Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT1364

Experiment: Varel_Bryant_medium_Glucose with Lithocholic 0.2 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBT1362 and BT1363 overlap by 1 nucleotidesBT1363 and BT1364 are separated by 79 nucleotidesBT1364 and BT1365 are separated by 152 nucleotides BT1362: BT1362 - flavoprotein (NCBI ptt file), at 1,689,941 to 1,691,143 BT1362 BT1363: BT1363 - DNA Pol III Epsilon Chain (NCBI ptt file), at 1,691,143 to 1,691,976 BT1363 BT1364: BT1364 - DNA polymerase III, beta chain (NCBI ptt file), at 1,692,056 to 1,693,180 BT1364 BT1365: BT1365 - hypothetical protein (NCBI ptt file), at 1,693,333 to 1,693,707 BT1365 Position (kb) 1692 1693 1694Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1691.161 kb on - strandat 1691.439 kb on - strand, within BT1363at 1691.503 kb on - strand, within BT1363at 1691.552 kb on - strand, within BT1363at 1693.209 kb on - strandat 1693.211 kb on - strandat 1693.950 kb on - strandat 1694.108 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Lithocholic 0.2 mg/ml
remove
1,691,161 - -3.7
1,691,439 - BT1363 0.35 -1.6
1,691,503 - BT1363 0.43 -2.4
1,691,552 - BT1363 0.49 -2.4
1,693,209 - +0.1
1,693,211 - -0.3
1,693,950 - -3.4
1,694,108 + +2.1

Or see this region's nucleotide sequence