Experiment: KB with Fusaric 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0223 and Psyr_0224 are separated by 364 nucleotides Psyr_0224 and Psyr_0225 are separated by 11 nucleotides Psyr_0225 and Psyr_0226 are separated by 81 nucleotides Psyr_0226 and Psyr_0227 are separated by 233 nucleotides
Psyr_0223: Psyr_0223 - extracellular solute-binding protein, family 5, at 237,260 to 238,846
_0223
Psyr_0224: Psyr_0224 - LSU ribosomal protein L28P, at 239,211 to 239,444
_0224
Psyr_0225: Psyr_0225 - LSU ribosomal protein L33P, at 239,456 to 239,611
_0225
Psyr_0226: Psyr_0226 - Protein of unknown function DUF861, at 239,693 to 240,061
_0226
Psyr_0227: Psyr_0227 - gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase, at 240,295 to 241,794
_0227
Position (kb) 239
240
241 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 238.728 kb on + strand at 238.728 kb on + strand at 238.728 kb on + strand at 238.728 kb on + strand at 238.728 kb on + strand at 238.728 kb on + strand at 238.729 kb on - strand at 238.729 kb on - strand at 238.729 kb on - strand at 238.729 kb on - strand at 238.729 kb on - strand at 238.729 kb on - strand at 238.729 kb on - strand at 238.733 kb on + strand at 238.733 kb on + strand at 238.733 kb on + strand at 238.733 kb on + strand at 238.733 kb on + strand at 238.733 kb on + strand at 238.733 kb on + strand at 238.733 kb on + strand at 238.733 kb on + strand at 238.733 kb on + strand at 238.734 kb on - strand at 238.734 kb on - strand at 238.734 kb on - strand at 238.734 kb on - strand at 238.734 kb on - strand at 238.821 kb on - strand at 238.838 kb on + strand at 238.839 kb on - strand at 238.839 kb on - strand at 238.839 kb on - strand at 238.839 kb on - strand at 238.853 kb on - strand at 238.853 kb on - strand at 238.853 kb on - strand at 238.909 kb on + strand at 238.910 kb on - strand at 238.910 kb on - strand at 238.918 kb on + strand at 238.918 kb on + strand at 238.918 kb on + strand at 238.918 kb on + strand at 238.918 kb on + strand at 238.918 kb on + strand at 238.918 kb on + strand at 238.918 kb on + strand at 238.919 kb on - strand at 239.690 kb on + strand at 239.691 kb on - strand at 239.694 kb on + strand at 239.694 kb on + strand at 239.694 kb on + strand at 239.694 kb on + strand at 239.694 kb on + strand at 239.694 kb on + strand at 239.695 kb on - strand at 239.695 kb on - strand at 239.695 kb on - strand at 239.695 kb on - strand at 239.695 kb on - strand at 239.695 kb on - strand at 239.698 kb on + strand at 239.698 kb on + strand at 239.699 kb on - strand at 239.699 kb on - strand at 239.724 kb on + strand at 239.724 kb on + strand at 239.724 kb on + strand at 239.725 kb on - strand at 239.725 kb on - strand at 239.725 kb on - strand at 239.725 kb on - strand at 239.725 kb on - strand at 239.725 kb on - strand at 239.758 kb on + strand, within Psyr_0226 at 239.758 kb on + strand, within Psyr_0226 at 239.759 kb on - strand, within Psyr_0226 at 239.759 kb on - strand, within Psyr_0226 at 239.759 kb on - strand, within Psyr_0226 at 239.862 kb on + strand, within Psyr_0226 at 239.862 kb on + strand, within Psyr_0226 at 239.862 kb on + strand, within Psyr_0226 at 239.863 kb on - strand, within Psyr_0226 at 239.863 kb on - strand, within Psyr_0226 at 239.863 kb on - strand, within Psyr_0226 at 239.863 kb on - strand, within Psyr_0226 at 239.877 kb on + strand, within Psyr_0226 at 239.877 kb on + strand, within Psyr_0226 at 239.878 kb on - strand, within Psyr_0226 at 239.882 kb on + strand, within Psyr_0226 at 239.882 kb on + strand, within Psyr_0226 at 239.883 kb on - strand, within Psyr_0226 at 239.946 kb on + strand, within Psyr_0226 at 239.946 kb on + strand, within Psyr_0226 at 239.947 kb on - strand, within Psyr_0226 at 239.947 kb on - strand, within Psyr_0226 at 239.955 kb on + strand, within Psyr_0226 at 239.956 kb on - strand, within Psyr_0226 at 239.956 kb on - strand, within Psyr_0226 at 240.007 kb on - strand, within Psyr_0226 at 240.146 kb on + strand at 240.157 kb on + strand at 240.157 kb on + strand at 240.157 kb on + strand at 240.157 kb on + strand at 240.157 kb on + strand at 240.157 kb on + strand at 240.158 kb on - strand at 240.158 kb on - strand at 240.179 kb on + strand at 240.179 kb on + strand at 240.179 kb on + strand at 240.179 kb on + strand at 240.180 kb on - strand at 240.180 kb on - strand at 240.180 kb on - strand at 240.188 kb on + strand at 240.188 kb on + strand at 240.188 kb on + strand at 240.188 kb on + strand at 240.188 kb on + strand at 240.189 kb on - strand at 240.189 kb on - strand at 240.189 kb on - strand at 240.189 kb on - strand at 240.190 kb on + strand at 240.215 kb on + strand at 240.382 kb on + strand at 240.382 kb on + strand at 240.382 kb on + strand at 240.382 kb on + strand at 240.382 kb on + strand at 240.383 kb on - strand at 240.383 kb on - strand at 240.663 kb on - strand, within Psyr_0227 at 240.715 kb on + strand, within Psyr_0227 at 240.715 kb on + strand, within Psyr_0227 at 240.715 kb on + strand, within Psyr_0227 at 240.715 kb on + strand, within Psyr_0227 at 240.715 kb on + strand, within Psyr_0227 at 240.715 kb on + strand, within Psyr_0227 at 240.715 kb on + strand, within Psyr_0227 at 240.716 kb on - strand, within Psyr_0227 at 240.956 kb on + strand, within Psyr_0227 at 240.956 kb on + strand, within Psyr_0227 at 240.956 kb on + strand, within Psyr_0227 at 240.956 kb on + strand, within Psyr_0227 at 240.956 kb on + strand, within Psyr_0227 at 240.957 kb on - strand, within Psyr_0227 at 240.957 kb on - strand, within Psyr_0227 at 240.957 kb on - strand, within Psyr_0227 at 240.957 kb on - strand, within Psyr_0227 at 241.002 kb on + strand, within Psyr_0227 at 241.003 kb on - strand, within Psyr_0227
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Fusaric 250 ug/ml remove 238,728 + +1.1 238,728 + +0.9 238,728 + +1.2 238,728 + -0.0 238,728 + +1.2 238,728 + -0.1 238,729 - -0.1 238,729 - -2.1 238,729 - -0.6 238,729 - +0.7 238,729 - +1.4 238,729 - -0.0 238,729 - -0.4 238,733 + -0.5 238,733 + -0.9 238,733 + -0.9 238,733 + -0.1 238,733 + -0.2 238,733 + -0.9 238,733 + -0.1 238,733 + -0.8 238,733 + +0.6 238,733 + +1.2 238,734 - +0.1 238,734 - -0.4 238,734 - -1.0 238,734 - +1.3 238,734 - -0.1 238,821 - +0.9 238,838 + -0.1 238,839 - -1.3 238,839 - +1.0 238,839 - -0.3 238,839 - -1.1 238,853 - +0.5 238,853 - -1.1 238,853 - +0.5 238,909 + +1.5 238,910 - -0.1 238,910 - -2.0 238,918 + +0.9 238,918 + -0.9 238,918 + +0.6 238,918 + +1.8 238,918 + -0.2 238,918 + -0.2 238,918 + +0.4 238,918 + -1.0 238,919 - -0.1 239,690 + -0.9 239,691 - +1.7 239,694 + -2.2 239,694 + -0.6 239,694 + +0.4 239,694 + -0.3 239,694 + +0.1 239,694 + -1.0 239,695 - -1.1 239,695 - +1.4 239,695 - -0.3 239,695 - -3.3 239,695 - +0.4 239,695 - +0.1 239,698 + +0.2 239,698 + -0.3 239,699 - +0.2 239,699 - +0.2 239,724 + +0.2 239,724 + -1.7 239,724 + -0.3 239,725 - -0.9 239,725 - -0.9 239,725 - +1.9 239,725 - -0.5 239,725 - -2.0 239,725 - +1.1 239,758 + Psyr_0226 0.18 -0.3 239,758 + Psyr_0226 0.18 -1.1 239,759 - Psyr_0226 0.18 -0.2 239,759 - Psyr_0226 0.18 -0.4 239,759 - Psyr_0226 0.18 +0.6 239,862 + Psyr_0226 0.46 -0.0 239,862 + Psyr_0226 0.46 -1.6 239,862 + Psyr_0226 0.46 -1.1 239,863 - Psyr_0226 0.46 -0.6 239,863 - Psyr_0226 0.46 -0.0 239,863 - Psyr_0226 0.46 -1.6 239,863 - Psyr_0226 0.46 +0.4 239,877 + Psyr_0226 0.50 -0.1 239,877 + Psyr_0226 0.50 +0.1 239,878 - Psyr_0226 0.50 -0.1 239,882 + Psyr_0226 0.51 -0.7 239,882 + Psyr_0226 0.51 -1.3 239,883 - Psyr_0226 0.51 -0.7 239,946 + Psyr_0226 0.69 +0.3 239,946 + Psyr_0226 0.69 -2.2 239,947 - Psyr_0226 0.69 -0.1 239,947 - Psyr_0226 0.69 +0.8 239,955 + Psyr_0226 0.71 -3.6 239,956 - Psyr_0226 0.71 +0.6 239,956 - Psyr_0226 0.71 -0.2 240,007 - Psyr_0226 0.85 +0.4 240,146 + +1.1 240,157 + -3.0 240,157 + -1.3 240,157 + -1.1 240,157 + -2.3 240,157 + -1.0 240,157 + -0.1 240,158 - +1.9 240,158 - +0.6 240,179 + -1.8 240,179 + -2.0 240,179 + -2.3 240,179 + +0.1 240,180 - +1.7 240,180 - +0.2 240,180 - +0.1 240,188 + -2.6 240,188 + -1.7 240,188 + -2.7 240,188 + -0.4 240,188 + -1.3 240,189 - -0.1 240,189 - +0.7 240,189 - -1.2 240,189 - -0.7 240,190 + +1.5 240,215 + -2.4 240,382 + +0.9 240,382 + +0.4 240,382 + +2.5 240,382 + -0.7 240,382 + +0.1 240,383 - +1.5 240,383 - +0.2 240,663 - Psyr_0227 0.25 +2.0 240,715 + Psyr_0227 0.28 +1.4 240,715 + Psyr_0227 0.28 -2.0 240,715 + Psyr_0227 0.28 +0.0 240,715 + Psyr_0227 0.28 -0.4 240,715 + Psyr_0227 0.28 +1.6 240,715 + Psyr_0227 0.28 +0.9 240,715 + Psyr_0227 0.28 +1.2 240,716 - Psyr_0227 0.28 +0.2 240,956 + Psyr_0227 0.44 -1.4 240,956 + Psyr_0227 0.44 +1.3 240,956 + Psyr_0227 0.44 -0.5 240,956 + Psyr_0227 0.44 +1.1 240,956 + Psyr_0227 0.44 +0.7 240,957 - Psyr_0227 0.44 -0.3 240,957 - Psyr_0227 0.44 +0.6 240,957 - Psyr_0227 0.44 -0.5 240,957 - Psyr_0227 0.44 -0.3 241,002 + Psyr_0227 0.47 +1.1 241,003 - Psyr_0227 0.47 +0.4
Or see this region's nucleotide sequence