Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2076

Experiment: Varel_Bryant_medium_Glucose with Lithocholic 0.2 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Varel_Bryant_medium_Glucose with Lithocholic 0.2 mg/ml
2,599,957	+		BT2074	0.81	-3.6
2,599,958	-		BT2074	0.81	-2.1
2,599,958	-		BT2074	0.81	-2.0
2,600,087	-				-3.2
2,600,087	-				-3.3
2,600,165	+				-2.8
2,600,181	-				-0.0
2,600,186	-				+0.3
2,600,187	+				-4.1
2,600,188	-				+0.1
2,600,216	+				-2.8
2,600,216	+				-6.5
2,600,216	+				-2.4
2,600,220	-				+0.4
2,600,247	-				+0.3
2,600,319	+		BT2075	0.17	-1.2
2,600,319	+		BT2075	0.17	-5.7
2,600,319	+		BT2075	0.17	-3.9
2,600,320	-		BT2075	0.18	+0.0
2,600,342	-		BT2075	0.21	-0.2
2,600,356	-		BT2075	0.22	+0.3
2,600,381	+		BT2075	0.26	-3.1
2,600,520	-		BT2075	0.44	-0.4
2,600,521	+		BT2075	0.45	-3.3
2,600,521	+		BT2075	0.45	-5.6
2,600,522	-		BT2075	0.45	-0.0
2,600,524	-		BT2075	0.45	+0.5
2,600,710	-		BT2075	0.70	-0.7
2,600,763	+		BT2075	0.77	-5.8
2,600,764	-		BT2075	0.77	+1.8
2,600,782	+		BT2075	0.80	-3.1
2,600,782	+		BT2075	0.80	-1.6
2,600,782	+		BT2075	0.80	-4.4
2,600,783	-		BT2075	0.80	+0.2
2,600,904	+				-0.0
2,600,934	-				-2.0
2,601,015	+		BT2076	0.15	-3.7
2,601,015	+		BT2076	0.15	-5.4
2,601,015	+		BT2076	0.15	-3.3
2,601,087	+		BT2076	0.27	-2.6
2,601,143	-		BT2076	0.37	-1.8
2,601,156	+		BT2076	0.40	-3.8
2,601,158	+		BT2076	0.40	-3.0
2,601,159	-		BT2076	0.40	-6.2
2,601,208	-		BT2076	0.49	-1.0
2,601,216	+		BT2076	0.50	-3.0
2,601,217	-		BT2076	0.51	-1.0
2,601,218	+		BT2076	0.51	-2.8
2,601,218	+		BT2076	0.51	-3.0
2,601,218	+		BT2076	0.51	-1.4
2,601,218	+		BT2076	0.51	-2.7
2,601,219	-		BT2076	0.51	-2.2
2,601,220	+		BT2076	0.51	-0.0
2,601,220	+		BT2076	0.51	-2.2
2,601,261	-		BT2076	0.58	-1.0
2,601,345	+		BT2076	0.73	-4.1
2,601,351	+		BT2076	0.74	-4.5
2,601,355	+		BT2076	0.75	-1.9
2,601,400	+		BT2076	0.83	-4.2
2,601,466	+				-3.0
2,601,496	-				-3.6
2,601,496	-				-2.2
2,601,496	-				-3.6
2,601,681	+				-6.0
2,601,978	+		BT2077	0.27	-1.0
2,601,978	+		BT2077	0.27	-2.8
2,601,991	-		BT2077	0.28	-3.3
2,601,996	+		BT2077	0.28	-4.9
2,602,030	+		BT2077	0.30	-2.6
2,602,031	-		BT2077	0.30	-2.8
2,602,267	+		BT2077	0.44	-4.6
2,602,268	-		BT2077	0.44	-0.0
2,602,268	-		BT2077	0.44	-2.9
2,602,279	+		BT2077	0.45	-2.9
2,602,333	-		BT2077	0.48	-1.8
2,602,368	+		BT2077	0.50	-3.6
2,602,385	-		BT2077	0.51	-1.4
2,602,398	+		BT2077	0.52	-2.4
2,602,401	+		BT2077	0.52	-2.4
2,602,402	-		BT2077	0.52	-1.8
2,602,402	-		BT2077	0.52	-1.6
2,602,491	+		BT2077	0.58	-5.7