Experiment: Varel_Bryant_medium_Glucose with Lithocholic 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0535 and BT0536 are separated by 172 nucleotides BT0536 and BT0537 overlap by 4 nucleotides
BT0535: BT0535 - iron-containing alcohol dehydrogenase (NCBI ptt file), at 658,163 to 659,308
BT0535
BT0536: BT0536 - two-component system sensor protein (NCBI ptt file), at 659,481 to 660,041
BT0536
BT0537: BT0537 - conserved hypothetical protein (NCBI ptt file), at 660,038 to 661,102
BT0537
Position (kb) 659
660
661 Strain fitness (log2 ratio) -2
-1
0
1
2 at 658.490 kb on + strand, within BT0535 at 658.635 kb on - strand, within BT0535 at 658.754 kb on + strand, within BT0535 at 658.754 kb on + strand, within BT0535 at 658.822 kb on - strand, within BT0535 at 658.996 kb on + strand, within BT0535 at 658.996 kb on + strand, within BT0535 at 659.009 kb on - strand, within BT0535 at 659.025 kb on + strand, within BT0535 at 659.066 kb on + strand, within BT0535 at 659.134 kb on + strand, within BT0535 at 659.246 kb on + strand at 659.247 kb on - strand at 659.289 kb on + strand at 659.289 kb on + strand at 659.352 kb on + strand at 659.394 kb on - strand at 659.394 kb on - strand at 659.396 kb on + strand at 659.397 kb on - strand at 659.404 kb on - strand at 659.407 kb on - strand at 659.453 kb on - strand at 659.459 kb on + strand at 659.460 kb on - strand at 659.544 kb on - strand, within BT0536 at 659.702 kb on - strand, within BT0536 at 659.702 kb on - strand, within BT0536 at 659.997 kb on + strand at 659.998 kb on - strand at 660.033 kb on + strand at 660.033 kb on + strand at 660.120 kb on - strand at 660.323 kb on - strand, within BT0537 at 660.325 kb on + strand, within BT0537 at 660.427 kb on + strand, within BT0537 at 660.428 kb on - strand, within BT0537 at 660.429 kb on + strand, within BT0537 at 660.479 kb on + strand, within BT0537 at 660.501 kb on + strand, within BT0537 at 660.524 kb on + strand, within BT0537 at 660.533 kb on + strand, within BT0537 at 660.671 kb on + strand, within BT0537 at 660.732 kb on - strand, within BT0537 at 660.796 kb on - strand, within BT0537 at 660.818 kb on + strand, within BT0537 at 660.871 kb on - strand, within BT0537 at 660.874 kb on - strand, within BT0537 at 660.902 kb on + strand, within BT0537 at 660.925 kb on + strand, within BT0537 at 661.000 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Lithocholic 0.2 mg/ml remove 658,490 + BT0535 0.29 +0.2 658,635 - BT0535 0.41 -0.8 658,754 + BT0535 0.52 +0.0 658,754 + BT0535 0.52 +0.2 658,822 - BT0535 0.58 -0.8 658,996 + BT0535 0.73 -0.6 658,996 + BT0535 0.73 -0.5 659,009 - BT0535 0.74 +0.0 659,025 + BT0535 0.75 -0.7 659,066 + BT0535 0.79 -1.1 659,134 + BT0535 0.85 +0.1 659,246 + -2.5 659,247 - +0.2 659,289 + +0.1 659,289 + -0.1 659,352 + -0.4 659,394 - -2.0 659,394 - -1.0 659,396 + -0.1 659,397 - +2.0 659,404 - -1.8 659,407 - +1.0 659,453 - +0.5 659,459 + -0.1 659,460 - +1.5 659,544 - BT0536 0.11 -0.8 659,702 - BT0536 0.39 -1.5 659,702 - BT0536 0.39 -1.8 659,997 + -0.2 659,998 - +0.0 660,033 + -2.4 660,033 + -0.0 660,120 - -0.6 660,323 - BT0537 0.27 -0.6 660,325 + BT0537 0.27 +0.5 660,427 + BT0537 0.37 -1.4 660,428 - BT0537 0.37 -0.6 660,429 + BT0537 0.37 +1.5 660,479 + BT0537 0.41 -0.2 660,501 + BT0537 0.43 -0.9 660,524 + BT0537 0.46 -1.7 660,533 + BT0537 0.46 -1.4 660,671 + BT0537 0.59 -1.4 660,732 - BT0537 0.65 -0.6 660,796 - BT0537 0.71 -0.4 660,818 + BT0537 0.73 -2.3 660,871 - BT0537 0.78 -1.7 660,874 - BT0537 0.78 -0.7 660,902 + BT0537 0.81 +0.5 660,925 + BT0537 0.83 -1.2 661,000 - -0.3
Or see this region's nucleotide sequence