,023 - +0.2 429,051 + -1.6 429,051 + +0.1 429,057 + -1.2 429,057 + -0.1 429,057 + -0.7 429,057 + -2.2 429,057 + +0.5 429,058 - +0.6 429,058 - +0.1 429,058 - +0.3 429,058 - -0.2 429,070 + -0.4 429,098 + +0.3 429,117 + -1.2 429,117 + +0.2 429,117 + -1.5 429,117 + -1.2 429,118 - -1.5 429,118 - +0.5 429,118 - -0.9 429,118 - +1.3 429,118 - +1.1 429,118 - +1.1 429,118 - +1.9 429,118 - +0.2 429,118 - +0.8 429,118 - +1.0 429,151 - -0.2 429,151 - -1.8 429,231 + -1.2 429,232 - +0.6 429,232 - -1.2 429,288 + Psyr_0401 0.13 -1.5 429,288 + Psyr_0401 0.13 +0.2 429,288 + Psyr_0401 0.13 +0.8 429,288 + Psyr_0401 0.13 -0.8 429,289 - Psyr_0401 0.13 +0.1 429,289 - Psyr_0401 0.13 -0.1 429,289 - Psyr_0401 0.13 +0.2 429,294 + Psyr_0401 0.14 -0.6 429,294 + Psyr_0401 0.14 +0.2 429,294 + Psyr_0401 0.14 -1.8 429,294 + Psyr_0401 0.14 -0.5 429,294 + Psyr_0401 0.14 -1.0 429,295 - Psyr_0401 0.14 -0.3 429,295 - Psyr_0401 0.14 +0.3 429,295 - Psyr_0401 0.14 -0.3 429,295 - Psyr_0401 0.14 -0.4 429,295 - Psyr_0401 0.14 -0.7 429,295 - Psyr_0401 0.14 +1.2 429,295 - Psyr_0401 0.14 -0.8 429,295 - Psyr_0401 0.14 -1.2 429,316 + Psyr_0401 0.15 +1.3 429,323 + Psyr_0401 0.16 -0.8 429,323 + Psyr_0401 0.16 +0.6 429,323 + Psyr_0401 0.16 +1.3 429,324 - Psyr_0401 0.16 -0.4 429,324 - Psyr_0401 0.16 -0.7 429,324 - Psyr_0401 0.16 +2.0 429,395 + Psyr_0401 0.22 +0.2 429,395 + Psyr_0401 0.22 -0.0 429,395 + Psyr_0401 0.22 -1.1 429,491 + Psyr_0401 0.29 -0.4 429,780 - Psyr_0401 0.52 -0.3 429,820 - Psyr_0401 0.55 +0.0 429,820 - Psyr_0401 0.55 -1.5 429,886 + Psyr_0401 0.60 -0.7 429,886 + Psyr_0401 0.60 +0.9 429,887 - Psyr_0401 0.60 -1.8 429,887 - Psyr_0401 0.60 +0.0 429,887 - Psyr_0401 0.60 -0.2 430,051 - Psyr_0401 0.73 -0.1 430,210 - Psyr_0401 0.86 +0.4 430,242 + Psyr_0401 0.88 +0.8 430,242 + Psyr_0401 0.88 +0.1 430,242 + Psyr_0401 0.88 +2.6 430,242 + Psyr_0401 0.88 -0.0 430,242 + Psyr_0401 0.88 -0.3 430,242 + Psyr_0401 0.88 +0.7 430,242 + Psyr_0401 0.88 +0.6 430,242 + Psyr_0401 0.88 -3.0 430,242 + Psyr_0401 0.88 +0.5 430,242 + Psyr_0401 0.88 +0.6 430,243 - Psyr_0401 0.88 +0.3 430,243 - Psyr_0401 0.88 +0.8 430,243 - Psyr_0401 0.88 +1.4 430,243 - Psyr_0401 0.88 +2.4 430,243 - Psyr_0401 0.88 +0.8 430,243 - Psyr_0401 0.88 +2.2 430,243 - Psyr_0401 0.88 +0.0 430,547 - -0.4 430,547 - +1.4 430,578 - +1.0 430,578 - -1.8 430,579 + +0.8 430,579 + +3.2 430,579 + +1.8 430,579 + +1.1 430,580 - +1.0 430,580 - +1.3 430,580 - -0.4 430,580 - -1.0 430,580 - -0.4 430,580 - +0.5 430,580 - +0.1 430,580 - +0.9 430,795 + -1.0 430,797 + -1.5 430,797 + -0.9 430,797 + -1.6 430,797 + -1.2 430,798 - +0.6 430,798 - +0.7 430,854 + +2.3 430,854 + -0.7 430,854 + -1.8 430,854 + -1.2 430,855 - +0.2 430,855 - -0.3 430,855 - +0.8 430,971 + +0.2 431,208 + -2.3 431,208 + -1.3 431,208 + -2.3 431,208 + -3.7 431,208 + -2.5 431,208 + -1.8 431,209 - -1.7 431,209 - -0.2 431,209 - -1.4 431,209 - -3.0 431,209 - +0.1 431,209 - -2.6 431,209 - -2.6 431,209 - -2.0 431,301 + Psyr_0402 0.13 +0.8 431,301 + Psyr_0402 0.13 -1.5 431,301 + Psyr_0402 0.13 -1.2 431,301 + Psyr_0402 0.13 -1.4 431,313 + Psyr_0402 0.14 -2.6 431,314 - Psyr_0402 0.14 -0.2
Or see this region's nucleotide sequence