Experiment: KB with Fusaric 250 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0152 and Psyr_0153 overlap by 22 nucleotides Psyr_0153 and Psyr_0154 overlap by 4 nucleotides Psyr_0154 and Psyr_0155 are separated by 1 nucleotides Psyr_0155 and Psyr_0156 overlap by 4 nucleotides
Psyr_0152: Psyr_0152 - FAD-dependent pyridine nucleotide-disulfide oxidoreductase:BFD-like [2Fe-2S]-binding region, at 165,081 to 166,490
_0152
Psyr_0153: Psyr_0153 - conserved hypothetical protein, at 166,469 to 166,780
_0153
Psyr_0154: Psyr_0154 - Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal, at 166,777 to 168,618
_0154
Psyr_0155: Psyr_0155 - Binding-protein-dependent transport systems inner membrane component, at 168,620 to 169,498
_0155
Psyr_0156: Psyr_0156 - Binding-protein-dependent transport systems inner membrane component, at 169,495 to 170,451
_0156
Position (kb)
166
167
168
169 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 165.820 kb on + strand, within Psyr_0152 at 165.820 kb on + strand, within Psyr_0152 at 165.821 kb on - strand, within Psyr_0152 at 165.821 kb on - strand, within Psyr_0152 at 165.821 kb on - strand, within Psyr_0152 at 165.821 kb on - strand, within Psyr_0152 at 165.821 kb on - strand, within Psyr_0152 at 165.821 kb on - strand, within Psyr_0152 at 165.952 kb on + strand, within Psyr_0152 at 165.953 kb on - strand, within Psyr_0152 at 165.970 kb on + strand, within Psyr_0152 at 165.970 kb on + strand, within Psyr_0152 at 165.970 kb on + strand, within Psyr_0152 at 165.970 kb on + strand, within Psyr_0152 at 165.971 kb on - strand, within Psyr_0152 at 166.060 kb on + strand, within Psyr_0152 at 166.060 kb on + strand, within Psyr_0152 at 166.061 kb on - strand, within Psyr_0152 at 166.061 kb on - strand, within Psyr_0152 at 166.061 kb on - strand, within Psyr_0152 at 166.061 kb on - strand, within Psyr_0152 at 166.216 kb on + strand, within Psyr_0152 at 166.285 kb on + strand, within Psyr_0152 at 166.285 kb on + strand, within Psyr_0152 at 166.285 kb on + strand, within Psyr_0152 at 166.286 kb on - strand, within Psyr_0152 at 166.330 kb on + strand, within Psyr_0152 at 166.331 kb on - strand, within Psyr_0152 at 166.331 kb on - strand, within Psyr_0152 at 166.649 kb on + strand, within Psyr_0153 at 166.649 kb on + strand, within Psyr_0153 at 166.650 kb on - strand, within Psyr_0153 at 166.650 kb on - strand, within Psyr_0153 at 166.734 kb on - strand, within Psyr_0153 at 166.734 kb on - strand, within Psyr_0153 at 166.734 kb on - strand, within Psyr_0153 at 166.784 kb on + strand at 166.784 kb on + strand at 167.063 kb on + strand, within Psyr_0154 at 167.064 kb on - strand, within Psyr_0154 at 167.064 kb on - strand, within Psyr_0154 at 167.126 kb on + strand, within Psyr_0154 at 167.126 kb on + strand, within Psyr_0154 at 167.126 kb on + strand, within Psyr_0154 at 167.127 kb on - strand, within Psyr_0154 at 167.127 kb on - strand, within Psyr_0154 at 167.127 kb on - strand, within Psyr_0154 at 167.127 kb on - strand, within Psyr_0154 at 167.127 kb on - strand, within Psyr_0154 at 167.127 kb on - strand, within Psyr_0154 at 167.127 kb on - strand, within Psyr_0154 at 167.127 kb on - strand, within Psyr_0154 at 167.127 kb on - strand, within Psyr_0154 at 167.190 kb on - strand, within Psyr_0154 at 167.254 kb on - strand, within Psyr_0154 at 167.447 kb on + strand, within Psyr_0154 at 167.447 kb on + strand, within Psyr_0154 at 167.447 kb on + strand, within Psyr_0154 at 167.447 kb on + strand, within Psyr_0154 at 167.447 kb on + strand, within Psyr_0154 at 167.447 kb on + strand, within Psyr_0154 at 167.447 kb on + strand, within Psyr_0154 at 167.448 kb on - strand, within Psyr_0154 at 167.448 kb on - strand, within Psyr_0154 at 167.448 kb on - strand, within Psyr_0154 at 167.448 kb on - strand, within Psyr_0154 at 167.448 kb on - strand, within Psyr_0154 at 167.871 kb on - strand, within Psyr_0154 at 167.871 kb on - strand, within Psyr_0154 at 167.990 kb on + strand, within Psyr_0154 at 167.990 kb on + strand, within Psyr_0154 at 167.990 kb on + strand, within Psyr_0154 at 167.990 kb on + strand, within Psyr_0154 at 167.990 kb on + strand, within Psyr_0154 at 167.990 kb on + strand, within Psyr_0154 at 167.990 kb on + strand, within Psyr_0154 at 167.991 kb on - strand, within Psyr_0154 at 167.991 kb on - strand, within Psyr_0154 at 167.991 kb on - strand, within Psyr_0154 at 167.991 kb on - strand, within Psyr_0154 at 167.991 kb on - strand, within Psyr_0154 at 167.991 kb on - strand, within Psyr_0154 at 167.991 kb on - strand, within Psyr_0154 at 167.991 kb on - strand, within Psyr_0154 at 167.991 kb on - strand, within Psyr_0154 at 167.991 kb on - strand, within Psyr_0154 at 167.991 kb on - strand, within Psyr_0154 at 167.991 kb on - strand, within Psyr_0154 at 168.338 kb on + strand, within Psyr_0154 at 168.338 kb on + strand, within Psyr_0154 at 168.338 kb on + strand, within Psyr_0154 at 168.338 kb on + strand, within Psyr_0154 at 168.339 kb on - strand, within Psyr_0154 at 168.339 kb on - strand, within Psyr_0154 at 168.794 kb on + strand, within Psyr_0155 at 168.794 kb on + strand, within Psyr_0155 at 168.795 kb on - strand, within Psyr_0155 at 168.912 kb on + strand, within Psyr_0155 at 168.912 kb on + strand, within Psyr_0155 at 168.912 kb on + strand, within Psyr_0155 at 168.912 kb on + strand, within Psyr_0155 at 168.912 kb on + strand, within Psyr_0155 at 168.912 kb on + strand, within Psyr_0155 at 168.912 kb on + strand, within Psyr_0155 at 168.912 kb on + strand, within Psyr_0155 at 168.912 kb on + strand, within Psyr_0155 at 168.912 kb on + strand, within Psyr_0155 at 168.912 kb on + strand, within Psyr_0155 at 168.912 kb on + strand, within Psyr_0155 at 168.912 kb on + strand, within Psyr_0155 at 168.913 kb on - strand, within Psyr_0155 at 168.913 kb on - strand, within Psyr_0155 at 168.913 kb on - strand, within Psyr_0155 at 168.913 kb on - strand, within Psyr_0155 at 168.913 kb on - strand, within Psyr_0155 at 168.913 kb on - strand, within Psyr_0155 at 168.913 kb on - strand, within Psyr_0155 at 168.913 kb on - strand, within Psyr_0155 at 168.913 kb on - strand, within Psyr_0155 at 168.913 kb on - strand, within Psyr_0155 at 168.913 kb on - strand, within Psyr_0155 at 168.913 kb on - strand, within Psyr_0155 at 168.913 kb on - strand, within Psyr_0155 at 168.916 kb on + strand, within Psyr_0155 at 168.916 kb on + strand, within Psyr_0155 at 168.917 kb on - strand, within Psyr_0155 at 168.917 kb on - strand, within Psyr_0155 at 168.951 kb on + strand, within Psyr_0155 at 168.952 kb on - strand, within Psyr_0155 at 168.952 kb on - strand, within Psyr_0155 at 169.011 kb on + strand, within Psyr_0155 at 169.011 kb on + strand, within Psyr_0155 at 169.011 kb on + strand, within Psyr_0155 at 169.272 kb on + strand, within Psyr_0155 at 169.272 kb on + strand, within Psyr_0155 at 169.272 kb on + strand, within Psyr_0155 at 169.273 kb on - strand, within Psyr_0155 at 169.273 kb on - strand, within Psyr_0155 at 169.291 kb on - strand, within Psyr_0155 at 169.562 kb on + strand at 169.563 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Fusaric 250 ug/ml remove 165,820 + Psyr_0152 0.52 -0.3 165,820 + Psyr_0152 0.52 +0.3 165,821 - Psyr_0152 0.52 -0.2 165,821 - Psyr_0152 0.52 -0.4 165,821 - Psyr_0152 0.52 +0.0 165,821 - Psyr_0152 0.52 +0.1 165,821 - Psyr_0152 0.52 -2.7 165,821 - Psyr_0152 0.52 +2.2 165,952 + Psyr_0152 0.62 +0.7 165,953 - Psyr_0152 0.62 +1.5 165,970 + Psyr_0152 0.63 +0.9 165,970 + Psyr_0152 0.63 -0.1 165,970 + Psyr_0152 0.63 +0.0 165,970 + Psyr_0152 0.63 -1.9 165,971 - Psyr_0152 0.63 -0.5 166,060 + Psyr_0152 0.69 +1.5 166,060 + Psyr_0152 0.69 +0.8 166,061 - Psyr_0152 0.70 -1.3 166,061 - Psyr_0152 0.70 +0.3 166,061 - Psyr_0152 0.70 -1.4 166,061 - Psyr_0152 0.70 +0.0 166,216 + Psyr_0152 0.80 +0.3 166,285 + Psyr_0152 0.85 +0.7 166,285 + Psyr_0152 0.85 +0.8 166,285 + Psyr_0152 0.85 -0.2 166,286 - Psyr_0152 0.85 +2.5 166,330 + Psyr_0152 0.89 +0.4 166,331 - Psyr_0152 0.89 -0.7 166,331 - Psyr_0152 0.89 +1.0 166,649 + Psyr_0153 0.58 -0.1 166,649 + Psyr_0153 0.58 -1.3 166,650 - Psyr_0153 0.58 -0.7 166,650 - Psyr_0153 0.58 +0.0 166,734 - Psyr_0153 0.85 -1.6 166,734 - Psyr_0153 0.85 +0.4 166,734 - Psyr_0153 0.85 +1.2 166,784 + -1.4 166,784 + +0.8 167,063 + Psyr_0154 0.16 -1.2 167,064 - Psyr_0154 0.16 -1.0 167,064 - Psyr_0154 0.16 -3.0 167,126 + Psyr_0154 0.19 -1.6 167,126 + Psyr_0154 0.19 +0.6 167,126 + Psyr_0154 0.19 +0.2 167,127 - Psyr_0154 0.19 -0.4 167,127 - Psyr_0154 0.19 +0.3 167,127 - Psyr_0154 0.19 -0.4 167,127 - Psyr_0154 0.19 +0.6 167,127 - Psyr_0154 0.19 -1.4 167,127 - Psyr_0154 0.19 +0.9 167,127 - Psyr_0154 0.19 +1.2 167,127 - Psyr_0154 0.19 +0.7 167,127 - Psyr_0154 0.19 +1.9 167,190 - Psyr_0154 0.22 +0.9 167,254 - Psyr_0154 0.26 +0.1 167,447 + Psyr_0154 0.36 -0.7 167,447 + Psyr_0154 0.36 +0.2 167,447 + Psyr_0154 0.36 +1.7 167,447 + Psyr_0154 0.36 +0.2 167,447 + Psyr_0154 0.36 -2.1 167,447 + Psyr_0154 0.36 -0.1 167,447 + Psyr_0154 0.36 +0.6 167,448 - Psyr_0154 0.36 +0.5 167,448 - Psyr_0154 0.36 +1.1 167,448 - Psyr_0154 0.36 -0.5 167,448 - Psyr_0154 0.36 -1.9 167,448 - Psyr_0154 0.36 -0.1 167,871 - Psyr_0154 0.59 +0.9 167,871 - Psyr_0154 0.59 +0.5 167,990 + Psyr_0154 0.66 +0.5 167,990 + Psyr_0154 0.66 +1.5 167,990 + Psyr_0154 0.66 +0.7 167,990 + Psyr_0154 0.66 -1.2 167,990 + Psyr_0154 0.66 -0.3 167,990 + Psyr_0154 0.66 -0.3 167,990 + Psyr_0154 0.66 -0.4 167,991 - Psyr_0154 0.66 -2.7 167,991 - Psyr_0154 0.66 +0.6 167,991 - Psyr_0154 0.66 +0.4 167,991 - Psyr_0154 0.66 +1.4 167,991 - Psyr_0154 0.66 -0.9 167,991 - Psyr_0154 0.66 -0.3 167,991 - Psyr_0154 0.66 +0.9 167,991 - Psyr_0154 0.66 +0.5 167,991 - Psyr_0154 0.66 +1.1 167,991 - Psyr_0154 0.66 -0.8 167,991 - Psyr_0154 0.66 +0.3 167,991 - Psyr_0154 0.66 -0.8 168,338 + Psyr_0154 0.85 +1.5 168,338 + Psyr_0154 0.85 +0.4 168,338 + Psyr_0154 0.85 +2.1 168,338 + Psyr_0154 0.85 +0.3 168,339 - Psyr_0154 0.85 -0.7 168,339 - Psyr_0154 0.85 -0.4 168,794 + Psyr_0155 0.20 +0.6 168,794 + Psyr_0155 0.20 -0.8 168,795 - Psyr_0155 0.20 +2.6 168,912 + Psyr_0155 0.33 -0.0 168,912 + Psyr_0155 0.33 +0.4 168,912 + Psyr_0155 0.33 -1.3 168,912 + Psyr_0155 0.33 -0.3 168,912 + Psyr_0155 0.33 -0.7 168,912 + Psyr_0155 0.33 +0.1 168,912 + Psyr_0155 0.33 +0.4 168,912 + Psyr_0155 0.33 +0.2 168,912 + Psyr_0155 0.33 -0.7 168,912 + Psyr_0155 0.33 +0.3 168,912 + Psyr_0155 0.33 +1.6 168,912 + Psyr_0155 0.33 +0.7 168,912 + Psyr_0155 0.33 +0.1 168,913 - Psyr_0155 0.33 -2.0 168,913 - Psyr_0155 0.33 +1.1 168,913 - Psyr_0155 0.33 -1.4 168,913 - Psyr_0155 0.33 -1.7 168,913 - Psyr_0155 0.33 -0.9 168,913 - Psyr_0155 0.33 +0.7 168,913 - Psyr_0155 0.33 +1.2 168,913 - Psyr_0155 0.33 -1.6 168,913 - Psyr_0155 0.33 +0.0 168,913 - Psyr_0155 0.33 -0.8 168,913 - Psyr_0155 0.33 +1.5 168,913 - Psyr_0155 0.33 -0.8 168,913 - Psyr_0155 0.33 +0.2 168,916 + Psyr_0155 0.34 -0.1 168,916 + Psyr_0155 0.34 +0.1 168,917 - Psyr_0155 0.34 -0.3 168,917 - Psyr_0155 0.34 +0.7 168,951 + Psyr_0155 0.38 +1.1 168,952 - Psyr_0155 0.38 -0.0 168,952 - Psyr_0155 0.38 +1.0 169,011 + Psyr_0155 0.44 +0.0 169,011 + Psyr_0155 0.44 -0.4 169,011 + Psyr_0155 0.44 -1.0 169,272 + Psyr_0155 0.74 +1.0 169,272 + Psyr_0155 0.74 -1.6 169,272 + Psyr_0155 0.74 -0.8 169,273 - Psyr_0155 0.74 -0.1 169,273 - Psyr_0155 0.74 +0.3 169,291 - Psyr_0155 0.76 +1.3 169,562 + -2.6 169,563 - -0.7
Or see this region's nucleotide sequence